Wall clock time and date at job start Tue Mar 31 2020 12:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99753 * 2 1 4 4 C 1.38754 * 120.05829 * 0.20787 * 3 2 1 5 5 C 1.38123 * 119.94005 * 180.27743 * 4 3 2 6 6 C 1.38286 * 120.05834 * 359.76867 * 5 4 3 7 7 C 1.50695 * 119.94322 * 179.97438 * 6 5 4 8 8 C 1.38245 * 120.11262 * 359.97438 * 6 5 4 9 9 C 1.38167 * 120.05381 * 0.02562 * 8 6 5 10 10 C 1.50704 * 120.02705 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46988 * 265.00489 * 10 9 8 12 12 O 1.21288 * 119.99912 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00075 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64727 * 0.02562 * 13 11 10 15 15 C 1.54324 * 107.27511 * 178.92140 * 14 13 11 16 16 C 1.55164 * 102.93878 * 337.80517 * 15 14 13 17 17 H 1.08997 * 111.00137 * 277.38878 * 16 15 14 18 18 N 1.46506 * 111.00115 * 153.57413 * 16 15 14 19 19 C 1.36929 * 119.99807 * 86.45508 * 18 16 15 20 20 H 1.08004 * 120.00341 * 0.27647 * 19 18 16 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 90.00489 * 23 21 19 25 25 H 1.48496 * 109.47029 * 210.00506 * 23 21 19 26 26 H 1.48499 * 109.47352 * 330.00336 * 23 21 19 27 27 C 1.47425 * 125.65466 * 179.97438 * 13 11 10 28 28 H 1.08998 * 109.47217 * 300.00352 * 1 2 3 29 29 H 1.09000 * 109.47010 * 59.99810 * 1 2 3 30 30 H 1.09001 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.02880 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.96957 * 179.74606 * 5 4 3 33 33 H 1.08998 * 109.47271 * 270.01558 * 7 6 5 34 34 H 1.08998 * 109.47867 * 30.02001 * 7 6 5 35 35 H 1.09008 * 109.47095 * 150.02336 * 7 6 5 36 36 H 1.07998 * 119.97475 * 180.02562 * 8 6 5 37 37 H 1.08994 * 109.47003 * 145.00592 * 10 9 8 38 38 H 1.09002 * 109.46899 * 24.99943 * 10 9 8 39 39 H 1.09003 * 109.88417 * 59.50502 * 14 13 11 40 40 H 1.09000 * 110.01415 * 298.40805 * 14 13 11 41 41 H 1.08994 * 110.72159 * 219.44700 * 15 14 13 42 42 H 1.08994 * 110.87362 * 96.23841 * 15 14 13 43 43 H 0.96999 * 120.00076 * 266.45571 * 18 16 15 44 44 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36918 * 85.30620 * 27 13 11 46 46 H 1.09005 * 110.36380 * 322.99157 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9209 3.6047 -0.0014 6 6 3.3019 3.6758 -0.0068 7 6 3.9860 5.0184 -0.0137 8 6 4.0560 2.5171 -0.0057 9 6 3.4311 1.2848 0.0001 10 6 4.2537 0.0221 0.0006 11 6 4.4190 -0.4703 -1.4141 12 8 3.9177 0.1434 -2.3323 13 7 5.1230 -1.5932 -1.6589 14 6 5.7791 -2.4314 -0.6447 15 6 6.4359 -3.6159 -1.3842 16 6 5.6345 -3.6845 -2.7111 17 1 4.7024 -4.2332 -2.5766 18 7 6.4404 -4.2780 -3.7811 19 6 6.4746 -5.6378 -3.9384 20 1 5.9041 -6.2726 -3.2765 21 6 7.2377 -6.2002 -4.9525 22 7 7.9286 -5.4264 -5.7625 23 14 7.2839 -8.0553 -5.1675 24 1 6.1987 -8.4737 -6.0909 25 1 8.5972 -8.4554 -5.7334 26 1 7.0924 -8.7113 -3.8491 27 6 5.3618 -2.1852 -2.9878 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2129 2.3204 0.0082 32 1 1.3341 4.5113 -0.0022 33 1 4.1470 5.3390 -1.0430 34 1 3.3602 5.7479 0.5004 35 1 4.9461 4.9397 0.4966 36 1 5.1344 2.5751 -0.0095 37 1 3.7489 -0.7402 0.5939 38 1 5.2341 0.2273 0.4307 39 1 5.0394 -2.8018 0.0652 40 1 6.5402 -1.8544 -0.1194 41 1 6.3193 -4.5382 -0.8152 42 1 7.4893 -3.4157 -1.5798 43 1 6.9496 -3.7077 -4.3780 44 1 8.4622 -5.8193 -6.4709 45 1 6.2292 -1.7226 -3.4588 46 1 4.4802 -2.0699 -3.6184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019107661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:11 Heat of formation + Delta-G solvation = -36.321955 kcal Electronic energy + Delta-G solvation = -26329.069937 eV Core-core repulsion = 22605.149267 eV Total energy + Delta-G solvation = -3723.920669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60467 -39.47365 -37.82437 -37.15185 -34.09989 -33.36518 -31.79403 -31.43752 -29.51851 -28.66439 -28.04822 -27.03450 -25.97625 -23.73183 -22.81236 -22.12798 -21.01551 -20.04035 -18.94552 -18.06211 -17.31293 -16.90349 -16.68031 -15.93099 -15.80885 -15.29594 -14.83003 -14.55359 -14.46510 -14.12572 -13.96165 -13.76739 -13.51499 -13.29777 -13.15305 -12.72963 -12.56906 -12.42734 -12.22573 -12.13799 -12.01661 -11.79916 -11.57229 -11.42306 -11.14335 -11.01375 -10.94987 -10.83200 -10.68067 -10.28187 -10.04514 -9.76836 -9.63500 -8.96312 -8.94375 -8.32310 -8.10165 -7.03886 -5.81700 -3.12124 1.17520 1.30705 2.90291 3.15376 3.20649 3.41375 3.46612 3.48195 3.66339 4.50510 4.55324 4.61245 4.71535 4.81493 4.85270 4.97479 5.08066 5.09581 5.11516 5.17068 5.29062 5.32976 5.37175 5.44041 5.45351 5.47343 5.56568 5.60082 5.65348 5.74657 5.79083 5.93305 6.02806 6.16361 6.17482 6.25049 6.29503 6.41884 6.46321 6.60438 6.65403 6.67092 6.94361 7.26174 7.65927 7.82380 8.35660 8.44252 9.47338 10.01876 10.36927 11.40620 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002482 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.058704 B =11279.997095 C =11797.552015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.139 3.861 4 C -0.205 4.205 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.108 4.108 8 C -0.069 4.069 9 C -0.091 4.091 10 C -0.088 4.088 11 C 0.531 3.469 12 O -0.539 6.539 13 N -0.615 5.615 14 C 0.101 3.899 15 C -0.155 4.155 16 C 0.172 3.828 17 H 0.062 0.938 18 N -0.715 5.715 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.101 3.899 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.067 0.933 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 17.375 17.266 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.094 3.906 4 C -0.224 4.224 5 C -0.100 4.100 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.087 4.087 9 C -0.092 4.092 10 C -0.128 4.128 11 C 0.319 3.681 12 O -0.416 6.416 13 N -0.350 5.350 14 C -0.022 4.022 15 C -0.196 4.196 16 C 0.060 3.940 17 H 0.080 0.920 18 N -0.356 5.356 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.022 4.022 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.678 17.375 16.763 26.820 hybrid contribution 0.009 -0.799 -0.343 0.869 sum -11.669 16.577 16.421 26.088 Atomic orbital electron populations 1.23040 0.78510 1.03973 1.01108 1.86082 1.21235 1.26790 1.88417 1.18752 0.91633 0.84281 0.95927 1.21141 0.99819 0.92282 1.09175 1.20758 0.93911 0.96865 0.98514 1.19741 0.93624 0.95381 1.03828 1.20701 1.00152 0.93366 1.02218 1.20715 0.99609 0.90519 0.97877 1.18642 0.90280 0.94598 1.05644 1.20440 1.00983 0.96075 0.95303 1.20070 0.77683 0.79397 0.90911 1.90700 1.48181 1.56239 1.46455 1.48451 1.52332 1.24823 1.09377 1.22091 0.96126 0.92656 0.91357 1.23398 1.01055 0.95895 0.99227 1.21294 0.94114 0.90140 0.88488 0.91978 1.42261 1.54633 1.04667 1.34029 1.19208 1.23624 0.82772 1.11780 0.90993 1.24774 0.99907 0.97929 0.98127 1.69662 1.33894 1.33785 1.20488 0.86168 0.76972 0.85164 0.77725 1.21649 1.21738 1.20689 1.22483 1.01368 0.94406 0.83983 0.92847 0.92661 0.88243 0.85563 0.86017 0.91404 0.91863 0.91699 0.85523 0.87828 0.88304 0.91896 0.92073 0.90774 0.90549 0.77950 0.93366 0.91481 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -3.97 9.64 -19.43 -0.19 -4.16 16 3 C 0.14 1.80 6.66 -39.22 -0.26 1.54 16 4 C -0.21 -2.25 9.04 -39.43 -0.36 -2.60 16 5 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 6 C -0.13 -1.31 5.88 -104.60 -0.62 -1.93 16 7 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 8 C -0.07 -0.80 9.33 -39.60 -0.37 -1.17 16 9 C -0.09 -1.18 4.39 -104.47 -0.46 -1.63 16 10 C -0.09 -1.09 4.74 -29.03 -0.14 -1.23 16 11 C 0.53 8.70 7.84 -10.99 -0.09 8.61 16 12 O -0.54 -10.91 16.29 5.55 0.09 -10.81 16 13 N -0.62 -9.87 3.33 -170.53 -0.57 -10.44 16 14 C 0.10 1.35 6.49 -3.06 -0.02 1.33 16 15 C -0.15 -2.53 6.65 -24.89 -0.17 -2.69 16 16 C 0.17 3.37 3.68 -65.79 -0.24 3.13 16 17 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 18 N -0.72 -17.59 5.28 -51.36 -0.27 -17.87 16 19 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.10 1.86 6.53 -2.54 -0.02 1.84 16 28 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 29 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.06 0.44 8.08 -51.92 -0.42 0.02 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.10 1.17 7.70 -51.93 -0.40 0.77 16 38 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.39 10.14 7.71 -40.82 -0.31 9.83 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 46 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -33.65 381.21 -8.78 -42.42 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.28 Total: 7.54 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.01 Total: -2.39 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.11 Total: -55.37 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.10 Total: -14.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.65 -8.78 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019107661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.102 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds