Wall clock time and date at job start Tue Mar 31 2020 12:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48494 * 109.47081 * 272.79381 * 3 2 1 5 5 H 1.48504 * 109.46919 * 32.79655 * 3 2 1 6 6 H 1.48503 * 109.46927 * 152.78943 * 3 2 1 7 7 C 1.38810 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99751 * 339.36205 * 7 2 1 9 9 N 1.36937 * 120.00450 * 159.36390 * 7 2 1 10 10 C 1.46963 * 120.77248 * 152.77072 * 9 7 2 11 11 C 1.53098 * 108.62690 * 125.67592 * 10 9 7 12 12 C 1.53171 * 109.57252 * 55.33986 * 11 10 9 13 13 H 1.08999 * 110.66375 * 60.97743 * 12 11 10 14 14 C 1.53151 * 109.58245 * 299.41496 * 12 11 10 15 15 H 1.08998 * 109.24995 * 178.83351 * 14 12 11 16 16 C 1.52857 * 109.35953 * 298.36445 * 14 12 11 17 17 C 1.53119 * 109.34709 * 297.98005 * 16 14 12 18 18 C 1.53141 * 109.48450 * 60.64016 * 17 16 14 19 19 N 1.46946 * 109.02590 * 305.93149 * 18 17 16 20 20 C 1.34776 * 120.84778 * 234.01223 * 19 18 17 21 21 O 1.21285 * 119.99796 * 180.02562 * 20 19 18 22 22 C 1.50698 * 120.00284 * 0.02562 * 20 19 18 23 23 C 1.50699 * 109.47176 * 180.02562 * 22 20 19 24 24 C 1.41384 * 126.58020 * 90.00016 * 23 22 20 25 25 C 1.34513 * 106.83808 * 179.97438 * 24 23 22 26 26 O 1.34297 * 108.42409 * 359.97438 * 25 24 23 27 27 C 1.34312 * 109.47772 * 359.77388 * 26 25 24 28 28 C 1.46890 * 120.77028 * 332.74921 * 9 7 2 29 29 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.61562 * 5.93001 * 10 9 7 31 31 H 1.09002 * 109.75582 * 245.50308 * 10 9 7 32 32 H 1.09000 * 109.45253 * 295.31454 * 11 10 9 33 33 H 1.09000 * 109.43813 * 175.35997 * 11 10 9 34 34 H 1.08998 * 109.49262 * 57.94130 * 16 14 12 35 35 H 1.08999 * 109.49200 * 178.02008 * 16 14 12 36 36 H 1.08998 * 109.47153 * 300.63620 * 17 16 14 37 37 H 1.09001 * 109.46571 * 180.64130 * 17 16 14 38 38 H 1.09001 * 109.54839 * 186.06530 * 18 17 16 39 39 H 1.09008 * 109.54277 * 65.79326 * 18 17 16 40 40 H 1.09004 * 109.46754 * 300.00399 * 22 20 19 41 41 H 1.09003 * 109.46729 * 60.00366 * 22 20 19 42 42 H 1.08001 * 126.57527 * 359.92842 * 24 23 22 43 43 H 1.08000 * 125.78627 * 179.97438 * 25 24 23 44 44 H 1.07992 * 125.79331 * 180.23671 * 27 26 25 45 45 H 1.09000 * 109.52128 * 113.44199 * 28 9 7 46 46 H 1.09004 * 109.51853 * 353.26810 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4385 2.0806 -1.3984 5 1 1.4783 2.6349 0.7584 6 1 3.5760 1.4239 0.6402 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3287 9 7 3.3138 -1.2399 -0.4185 10 6 4.2370 -2.2640 0.0901 11 6 4.8602 -2.9958 -1.1015 12 6 5.5243 -1.9807 -2.0368 13 1 6.3180 -1.4423 -1.5189 14 6 4.4724 -0.9955 -2.5550 15 1 4.9541 -0.2635 -3.2032 16 6 3.4147 -1.7571 -3.3535 17 6 4.0747 -2.4220 -4.5646 18 6 5.1441 -3.4082 -4.0861 19 7 6.0770 -2.7072 -3.1930 20 6 7.4044 -2.7286 -3.4256 21 8 8.1604 -2.1449 -2.6781 22 6 7.9491 -3.4777 -4.6143 23 6 9.4500 -3.3462 -4.6462 24 6 10.3847 -4.2095 -4.0299 25 6 11.6075 -3.7244 -4.3110 26 8 11.4637 -2.6197 -5.0610 27 6 10.1576 -2.3885 -5.2720 28 6 3.8215 -0.2582 -1.3860 29 1 -0.4851 0.8400 0.0004 30 1 3.6901 -2.9742 0.7103 31 1 5.0221 -1.7917 0.6807 32 1 4.0830 -3.5345 -1.6436 33 1 5.6086 -3.7022 -0.7424 34 1 2.9616 -2.5207 -2.7213 35 1 2.6461 -1.0630 -3.6937 36 1 4.5379 -1.6592 -5.1903 37 1 3.3200 -2.9563 -5.1418 38 1 5.6878 -3.8018 -4.9450 39 1 4.6692 -4.2278 -3.5467 40 1 7.6785 -4.5306 -4.5353 41 1 7.5281 -3.0619 -5.5298 42 1 10.1600 -5.0892 -3.4450 43 1 12.5457 -4.1510 -3.9882 44 1 9.7453 -1.5708 -5.8444 45 1 4.5599 0.3815 -0.9024 46 1 2.9960 0.3510 -1.7541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021570213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:59 Heat of formation + Delta-G solvation = 8.251301 kcal Electronic energy + Delta-G solvation = -27837.130884 eV Core-core repulsion = 24115.143056 eV Total energy + Delta-G solvation = -3721.987828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.67726 -40.44804 -38.27292 -35.75864 -34.14933 -32.75165 -32.54586 -30.87672 -30.33574 -30.00280 -27.95351 -25.67664 -24.79172 -22.76130 -22.33358 -21.74550 -21.46236 -20.77995 -19.29498 -17.98279 -17.54532 -17.19293 -16.73610 -16.01448 -15.56444 -15.42795 -15.28205 -14.82672 -14.48360 -14.13453 -13.91071 -13.74353 -13.37832 -13.07338 -12.93927 -12.85985 -12.77491 -12.53756 -12.34920 -12.30436 -11.86499 -11.75326 -11.67482 -11.02593 -10.81982 -10.62319 -10.53918 -10.43261 -10.11620 -10.01199 -9.89924 -9.68323 -9.50290 -9.41804 -8.67694 -8.61896 -8.36817 -6.98405 -5.96062 -3.31432 1.64314 2.39482 2.72085 3.00158 3.18475 3.31446 3.49064 3.52552 4.52422 4.55705 4.58944 4.64526 4.81514 4.88650 4.95051 5.06580 5.13523 5.19952 5.26221 5.28233 5.36739 5.40298 5.50401 5.59305 5.63910 5.73916 5.84303 5.88558 5.98182 6.00684 6.04669 6.13530 6.21955 6.29906 6.31244 6.35215 6.42032 6.59308 6.61079 6.69890 6.76474 6.81369 6.96682 6.97630 7.57344 7.94408 8.29703 8.31458 8.92572 9.71190 10.09468 11.19887 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.003294 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.594812 B = 8497.568544 C = 8707.045159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.879 3.121 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.086 0.914 9 N -0.603 5.603 10 C 0.150 3.850 11 C -0.141 4.141 12 C 0.155 3.845 13 H 0.095 0.905 14 C -0.108 4.108 15 H 0.059 0.941 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.106 3.894 19 N -0.608 5.608 20 C 0.513 3.487 21 O -0.537 6.537 22 C -0.070 4.070 23 C -0.161 4.161 24 C -0.198 4.198 25 C -0.046 4.046 26 O -0.178 6.178 27 C -0.029 4.029 28 C 0.132 3.868 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.200 0.800 44 H 0.199 0.801 45 H 0.026 0.974 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 -9.515 -13.200 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.709 3.291 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.103 0.897 9 N -0.326 5.326 10 C 0.024 3.976 11 C -0.181 4.181 12 C 0.053 3.947 13 H 0.113 0.887 14 C -0.129 4.129 15 H 0.078 0.922 16 C -0.144 4.144 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.341 5.341 20 C 0.300 3.700 21 O -0.414 6.414 22 C -0.110 4.110 23 C -0.162 4.162 24 C -0.218 4.218 25 C -0.113 4.113 26 O -0.073 6.073 27 C -0.097 4.097 28 C 0.006 3.994 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.217 0.783 44 H 0.216 0.784 45 H 0.043 0.957 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.171 -8.946 -12.878 23.254 hybrid contribution 0.143 0.879 0.056 0.892 sum 17.314 -8.068 -12.822 23.006 Atomic orbital electron populations 1.69825 1.05699 1.26519 1.53105 1.25250 0.95174 0.97444 0.99536 0.87021 0.80157 0.84879 0.77027 1.21687 1.23174 1.19516 1.18884 0.84795 0.94690 1.40037 0.89652 1.44343 1.08591 1.33110 1.46570 1.20876 0.92436 0.91407 0.92915 1.22385 0.99546 0.97942 0.98258 1.21294 0.95355 0.92644 0.85422 0.88744 1.21818 0.95792 0.96992 0.98330 0.92213 1.21450 0.97207 1.00393 0.95314 1.21958 0.97777 0.98733 0.98790 1.21732 0.91546 0.95144 0.93230 1.48513 1.05414 1.52154 1.27972 1.20507 0.81795 0.81109 0.86547 1.90702 1.57004 1.45059 1.48642 1.20038 0.90949 1.02082 0.97921 1.19825 0.95078 0.98161 1.03164 1.21665 0.92221 1.02887 1.04984 1.23931 1.00069 0.88393 0.98933 1.84052 1.27306 1.39481 1.56502 1.23767 0.80134 1.01239 1.04530 1.21281 0.97203 0.91933 0.89002 0.92794 0.91553 0.95795 0.91191 0.92698 0.90010 0.91820 0.92143 0.90967 0.90385 0.91104 0.88140 0.88280 0.83685 0.78280 0.78436 0.95653 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.37 13.97 55.49 0.78 -26.59 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.29 24.34 -169.99 -4.14 18.15 16 4 H -0.29 -7.08 6.61 56.52 0.37 -6.70 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 7 C -0.26 -6.91 10.05 -15.06 -0.15 -7.07 16 8 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 9 N -0.60 -13.84 2.42 -172.63 -0.42 -14.26 16 10 C 0.15 2.92 6.51 -3.74 -0.02 2.90 16 11 C -0.14 -2.32 5.02 -26.59 -0.13 -2.45 16 12 C 0.15 2.56 2.66 -67.32 -0.18 2.38 16 13 H 0.09 1.77 7.06 -51.93 -0.37 1.41 16 14 C -0.11 -1.90 2.45 -90.74 -0.22 -2.12 16 15 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.11 -1.70 4.86 -26.74 -0.13 -1.83 16 17 C -0.13 -1.57 6.08 -26.60 -0.16 -1.73 16 18 C 0.11 1.13 5.85 -3.73 -0.02 1.11 16 19 N -0.61 -8.28 2.66 -164.87 -0.44 -8.72 16 20 C 0.51 7.23 7.70 -10.99 -0.08 7.14 16 21 O -0.54 -9.87 15.49 5.55 0.09 -9.78 16 22 C -0.07 -0.69 4.57 -29.04 -0.13 -0.83 16 23 C -0.16 -1.81 4.66 -104.74 -0.49 -2.30 16 24 C -0.20 -2.12 10.87 -39.70 -0.43 -2.55 16 25 C -0.05 -0.44 12.09 29.42 0.36 -0.09 16 26 O -0.18 -1.99 10.65 5.70 0.06 -1.93 16 27 C -0.03 -0.31 12.01 29.42 0.35 0.04 16 28 C 0.13 2.84 3.60 -3.95 -0.01 2.83 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.14 5.32 -51.93 -0.28 0.86 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.46 6.15 -51.93 -0.32 1.14 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 39 H 0.07 0.75 7.25 -51.92 -0.38 0.37 16 40 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 41 H 0.10 0.76 7.71 -51.93 -0.40 0.35 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.03 0.56 7.06 -51.93 -0.37 0.20 16 46 H 0.08 1.79 4.49 -51.93 -0.23 1.55 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -33.45 350.36 -7.24 -40.69 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.89 Total: 1.10 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.56 Total: -3.94 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.08 Total: -49.57 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.15 Total: -11.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.45 -7.24 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021570213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.939 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds