Wall clock time and date at job start Tue Mar 31 2020 12:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48502 * 109.47306 * 89.99818 * 3 2 1 5 5 H 1.48502 * 109.47237 * 209.99745 * 3 2 1 6 6 H 1.48501 * 109.47220 * 329.99873 * 3 2 1 7 7 C 1.38809 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 18.80207 * 7 2 1 9 9 N 1.36934 * 120.00081 * 198.80395 * 7 2 1 10 10 C 1.46864 * 120.47152 * 30.50680 * 9 7 2 11 11 C 1.53772 * 108.85608 * 127.29511 * 10 9 7 12 12 C 1.52892 * 108.86970 * 54.35132 * 11 10 9 13 13 H 1.08997 * 109.52840 * 57.66065 * 12 11 10 14 14 C 1.53278 * 109.15911 * 297.74644 * 12 11 10 15 15 H 1.09001 * 109.47638 * 303.54190 * 14 12 11 16 16 C 1.52822 * 109.16862 * 183.72213 * 14 12 11 17 17 C 1.53147 * 109.26749 * 61.80700 * 16 14 12 18 18 C 1.53136 * 109.61722 * 299.15564 * 17 16 14 19 19 N 1.46716 * 110.30073 * 178.50662 * 12 11 10 20 20 C 1.34778 * 120.83975 * 353.92713 * 19 12 11 21 21 O 1.21280 * 120.00143 * 354.90022 * 20 19 12 22 22 C 1.50702 * 119.99650 * 174.89509 * 20 19 12 23 23 C 1.50703 * 109.46929 * 180.02562 * 22 20 19 24 24 C 1.41383 * 126.57784 * 90.00425 * 23 22 20 25 25 C 1.34518 * 106.83902 * 179.97438 * 24 23 22 26 26 O 1.34302 * 108.41817 * 359.97438 * 25 24 23 27 27 C 1.34307 * 109.48064 * 359.76644 * 26 25 24 28 28 C 1.47069 * 120.47305 * 210.78658 * 9 7 2 29 29 H 0.97006 * 120.00043 * 174.93930 * 1 2 3 30 30 H 1.08993 * 109.53440 * 247.24378 * 10 9 7 31 31 H 1.09003 * 109.53172 * 7.46629 * 10 9 7 32 32 H 1.09000 * 109.71250 * 294.46798 * 11 10 9 33 33 H 1.09006 * 109.57525 * 174.15050 * 11 10 9 34 34 H 1.08997 * 109.50716 * 181.74517 * 16 14 12 35 35 H 1.09005 * 109.50715 * 301.87445 * 16 14 12 36 36 H 1.08998 * 109.44748 * 179.11150 * 17 16 14 37 37 H 1.08997 * 109.41621 * 59.18418 * 17 16 14 38 38 H 1.08991 * 109.54146 * 294.12733 * 18 17 16 39 39 H 1.08997 * 109.53913 * 173.86516 * 18 17 16 40 40 H 1.09004 * 109.47245 * 300.00638 * 22 20 19 41 41 H 1.09003 * 109.46950 * 60.00368 * 22 20 19 42 42 H 1.08000 * 126.58178 * 359.92577 * 24 23 22 43 43 H 1.07998 * 125.78884 * 179.97438 * 25 24 23 44 44 H 1.07998 * 125.79163 * 180.23241 * 27 26 25 45 45 H 1.09005 * 109.68745 * 353.02652 * 28 9 7 46 46 H 1.08998 * 109.69233 * 113.60137 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.5135 -2.1123 -0.3024 9 7 3.3248 -1.2339 0.3817 10 6 3.8351 -0.2791 1.3741 11 6 4.5448 -1.0579 2.4940 12 6 5.6097 -1.9605 1.8704 13 1 6.3102 -1.3544 1.2959 14 6 4.9298 -2.9745 0.9436 15 1 4.1834 -3.5365 1.5050 16 6 5.9827 -3.9354 0.3925 17 6 6.6242 -4.7017 1.5529 18 6 7.3061 -3.7157 2.5057 19 7 6.3319 -2.6934 2.9163 20 6 6.1084 -2.4359 4.2202 21 8 5.3719 -1.5274 4.5414 22 6 6.7736 -3.2770 5.2791 23 6 6.3607 -2.7865 6.6430 24 6 5.2463 -3.2251 7.3944 25 6 5.2534 -2.5281 8.5449 26 8 6.3073 -1.6958 8.5304 27 6 6.9856 -1.8521 7.3817 28 6 4.2471 -2.2206 -0.2002 29 1 -0.4850 -0.8368 -0.0741 30 1 4.5398 0.4015 0.8962 31 1 3.0050 0.2895 1.7933 32 1 3.8203 -1.6677 3.0339 33 1 5.0177 -0.3578 3.1827 34 1 5.5099 -4.6399 -0.2917 35 1 6.7490 -3.3702 -0.1381 36 1 7.3647 -5.3994 1.1618 37 1 5.8545 -5.2539 2.0920 38 1 8.1437 -3.2379 1.9977 39 1 7.6674 -4.2489 3.3850 40 1 6.4705 -4.3173 5.1603 41 1 7.8561 -3.2001 5.1773 42 1 4.5269 -3.9752 7.1007 43 1 4.5336 -2.6220 9.3446 44 1 7.8792 -1.3161 7.0981 45 1 3.6902 -2.9220 -0.8216 46 1 4.9978 -1.7105 -0.8037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021570212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:55 Heat of formation + Delta-G solvation = -8.294355 kcal Electronic energy + Delta-G solvation = -27967.215661 eV Core-core repulsion = 24244.510359 eV Total energy + Delta-G solvation = -3722.705301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43060 -41.70228 -39.27719 -37.50987 -35.16055 -34.54103 -34.07395 -32.47807 -31.33987 -30.96252 -28.81276 -27.05556 -25.92659 -24.30871 -23.75750 -22.50592 -22.02266 -21.60919 -21.07482 -19.92397 -19.44210 -18.32773 -17.73152 -17.22036 -16.75685 -16.61569 -16.26354 -15.95204 -15.57553 -15.50541 -15.48885 -15.38221 -14.79721 -14.55630 -14.01043 -13.90844 -13.72758 -13.69443 -13.62563 -13.55483 -13.30396 -13.11132 -12.65574 -12.40019 -12.24083 -12.12376 -11.91626 -11.74433 -11.73519 -11.53076 -11.39227 -11.19322 -10.69242 -10.63599 -10.03547 -9.49024 -9.40175 -9.11157 -8.49742 -5.60859 0.89594 1.38500 1.49376 1.57163 1.68591 1.72169 2.18023 2.34389 2.49289 3.04476 3.34693 3.59962 3.77189 3.78419 3.91745 3.96026 4.04908 4.12876 4.16343 4.22004 4.27273 4.38889 4.45679 4.54058 4.58413 4.60117 4.71248 4.76089 4.80937 4.82393 4.87809 4.89016 4.94672 5.10933 5.12881 5.13587 5.23464 5.31276 5.35029 5.36296 5.54290 5.59406 5.68978 5.72994 6.21381 6.22862 6.56311 6.87156 7.32523 7.53487 8.03663 8.81112 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.004303 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.580481 B = 6505.665688 C = 7913.270265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.069 4.069 3 Si 1.107 2.893 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.302 1.302 7 C -0.332 4.332 8 H 0.028 0.972 9 N -0.623 5.623 10 C 0.115 3.885 11 C -0.103 4.103 12 C 0.164 3.836 13 H 0.079 0.921 14 C -0.103 4.103 15 H 0.037 0.963 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.101 3.899 19 N -0.609 5.609 20 C 0.503 3.497 21 O -0.570 6.570 22 C -0.059 4.059 23 C -0.180 4.180 24 C -0.226 4.226 25 C -0.048 4.048 26 O -0.191 6.191 27 C -0.037 4.037 28 C 0.151 3.849 29 H 0.247 0.753 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.229 0.771 44 H 0.225 0.775 45 H 0.048 0.952 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.254 -11.510 11.427 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.933 3.067 4 H -0.208 1.208 5 H -0.185 1.185 6 H -0.230 1.230 7 C -0.462 4.462 8 H 0.046 0.954 9 N -0.348 5.348 10 C -0.010 4.010 11 C -0.142 4.142 12 C 0.061 3.939 13 H 0.097 0.903 14 C -0.124 4.124 15 H 0.056 0.944 16 C -0.147 4.147 17 C -0.166 4.166 18 C -0.020 4.020 19 N -0.342 5.342 20 C 0.293 3.707 21 O -0.449 6.449 22 C -0.098 4.098 23 C -0.182 4.182 24 C -0.245 4.245 25 C -0.115 4.115 26 O -0.087 6.087 27 C -0.104 4.104 28 C 0.026 3.974 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.245 0.755 44 H 0.242 0.758 45 H 0.067 0.933 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 23.780 -9.249 11.874 28.143 hybrid contribution -1.395 -1.860 -0.437 2.366 sum 22.385 -11.110 11.438 27.483 Atomic orbital electron populations 1.71015 1.07297 1.29039 1.52730 1.27448 0.96555 1.04797 0.97580 0.83231 0.74452 0.72098 0.76921 1.20829 1.18520 1.23020 1.20115 0.87950 0.93548 1.44539 0.95397 1.44514 1.06443 1.38560 1.45278 1.21703 0.96584 0.92582 0.90122 1.22335 0.96868 0.99064 0.95980 1.20956 0.92541 0.92185 0.88244 0.90315 1.21872 0.97295 0.96464 0.96739 0.94424 1.21506 0.97249 0.97572 0.98338 1.21907 1.00790 0.97901 0.96040 1.22129 0.90464 0.88726 1.00644 1.48332 1.41839 1.39372 1.04695 1.21327 0.81313 0.84507 0.83573 1.90746 1.39197 1.32941 1.82040 1.20108 1.03005 0.99868 0.86860 1.20121 0.98368 1.02006 0.97695 1.21956 1.01088 1.05390 0.96052 1.24541 0.92089 0.93167 1.01699 1.84049 1.34394 1.52388 1.37889 1.24335 1.00358 1.00817 0.84930 1.21118 0.91795 0.90791 0.93714 0.94370 0.94191 0.93905 0.95351 0.89679 0.91439 0.90123 0.87292 0.92786 0.89140 0.86655 0.86423 0.84582 0.83586 0.75484 0.75819 0.93339 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.24 13.70 21.65 0.30 -63.94 16 2 C -0.07 -4.33 5.23 84.86 0.44 -3.88 16 3 Si 1.11 56.89 24.70 68.60 1.69 58.58 16 4 H -0.28 -13.83 6.57 99.48 0.65 -13.18 16 5 H -0.26 -12.18 6.77 99.48 0.67 -11.50 16 6 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 7 C -0.33 -20.17 9.87 84.03 0.83 -19.34 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 N -0.62 -31.67 2.73 -698.02 -1.90 -33.57 16 10 C 0.12 5.46 4.22 86.57 0.37 5.83 16 11 C -0.10 -4.30 3.84 30.82 0.12 -4.18 16 12 C 0.16 5.19 2.64 45.01 0.12 5.31 16 13 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 14 C -0.10 -3.30 2.21 -10.74 -0.02 -3.32 16 15 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 16 C -0.11 -2.26 5.24 30.58 0.16 -2.10 16 17 C -0.13 -1.82 6.07 30.69 0.19 -1.64 16 18 C 0.10 1.31 6.35 86.32 0.55 1.86 16 19 N -0.61 -14.60 2.97 -795.34 -2.36 -16.97 16 20 C 0.50 13.51 7.58 87.66 0.66 14.17 16 21 O -0.57 -21.42 11.70 -3.03 -0.04 -21.45 16 22 C -0.06 -1.00 4.58 29.10 0.13 -0.87 16 23 C -0.18 -3.95 4.66 -19.94 -0.09 -4.04 16 24 C -0.23 -5.21 10.87 22.19 0.24 -4.97 16 25 C -0.05 -1.00 12.09 66.97 0.81 -0.19 16 26 O -0.19 -4.36 10.65 -2.51 -0.03 -4.39 16 27 C -0.04 -0.76 12.01 66.97 0.80 0.05 16 28 C 0.15 6.05 5.86 86.29 0.51 6.56 16 29 H 0.25 16.66 8.73 -92.70 -0.81 15.85 16 30 H 0.04 1.76 7.01 -2.39 -0.02 1.74 16 31 H 0.04 2.28 4.78 -2.39 -0.01 2.27 16 32 H 0.03 1.36 7.46 -2.39 -0.02 1.34 16 33 H 0.09 3.59 6.11 -2.38 -0.01 3.57 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.12 0.76 5.96 -2.39 -0.01 0.75 16 40 H 0.12 1.57 7.91 -2.38 -0.02 1.55 16 41 H 0.14 1.22 7.75 -2.39 -0.02 1.20 16 42 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.23 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.23 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.05 2.01 7.94 -2.38 -0.02 1.99 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -84.55 351.20 4.32 -80.23 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.84 Total: 12.26 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 5.81 Total: -10.75 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.97 Total: -114.48 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 56.89 SS G_CDS: 1.69 Total: 58.58 kcal Total: -84.55 4.32 -80.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021570212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.935 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds