Wall clock time and date at job start Tue Mar 31 2020 12:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48502 * 109.47306 * 89.99818 * 3 2 1 5 5 H 1.48502 * 109.47237 * 209.99745 * 3 2 1 6 6 H 1.48501 * 109.47220 * 329.99873 * 3 2 1 7 7 C 1.38809 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 18.80207 * 7 2 1 9 9 N 1.36934 * 120.00081 * 198.80395 * 7 2 1 10 10 C 1.46864 * 120.47152 * 30.50680 * 9 7 2 11 11 C 1.53772 * 108.85608 * 127.29511 * 10 9 7 12 12 C 1.52892 * 108.86970 * 54.35132 * 11 10 9 13 13 H 1.08997 * 109.52840 * 57.66065 * 12 11 10 14 14 C 1.53278 * 109.15911 * 297.74644 * 12 11 10 15 15 H 1.09001 * 109.47638 * 303.54190 * 14 12 11 16 16 C 1.52822 * 109.16862 * 183.72213 * 14 12 11 17 17 C 1.53147 * 109.26749 * 61.80700 * 16 14 12 18 18 C 1.53136 * 109.61722 * 299.15564 * 17 16 14 19 19 N 1.46716 * 110.30073 * 178.50662 * 12 11 10 20 20 C 1.34778 * 120.83975 * 353.92713 * 19 12 11 21 21 O 1.21280 * 120.00143 * 354.90022 * 20 19 12 22 22 C 1.50702 * 119.99650 * 174.89509 * 20 19 12 23 23 C 1.50703 * 109.46929 * 180.02562 * 22 20 19 24 24 C 1.41383 * 126.57784 * 90.00425 * 23 22 20 25 25 C 1.34518 * 106.83902 * 179.97438 * 24 23 22 26 26 O 1.34302 * 108.41817 * 359.97438 * 25 24 23 27 27 C 1.34307 * 109.48064 * 359.76644 * 26 25 24 28 28 C 1.47069 * 120.47305 * 210.78658 * 9 7 2 29 29 H 0.97006 * 120.00043 * 174.93930 * 1 2 3 30 30 H 1.08993 * 109.53440 * 247.24378 * 10 9 7 31 31 H 1.09003 * 109.53172 * 7.46629 * 10 9 7 32 32 H 1.09000 * 109.71250 * 294.46798 * 11 10 9 33 33 H 1.09006 * 109.57525 * 174.15050 * 11 10 9 34 34 H 1.08997 * 109.50716 * 181.74517 * 16 14 12 35 35 H 1.09005 * 109.50715 * 301.87445 * 16 14 12 36 36 H 1.08998 * 109.44748 * 179.11150 * 17 16 14 37 37 H 1.08997 * 109.41621 * 59.18418 * 17 16 14 38 38 H 1.08991 * 109.54146 * 294.12733 * 18 17 16 39 39 H 1.08997 * 109.53913 * 173.86516 * 18 17 16 40 40 H 1.09004 * 109.47245 * 300.00638 * 22 20 19 41 41 H 1.09003 * 109.46950 * 60.00368 * 22 20 19 42 42 H 1.08000 * 126.58178 * 359.92577 * 24 23 22 43 43 H 1.07998 * 125.78884 * 179.97438 * 25 24 23 44 44 H 1.07998 * 125.79163 * 180.23241 * 27 26 25 45 45 H 1.09005 * 109.68745 * 353.02652 * 28 9 7 46 46 H 1.08998 * 109.69233 * 113.60137 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.5135 -2.1123 -0.3024 9 7 3.3248 -1.2339 0.3817 10 6 3.8351 -0.2791 1.3741 11 6 4.5448 -1.0579 2.4940 12 6 5.6097 -1.9605 1.8704 13 1 6.3102 -1.3544 1.2959 14 6 4.9298 -2.9745 0.9436 15 1 4.1834 -3.5365 1.5050 16 6 5.9827 -3.9354 0.3925 17 6 6.6242 -4.7017 1.5529 18 6 7.3061 -3.7157 2.5057 19 7 6.3319 -2.6934 2.9163 20 6 6.1084 -2.4359 4.2202 21 8 5.3719 -1.5274 4.5414 22 6 6.7736 -3.2770 5.2791 23 6 6.3607 -2.7865 6.6430 24 6 5.2463 -3.2251 7.3944 25 6 5.2534 -2.5281 8.5449 26 8 6.3073 -1.6958 8.5304 27 6 6.9856 -1.8521 7.3817 28 6 4.2471 -2.2206 -0.2002 29 1 -0.4850 -0.8368 -0.0741 30 1 4.5398 0.4015 0.8962 31 1 3.0050 0.2895 1.7933 32 1 3.8203 -1.6677 3.0339 33 1 5.0177 -0.3578 3.1827 34 1 5.5099 -4.6399 -0.2917 35 1 6.7490 -3.3702 -0.1381 36 1 7.3647 -5.3994 1.1618 37 1 5.8545 -5.2539 2.0920 38 1 8.1437 -3.2379 1.9977 39 1 7.6674 -4.2489 3.3850 40 1 6.4705 -4.3173 5.1603 41 1 7.8561 -3.2001 5.1773 42 1 4.5269 -3.9752 7.1007 43 1 4.5336 -2.6220 9.3446 44 1 7.8792 -1.3161 7.0981 45 1 3.6902 -2.9220 -0.8216 46 1 4.9978 -1.7105 -0.8037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021570212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:56 Heat of formation + Delta-G solvation = 15.889699 kcal Electronic energy + Delta-G solvation = -27966.166961 eV Core-core repulsion = 24244.510359 eV Total energy + Delta-G solvation = -3721.656602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.60592 -40.51690 -37.91262 -36.05543 -34.15128 -33.07168 -32.53827 -30.85573 -30.18474 -29.66883 -27.84647 -25.61879 -24.47373 -22.93978 -22.02127 -21.67402 -20.98251 -20.32335 -19.64151 -18.91832 -17.48483 -17.29556 -16.64447 -15.93940 -15.81216 -15.44123 -14.81906 -14.64424 -14.41951 -14.19818 -14.10927 -13.67398 -13.48122 -13.28840 -12.86216 -12.80739 -12.67062 -12.43502 -12.35855 -12.27697 -11.74958 -11.63015 -11.38193 -11.09207 -11.07838 -10.82215 -10.49574 -10.35525 -10.28948 -9.80817 -9.69513 -9.52240 -9.08383 -8.80424 -8.57174 -8.40082 -8.31771 -6.95378 -6.16291 -3.27576 1.71379 2.46407 2.76892 3.06780 3.19537 3.49357 3.58845 3.75447 4.58732 4.59605 4.65239 4.67380 4.77568 4.85756 4.89504 4.91947 5.17268 5.20625 5.23809 5.33547 5.37532 5.40007 5.50216 5.56397 5.62613 5.77514 5.77665 5.91220 5.92801 6.01765 6.07677 6.11193 6.19853 6.21218 6.28617 6.37778 6.41977 6.59195 6.69290 6.80371 6.87465 6.97039 7.03951 7.18750 7.59144 8.09963 8.40015 8.52767 9.13663 9.67815 10.28104 11.21116 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.004303 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.580481 B = 6505.665688 C = 7913.270265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.015 4.015 3 Si 1.067 2.933 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.300 1.300 7 C -0.343 4.343 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.119 3.881 11 C -0.121 4.121 12 C 0.159 3.841 13 H 0.065 0.935 14 C -0.115 4.115 15 H 0.071 0.929 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.108 3.892 19 N -0.612 5.612 20 C 0.511 3.489 21 O -0.515 6.515 22 C -0.071 4.071 23 C -0.160 4.160 24 C -0.197 4.197 25 C -0.045 4.045 26 O -0.178 6.178 27 C -0.030 4.030 28 C 0.157 3.843 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.145 0.855 43 H 0.201 0.799 44 H 0.198 0.802 45 H 0.060 0.940 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.573 -10.461 11.123 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.216 4.216 3 Si 0.899 3.101 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.228 1.228 7 C -0.472 4.472 8 H 0.080 0.920 9 N -0.330 5.330 10 C -0.007 4.007 11 C -0.160 4.160 12 C 0.057 3.943 13 H 0.083 0.917 14 C -0.136 4.136 15 H 0.089 0.911 16 C -0.152 4.152 17 C -0.172 4.172 18 C -0.015 4.015 19 N -0.346 5.346 20 C 0.299 3.701 21 O -0.391 6.391 22 C -0.112 4.112 23 C -0.162 4.162 24 C -0.217 4.217 25 C -0.112 4.112 26 O -0.073 6.073 27 C -0.098 4.098 28 C 0.030 3.970 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.163 0.837 43 H 0.217 0.783 44 H 0.215 0.785 45 H 0.078 0.922 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 19.025 -8.128 11.576 23.707 hybrid contribution 0.095 -2.066 -0.364 2.100 sum 19.121 -10.193 11.213 24.397 Atomic orbital electron populations 1.70903 1.06078 1.29882 1.49481 1.26231 0.96595 1.01273 0.97491 0.83738 0.74564 0.75706 0.76093 1.22053 1.21194 1.22848 1.20211 0.85795 0.94919 1.46278 0.91976 1.44400 1.07137 1.37151 1.44319 1.21665 0.97140 0.92368 0.89511 1.22617 0.96762 0.99093 0.97576 1.21238 0.93156 0.92400 0.87525 0.91742 1.22080 0.96835 0.96214 0.98458 0.91067 1.21515 0.98317 0.98269 0.97071 1.21906 1.00316 0.97711 0.97238 1.21718 0.91263 0.89652 0.98914 1.48283 1.41701 1.38933 1.05643 1.20516 0.82038 0.84827 0.82745 1.90775 1.36707 1.30345 1.81246 1.20086 1.01209 1.00237 0.89618 1.19797 0.98177 1.01411 0.96764 1.21671 1.00370 1.04509 0.95117 1.23938 0.92108 0.94010 1.01124 1.84048 1.33963 1.52061 1.37276 1.23728 0.99690 1.01012 0.85363 1.20901 0.92206 0.91678 0.92247 0.92814 0.96022 0.90743 0.91585 0.89549 0.91668 0.91958 0.91030 0.91648 0.91455 0.90153 0.88315 0.88559 0.83716 0.78264 0.78505 0.92165 0.96120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.61 13.70 55.49 0.76 -28.85 16 2 C -0.01 -0.44 5.23 -17.43 -0.09 -0.53 16 3 Si 1.07 27.73 24.70 -169.99 -4.20 23.53 16 4 H -0.29 -7.30 6.57 56.52 0.37 -6.93 16 5 H -0.29 -7.05 6.77 56.52 0.38 -6.67 16 6 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 7 C -0.34 -10.01 9.87 -15.06 -0.15 -10.16 16 8 H 0.06 1.92 8.06 -52.49 -0.42 1.50 16 9 N -0.61 -15.16 2.73 -171.98 -0.47 -15.63 16 10 C 0.12 2.80 4.22 -3.44 -0.01 2.79 16 11 C -0.12 -2.50 3.84 -26.39 -0.10 -2.60 16 12 C 0.16 2.67 2.64 -67.73 -0.18 2.49 16 13 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.11 -1.92 2.21 -90.53 -0.20 -2.12 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.11 -1.39 5.24 -26.75 -0.14 -1.53 16 17 C -0.13 -1.27 6.07 -26.58 -0.16 -1.43 16 18 C 0.11 1.00 6.35 -3.67 -0.02 0.97 16 19 N -0.61 -8.28 2.97 -165.32 -0.49 -8.77 16 20 C 0.51 7.40 7.58 -10.98 -0.08 7.32 16 21 O -0.52 -9.70 11.70 5.56 0.07 -9.63 16 22 C -0.07 -0.73 4.58 -29.03 -0.13 -0.86 16 23 C -0.16 -1.90 4.66 -104.74 -0.49 -2.38 16 24 C -0.20 -2.34 10.87 -39.70 -0.43 -2.77 16 25 C -0.04 -0.48 12.09 29.42 0.36 -0.12 16 26 O -0.18 -2.13 10.65 5.70 0.06 -2.06 16 27 C -0.03 -0.33 12.01 29.41 0.35 0.02 16 28 C 0.16 3.18 5.86 -3.70 -0.02 3.16 16 29 H 0.26 8.31 8.73 -40.82 -0.36 7.95 16 30 H 0.02 0.50 7.01 -51.93 -0.36 0.13 16 31 H 0.07 1.93 4.78 -51.93 -0.25 1.69 16 32 H 0.07 1.53 7.46 -51.93 -0.39 1.14 16 33 H 0.09 1.80 6.11 -51.93 -0.32 1.49 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 40 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 41 H 0.10 0.70 7.75 -51.93 -0.40 0.30 16 42 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.06 1.23 7.94 -51.93 -0.41 0.82 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -35.68 351.20 -7.61 -43.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.13 Total: 0.61 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.51 Total: -7.77 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.20 Total: -53.25 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.13 Total: -11.70 kcal Atomic # 14 Polarization: 27.73 SS G_CDS: -4.20 Total: 23.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.68 -7.61 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021570212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.180 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds