Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99753 * 2 1 4 4 C 1.38754 * 120.05829 * 0.20787 * 3 2 1 5 5 C 1.38123 * 119.94005 * 180.27743 * 4 3 2 6 6 C 1.38286 * 120.05834 * 359.76867 * 5 4 3 7 7 C 1.50695 * 119.94322 * 179.97438 * 6 5 4 8 8 C 1.38245 * 120.11262 * 359.97438 * 6 5 4 9 9 C 1.38167 * 120.05381 * 0.02562 * 8 6 5 10 10 C 1.50704 * 120.02705 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46988 * 265.00489 * 10 9 8 12 12 O 1.21288 * 119.99912 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00075 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64727 * 0.02562 * 13 11 10 15 15 C 1.54324 * 107.27511 * 178.92140 * 14 13 11 16 16 C 1.55164 * 102.93878 * 337.80517 * 15 14 13 17 17 H 1.08997 * 111.00137 * 277.38878 * 16 15 14 18 18 N 1.46506 * 111.00115 * 153.57413 * 16 15 14 19 19 C 1.36929 * 119.99807 * 86.45508 * 18 16 15 20 20 H 1.08004 * 120.00341 * 0.27647 * 19 18 16 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 90.00489 * 23 21 19 25 25 H 1.48496 * 109.47029 * 210.00506 * 23 21 19 26 26 H 1.48499 * 109.47352 * 330.00336 * 23 21 19 27 27 C 1.47425 * 125.65466 * 179.97438 * 13 11 10 28 28 H 1.08998 * 109.47217 * 300.00352 * 1 2 3 29 29 H 1.09000 * 109.47010 * 59.99810 * 1 2 3 30 30 H 1.09001 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.02880 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.96957 * 179.74606 * 5 4 3 33 33 H 1.08998 * 109.47271 * 270.01558 * 7 6 5 34 34 H 1.08998 * 109.47867 * 30.02001 * 7 6 5 35 35 H 1.09008 * 109.47095 * 150.02336 * 7 6 5 36 36 H 1.07998 * 119.97475 * 180.02562 * 8 6 5 37 37 H 1.08994 * 109.47003 * 145.00592 * 10 9 8 38 38 H 1.09002 * 109.46899 * 24.99943 * 10 9 8 39 39 H 1.09003 * 109.88417 * 59.50502 * 14 13 11 40 40 H 1.09000 * 110.01415 * 298.40805 * 14 13 11 41 41 H 1.08994 * 110.72159 * 219.44700 * 15 14 13 42 42 H 1.08994 * 110.87362 * 96.23841 * 15 14 13 43 43 H 0.96999 * 120.00076 * 266.45571 * 18 16 15 44 44 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.36918 * 85.30620 * 27 13 11 46 46 H 1.09005 * 110.36380 * 322.99157 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9209 3.6047 -0.0014 6 6 3.3019 3.6758 -0.0068 7 6 3.9860 5.0184 -0.0137 8 6 4.0560 2.5171 -0.0057 9 6 3.4311 1.2848 0.0001 10 6 4.2537 0.0221 0.0006 11 6 4.4190 -0.4703 -1.4141 12 8 3.9177 0.1434 -2.3323 13 7 5.1230 -1.5932 -1.6589 14 6 5.7791 -2.4314 -0.6447 15 6 6.4359 -3.6159 -1.3842 16 6 5.6345 -3.6845 -2.7111 17 1 4.7024 -4.2332 -2.5766 18 7 6.4404 -4.2780 -3.7811 19 6 6.4746 -5.6378 -3.9384 20 1 5.9041 -6.2726 -3.2765 21 6 7.2377 -6.2002 -4.9525 22 7 7.9286 -5.4264 -5.7625 23 14 7.2839 -8.0553 -5.1675 24 1 6.1987 -8.4737 -6.0909 25 1 8.5972 -8.4554 -5.7334 26 1 7.0924 -8.7113 -3.8491 27 6 5.3618 -2.1852 -2.9878 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2129 2.3204 0.0082 32 1 1.3341 4.5113 -0.0022 33 1 4.1470 5.3390 -1.0430 34 1 3.3602 5.7479 0.5004 35 1 4.9461 4.9397 0.4966 36 1 5.1344 2.5751 -0.0095 37 1 3.7489 -0.7402 0.5939 38 1 5.2341 0.2273 0.4307 39 1 5.0394 -2.8018 0.0652 40 1 6.5402 -1.8544 -0.1194 41 1 6.3193 -4.5382 -0.8152 42 1 7.4893 -3.4157 -1.5798 43 1 6.9496 -3.7077 -4.3780 44 1 8.4622 -5.8193 -6.4709 45 1 6.2292 -1.7226 -3.4588 46 1 4.4802 -2.0699 -3.6184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019107661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = -57.334620 kcal Electronic energy + Delta-G solvation = -26329.981114 eV Core-core repulsion = 22605.149267 eV Total energy + Delta-G solvation = -3724.831847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.53979 -40.67335 -38.76534 -38.43532 -35.91897 -34.29609 -33.27473 -32.48874 -31.04474 -29.92150 -28.73559 -28.31525 -26.70082 -25.59786 -24.17812 -22.98161 -21.92089 -21.57092 -20.13752 -19.28285 -18.88545 -18.16646 -17.61130 -17.26795 -16.66329 -16.51565 -16.19719 -15.80458 -15.51185 -15.32975 -15.19070 -14.75084 -14.65175 -14.49666 -14.38535 -14.05205 -13.70434 -13.53420 -13.16699 -13.10167 -13.02782 -12.96548 -12.86990 -12.66067 -12.65233 -12.35243 -12.22408 -12.10054 -11.78672 -11.74054 -11.68064 -11.60236 -10.96987 -10.94726 -9.79976 -9.65087 -9.05511 -8.91569 -7.95251 -5.25662 0.34472 0.49126 1.48985 1.50751 1.59010 1.65308 1.97892 2.40962 2.57053 2.80184 3.36105 3.61810 3.70546 3.73253 3.84146 3.98511 4.00591 4.12149 4.21032 4.26000 4.30638 4.36780 4.37769 4.43020 4.45779 4.51987 4.58283 4.66146 4.70887 4.77041 4.79155 4.86352 4.89215 5.00842 5.11742 5.20443 5.24808 5.26253 5.37896 5.43215 5.45297 5.54089 5.69282 5.90888 6.25351 6.46378 6.57671 7.16970 7.31926 8.03199 8.27780 9.28252 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002482 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.058704 B =11279.997095 C =11797.552015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.087 4.087 6 C -0.134 4.134 7 C -0.106 4.106 8 C -0.082 4.082 9 C -0.117 4.117 10 C -0.076 4.076 11 C 0.527 3.473 12 O -0.585 6.585 13 N -0.615 5.615 14 C 0.106 3.894 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.058 0.942 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.076 4.076 22 N -0.971 5.971 23 Si 0.975 3.025 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.265 1.265 27 C 0.110 3.890 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.056 0.944 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 17.867 19.924 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.163 4.163 8 C -0.100 4.100 9 C -0.118 4.118 10 C -0.116 4.116 11 C 0.318 3.682 12 O -0.465 6.465 13 N -0.349 5.349 14 C -0.016 4.016 15 C -0.184 4.184 16 C 0.055 3.945 17 H 0.076 0.924 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.217 1.217 25 H -0.224 1.224 26 H -0.190 1.190 27 C -0.015 4.015 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.373 17.866 19.502 29.199 hybrid contribution 0.115 -0.863 -1.146 1.439 sum -12.258 17.002 18.356 27.862 Atomic orbital electron populations 1.23271 0.76835 1.05192 1.02013 1.86028 1.23150 1.27162 1.88628 1.19048 0.92111 0.84928 0.96757 1.21447 1.00891 0.92123 1.08712 1.21144 0.94227 0.97599 0.97518 1.20136 0.94063 0.96303 1.02959 1.20743 1.00740 0.92220 1.02547 1.20992 1.00473 0.90628 0.97921 1.18892 0.90742 0.95252 1.06931 1.20442 1.02715 0.96197 0.92210 1.20878 0.76433 0.78624 0.92250 1.90673 1.50005 1.57594 1.48275 1.48531 1.52507 1.25139 1.08722 1.22238 0.97367 0.91391 0.90563 1.23193 0.99909 0.98008 0.97282 1.21436 0.93834 0.90265 0.88924 0.92362 1.42417 1.55225 1.04009 1.35305 1.19604 1.22354 0.84009 1.11100 0.90098 1.25598 1.00455 1.02264 0.98453 1.69825 1.35369 1.35491 1.21405 0.85121 0.76313 0.80131 0.78068 1.21720 1.22354 1.18954 1.22157 0.99920 0.93937 0.85450 0.90877 0.92755 0.86966 0.83717 0.83497 0.91447 0.90199 0.90780 0.84335 0.86584 0.85335 0.89017 0.88859 0.89633 0.91747 0.79431 0.94002 0.92609 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -8.31 9.64 -92.43 -0.89 -9.20 16 3 C 0.12 2.93 6.66 22.51 0.15 3.08 16 4 C -0.21 -4.40 9.04 22.37 0.20 -4.20 16 5 C -0.09 -1.61 9.69 22.25 0.22 -1.39 16 6 C -0.13 -2.60 5.88 -19.85 -0.12 -2.71 16 7 C -0.11 -1.40 10.01 71.23 0.71 -0.68 16 8 C -0.08 -1.80 9.33 22.25 0.21 -1.59 16 9 C -0.12 -2.92 4.39 -19.77 -0.09 -3.01 16 10 C -0.08 -1.74 4.74 29.10 0.14 -1.60 16 11 C 0.53 16.87 7.84 87.66 0.69 17.56 16 12 O -0.59 -24.11 16.29 -3.05 -0.05 -24.16 16 13 N -0.62 -19.05 3.33 -811.82 -2.70 -21.75 16 14 C 0.11 2.52 6.49 86.73 0.56 3.08 16 15 C -0.14 -4.43 6.65 31.79 0.21 -4.22 16 16 C 0.17 6.48 3.68 46.38 0.17 6.65 16 17 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 18 N -0.73 -36.53 5.28 -316.40 -1.67 -38.20 16 19 C -0.24 -12.99 9.98 84.04 0.84 -12.15 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 23 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.11 4.13 6.53 86.85 0.57 4.69 16 28 H 0.07 0.84 7.65 -2.39 -0.02 0.82 16 29 H 0.05 0.85 7.67 -2.39 -0.02 0.83 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 35 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 36 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.12 2.34 7.70 -2.39 -0.02 2.32 16 38 H 0.13 2.09 8.05 -2.39 -0.02 2.07 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.37 20.33 7.71 -92.71 -0.71 19.61 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.06 2.21 8.00 -2.39 -0.02 2.19 16 46 H 0.05 2.21 8.04 -2.38 -0.02 2.20 16 Total: -1.00 -74.80 381.21 3.30 -71.50 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.26 Total: 32.13 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.04 Total: 1.14 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -4.09 Total: -119.01 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.94 Total: -33.36 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.80 3.30 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019107661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.169 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds