Wall clock time and date at job start Tue Mar 31 2020 12:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48494 * 109.47081 * 272.79381 * 3 2 1 5 5 H 1.48504 * 109.46919 * 32.79655 * 3 2 1 6 6 H 1.48503 * 109.46927 * 152.78943 * 3 2 1 7 7 C 1.38810 * 120.00449 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99751 * 339.36205 * 7 2 1 9 9 N 1.36937 * 120.00450 * 159.36390 * 7 2 1 10 10 C 1.46963 * 120.77248 * 152.77072 * 9 7 2 11 11 C 1.53098 * 108.62690 * 125.67592 * 10 9 7 12 12 C 1.53171 * 109.57252 * 55.33986 * 11 10 9 13 13 H 1.08999 * 110.66375 * 60.97743 * 12 11 10 14 14 C 1.53151 * 109.58245 * 299.41496 * 12 11 10 15 15 H 1.08998 * 109.24995 * 178.83351 * 14 12 11 16 16 C 1.52857 * 109.35953 * 298.36445 * 14 12 11 17 17 C 1.53119 * 109.34709 * 297.98005 * 16 14 12 18 18 C 1.53141 * 109.48450 * 60.64016 * 17 16 14 19 19 N 1.46946 * 109.02590 * 305.93149 * 18 17 16 20 20 C 1.34776 * 120.84778 * 234.01223 * 19 18 17 21 21 O 1.21285 * 119.99796 * 180.02562 * 20 19 18 22 22 C 1.50698 * 120.00284 * 0.02562 * 20 19 18 23 23 C 1.50699 * 109.47176 * 180.02562 * 22 20 19 24 24 C 1.41384 * 126.58020 * 90.00016 * 23 22 20 25 25 C 1.34513 * 106.83808 * 179.97438 * 24 23 22 26 26 O 1.34297 * 108.42409 * 359.97438 * 25 24 23 27 27 C 1.34312 * 109.47772 * 359.77388 * 26 25 24 28 28 C 1.46890 * 120.77028 * 332.74921 * 9 7 2 29 29 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.61562 * 5.93001 * 10 9 7 31 31 H 1.09002 * 109.75582 * 245.50308 * 10 9 7 32 32 H 1.09000 * 109.45253 * 295.31454 * 11 10 9 33 33 H 1.09000 * 109.43813 * 175.35997 * 11 10 9 34 34 H 1.08998 * 109.49262 * 57.94130 * 16 14 12 35 35 H 1.08999 * 109.49200 * 178.02008 * 16 14 12 36 36 H 1.08998 * 109.47153 * 300.63620 * 17 16 14 37 37 H 1.09001 * 109.46571 * 180.64130 * 17 16 14 38 38 H 1.09001 * 109.54839 * 186.06530 * 18 17 16 39 39 H 1.09008 * 109.54277 * 65.79326 * 18 17 16 40 40 H 1.09004 * 109.46754 * 300.00399 * 22 20 19 41 41 H 1.09003 * 109.46729 * 60.00366 * 22 20 19 42 42 H 1.08001 * 126.57527 * 359.92842 * 24 23 22 43 43 H 1.08000 * 125.78627 * 179.97438 * 25 24 23 44 44 H 1.07992 * 125.79331 * 180.23671 * 27 26 25 45 45 H 1.09000 * 109.52128 * 113.44199 * 28 9 7 46 46 H 1.09004 * 109.51853 * 353.26810 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4385 2.0806 -1.3984 5 1 1.4783 2.6349 0.7584 6 1 3.5760 1.4239 0.6402 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3287 9 7 3.3138 -1.2399 -0.4185 10 6 4.2370 -2.2640 0.0901 11 6 4.8602 -2.9958 -1.1015 12 6 5.5243 -1.9807 -2.0368 13 1 6.3180 -1.4423 -1.5189 14 6 4.4724 -0.9955 -2.5550 15 1 4.9541 -0.2635 -3.2032 16 6 3.4147 -1.7571 -3.3535 17 6 4.0747 -2.4220 -4.5646 18 6 5.1441 -3.4082 -4.0861 19 7 6.0770 -2.7072 -3.1930 20 6 7.4044 -2.7286 -3.4256 21 8 8.1604 -2.1449 -2.6781 22 6 7.9491 -3.4777 -4.6143 23 6 9.4500 -3.3462 -4.6462 24 6 10.3847 -4.2095 -4.0299 25 6 11.6075 -3.7244 -4.3110 26 8 11.4637 -2.6197 -5.0610 27 6 10.1576 -2.3885 -5.2720 28 6 3.8215 -0.2582 -1.3860 29 1 -0.4851 0.8400 0.0004 30 1 3.6901 -2.9742 0.7103 31 1 5.0221 -1.7917 0.6807 32 1 4.0830 -3.5345 -1.6436 33 1 5.6086 -3.7022 -0.7424 34 1 2.9616 -2.5207 -2.7213 35 1 2.6461 -1.0630 -3.6937 36 1 4.5379 -1.6592 -5.1903 37 1 3.3200 -2.9563 -5.1418 38 1 5.6878 -3.8018 -4.9450 39 1 4.6692 -4.2278 -3.5467 40 1 7.6785 -4.5306 -4.5353 41 1 7.5281 -3.0619 -5.5298 42 1 10.1600 -5.0892 -3.4450 43 1 12.5457 -4.1510 -3.9882 44 1 9.7453 -1.5708 -5.8444 45 1 4.5599 0.3815 -0.9024 46 1 2.9960 0.3510 -1.7541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021570213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:58 Heat of formation + Delta-G solvation = -12.952693 kcal Electronic energy + Delta-G solvation = -27838.050358 eV Core-core repulsion = 24115.143056 eV Total energy + Delta-G solvation = -3722.907302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.41457 -41.65165 -39.59381 -37.20847 -35.00878 -34.35200 -33.98182 -32.40906 -31.56279 -31.10395 -28.84845 -27.20265 -26.24430 -24.31920 -23.61938 -22.84828 -22.46964 -21.79680 -20.40456 -19.43556 -18.57188 -18.35187 -18.07208 -17.30516 -16.87228 -16.57080 -16.40537 -16.13052 -15.61049 -15.50830 -15.40234 -15.08218 -14.59058 -14.35994 -14.24029 -14.11018 -13.88236 -13.74313 -13.63996 -13.54144 -13.21980 -13.15264 -12.61669 -12.49130 -12.42029 -12.19905 -11.96651 -11.86107 -11.81751 -11.44869 -11.37214 -11.07416 -10.96234 -10.72861 -10.42433 -9.53680 -9.39498 -8.94817 -8.16850 -5.47351 0.90674 1.25765 1.38617 1.46324 1.59495 1.69119 2.15633 2.35850 2.39440 3.04701 3.31044 3.57963 3.76863 3.85909 3.93753 3.96818 3.99310 4.10797 4.17251 4.17977 4.29841 4.38315 4.55544 4.56591 4.58969 4.63889 4.64717 4.74488 4.80256 4.85194 4.86061 4.88694 4.97022 5.02588 5.11430 5.13659 5.19068 5.30314 5.32845 5.37182 5.58856 5.62754 5.63550 5.86740 6.12904 6.23275 6.54298 6.89621 7.24842 7.61085 8.03289 9.02921 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.003294 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.594812 B = 8497.568544 C = 8707.045159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.027 4.027 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.311 1.311 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.060 0.940 9 N -0.612 5.612 10 C 0.145 3.855 11 C -0.126 4.126 12 C 0.161 3.839 13 H 0.070 0.930 14 C -0.101 4.101 15 H 0.067 0.933 16 C -0.104 4.104 17 C -0.125 4.125 18 C 0.103 3.897 19 N -0.604 5.604 20 C 0.511 3.489 21 O -0.587 6.587 22 C -0.060 4.060 23 C -0.180 4.180 24 C -0.222 4.222 25 C -0.048 4.048 26 O -0.193 6.193 27 C -0.042 4.042 28 C 0.129 3.871 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.232 0.768 44 H 0.219 0.781 45 H 0.019 0.981 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.671 -10.991 -15.611 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.222 4.222 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.240 1.240 6 H -0.195 1.195 7 C -0.366 4.366 8 H 0.077 0.923 9 N -0.336 5.336 10 C 0.019 3.981 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.088 0.912 14 C -0.122 4.122 15 H 0.085 0.915 16 C -0.141 4.141 17 C -0.163 4.163 18 C -0.018 4.018 19 N -0.336 5.336 20 C 0.301 3.699 21 O -0.467 6.467 22 C -0.099 4.099 23 C -0.182 4.182 24 C -0.241 4.241 25 C -0.115 4.115 26 O -0.089 6.089 27 C -0.110 4.110 28 C 0.003 3.997 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.173 0.827 43 H 0.248 0.752 44 H 0.236 0.764 45 H 0.036 0.964 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.176 -10.453 -15.326 26.681 hybrid contribution -0.425 1.265 0.852 1.583 sum 18.751 -9.189 -14.473 25.407 Atomic orbital electron populations 1.69929 1.07072 1.26992 1.55945 1.25743 0.95659 1.00168 1.00654 0.86119 0.78642 0.81471 0.77399 1.20400 1.23989 1.19492 1.18828 0.86280 0.93525 1.37979 0.92269 1.44418 1.07817 1.34104 1.47299 1.21032 0.91844 0.90731 0.94448 1.22191 0.99787 0.97701 0.96890 1.20926 0.94177 0.92518 0.86619 0.91180 1.21681 0.96346 0.97360 0.96776 0.91490 1.21388 0.96514 0.99446 0.96780 1.21911 0.98468 0.99183 0.96761 1.22023 0.91126 0.94506 0.94168 1.48495 1.06022 1.51775 1.27343 1.21274 0.81237 0.80398 0.87021 1.90688 1.58161 1.47238 1.50608 1.20096 0.90015 1.03018 0.96813 1.20135 0.96005 0.98527 1.03507 1.21984 0.92767 1.03643 1.05672 1.24612 1.01298 0.87641 0.97939 1.84052 1.27789 1.40115 1.56909 1.24285 0.80044 1.01798 1.04837 1.21264 0.96366 0.91926 0.90143 0.93008 0.91671 0.95702 0.90644 0.91039 0.92131 0.93704 0.91150 0.88573 0.86020 0.90509 0.85545 0.85164 0.82722 0.75217 0.76430 0.96354 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.97 21.65 0.30 -58.89 16 2 C -0.03 -1.58 5.23 84.86 0.44 -1.14 16 3 Si 0.93 47.25 24.34 68.60 1.67 48.92 16 4 H -0.28 -13.31 6.61 99.48 0.66 -12.66 16 5 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 6 H -0.27 -13.46 6.63 99.48 0.66 -12.80 16 7 C -0.24 -13.11 10.05 84.03 0.84 -12.26 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 9 N -0.61 -28.40 2.42 -700.08 -1.69 -30.10 16 10 C 0.14 5.60 6.51 86.32 0.56 6.16 16 11 C -0.13 -3.94 5.02 30.68 0.15 -3.79 16 12 C 0.16 5.09 2.66 44.94 0.12 5.21 16 13 H 0.07 2.60 7.06 -2.39 -0.02 2.58 16 14 C -0.10 -3.43 2.45 -10.87 -0.03 -3.45 16 15 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.10 -3.17 4.86 30.59 0.15 -3.02 16 17 C -0.13 -2.43 6.08 30.68 0.19 -2.24 16 18 C 0.10 1.70 5.85 86.34 0.51 2.20 16 19 N -0.60 -14.55 2.66 -793.90 -2.11 -16.66 16 20 C 0.51 12.88 7.70 87.66 0.68 13.55 16 21 O -0.59 -20.77 15.49 -3.04 -0.05 -20.82 16 22 C -0.06 -0.94 4.57 29.10 0.13 -0.80 16 23 C -0.18 -3.56 4.66 -19.94 -0.09 -3.66 16 24 C -0.22 -4.26 10.87 22.19 0.24 -4.02 16 25 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 26 O -0.19 -3.99 10.65 -2.51 -0.03 -4.02 16 27 C -0.04 -0.81 12.01 66.97 0.80 -0.01 16 28 C 0.13 5.56 3.60 86.23 0.31 5.87 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.06 2.50 7.94 -2.39 -0.02 2.48 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 2.30 5.32 -2.39 -0.01 2.29 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.11 6.15 -2.39 -0.01 2.09 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.03 5.96 -2.39 -0.01 1.02 16 39 H 0.08 1.25 7.25 -2.38 -0.02 1.23 16 40 H 0.13 1.34 7.94 -2.38 -0.02 1.33 16 41 H 0.13 1.23 7.71 -2.39 -0.02 1.22 16 42 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.22 2.89 8.06 -2.91 -0.02 2.86 16 45 H 0.02 0.82 7.06 -2.39 -0.02 0.80 16 46 H 0.05 2.56 4.49 -2.38 -0.01 2.55 16 Total: -1.00 -75.97 350.36 4.80 -71.18 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.88 Total: 11.81 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.82 Total: -1.43 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.50 Total: -105.64 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.07 Total: -24.84 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.67 Total: 48.92 kcal Total: -75.97 4.80 -71.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021570213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.224 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds