Wall clock time and date at job start Tue Mar 31 2020 12:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47221 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46960 * 120.00457 * 3 2 1 7 7 C 1.38807 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 197.30926 * 7 2 1 9 9 N 1.36939 * 120.00500 * 17.30925 * 7 2 1 10 10 C 1.46967 * 120.77931 * 207.51751 * 9 7 2 11 11 C 1.53092 * 108.62283 * 234.29444 * 10 9 7 12 12 C 1.51502 * 109.15417 * 304.67957 * 11 10 9 13 13 H 1.08998 * 110.22939 * 299.21911 * 12 11 10 14 14 C 1.53141 * 110.47942 * 61.08122 * 12 11 10 15 15 H 1.08999 * 109.25311 * 180.42843 * 14 12 11 16 16 C 1.52852 * 109.37140 * 60.88625 * 14 12 11 17 17 C 1.53120 * 109.36270 * 62.00763 * 16 14 12 18 18 C 1.53141 * 109.47860 * 299.38654 * 17 16 14 19 19 N 1.46948 * 109.04304 * 54.04175 * 18 17 16 20 20 C 1.34773 * 120.84633 * 125.97101 * 19 18 17 21 21 O 1.21278 * 120.00137 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99864 * 0.02562 * 20 19 18 23 23 C 1.50705 * 109.46680 * 180.02562 * 22 20 19 24 24 C 1.34511 * 125.78659 * 89.72556 * 23 22 20 25 25 C 1.41389 * 106.83954 * 179.88695 * 24 23 22 26 26 C 1.34509 * 106.83727 * 0.36847 * 25 24 23 27 27 O 1.34299 * 125.79050 * 270.02665 * 23 22 20 28 28 C 1.46901 * 120.76882 * 27.49768 * 9 7 2 29 29 H 0.97001 * 119.99869 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.61793 * 354.03614 * 10 9 7 31 31 H 1.09005 * 109.61396 * 114.55878 * 10 9 7 32 32 H 1.08999 * 109.45062 * 64.69015 * 11 10 9 33 33 H 1.08995 * 109.45591 * 184.64460 * 11 10 9 34 34 H 1.08994 * 109.49401 * 181.98358 * 16 14 12 35 35 H 1.09002 * 109.49079 * 302.03594 * 16 14 12 36 36 H 1.09005 * 109.46895 * 59.36394 * 17 16 14 37 37 H 1.09004 * 109.47152 * 179.35703 * 17 16 14 38 38 H 1.09000 * 109.52554 * 294.18268 * 18 17 16 39 39 H 1.08997 * 109.62562 * 173.96319 * 18 17 16 40 40 H 1.08991 * 109.47227 * 300.00479 * 22 20 19 41 41 H 1.09001 * 109.46717 * 60.00654 * 22 20 19 42 42 H 1.08005 * 126.58336 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.57626 * 180.16813 * 25 24 23 44 44 H 1.08003 * 125.78688 * 179.79958 * 26 25 24 45 45 H 1.08990 * 109.51757 * 6.75865 * 28 9 7 46 46 H 1.08999 * 109.51383 * 246.59070 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2235 0.2777 9 7 1.3721 -2.3611 -0.3539 10 6 1.8192 -3.6572 0.1753 11 6 2.0852 -4.6001 -1.0011 12 6 0.8408 -4.6855 -1.8609 13 1 0.0075 -5.0806 -1.2799 14 6 0.4823 -3.3068 -2.4230 15 1 -0.4185 -3.3897 -3.0311 16 6 1.6324 -2.7990 -3.2924 17 6 1.8345 -3.7516 -4.4740 18 6 2.1834 -5.1478 -3.9504 19 7 1.1514 -5.5732 -2.9947 20 6 0.5053 -6.7455 -3.1517 21 8 -0.3442 -7.0813 -2.3538 22 6 0.8384 -7.6391 -4.3186 23 6 -0.0190 -8.8773 -4.2637 24 6 -1.2299 -9.0214 -4.8313 25 6 -1.6683 -10.3323 -4.5340 26 6 -0.7025 -10.9080 -3.7957 27 8 0.2941 -10.0221 -3.6352 28 6 0.2244 -2.3377 -1.2705 29 1 -0.4850 0.8401 0.0004 30 1 2.7355 -3.5215 0.7498 31 1 1.0431 -4.0791 0.8140 32 1 2.9148 -4.2154 -1.5942 33 1 2.3381 -5.5904 -0.6226 34 1 1.3943 -1.8028 -3.6649 35 1 2.5457 -2.7567 -2.6989 36 1 0.9171 -3.8027 -5.0605 37 1 2.6469 -3.3850 -5.1015 38 1 3.1522 -5.1183 -3.4518 39 1 2.2225 -5.8514 -4.7820 40 1 0.6476 -7.1064 -5.2502 41 1 1.8898 -7.9223 -4.2707 42 1 -1.7640 -8.2790 -5.4059 43 1 -2.6011 -10.7835 -4.8383 44 1 -0.7245 -11.9125 -3.3996 45 1 0.0935 -1.3299 -1.6644 46 1 -0.6755 -2.6399 -0.7349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021694962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:02 Heat of formation + Delta-G solvation = 4.689715 kcal Electronic energy + Delta-G solvation = -27790.541858 eV Core-core repulsion = 24068.399588 eV Total energy + Delta-G solvation = -3722.142270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62449 -40.38317 -38.10896 -35.55864 -33.30992 -32.79404 -32.63785 -31.89291 -30.26385 -29.47572 -27.27562 -25.59771 -24.69562 -22.53851 -22.05390 -21.83105 -21.46823 -20.68830 -19.17523 -17.86413 -17.46508 -17.18842 -16.65710 -15.96798 -15.40874 -15.39362 -15.08349 -14.54953 -14.29981 -14.03199 -13.60484 -13.48039 -13.17916 -12.93487 -12.89329 -12.83008 -12.70239 -12.50293 -12.27627 -12.21320 -11.84739 -11.55648 -11.12433 -10.96629 -10.74071 -10.64012 -10.47033 -10.12733 -10.08265 -9.99050 -9.97028 -9.75033 -9.61366 -9.40886 -8.51703 -8.50786 -8.26865 -6.68547 -5.79752 -3.21593 1.63345 2.52958 2.70652 2.86536 3.24619 3.37183 3.43406 3.43796 4.43757 4.48374 4.58010 4.85131 4.89945 4.94184 5.09164 5.12229 5.18508 5.19978 5.37051 5.45578 5.47663 5.54263 5.66075 5.72135 5.75970 5.83663 5.88263 6.00346 6.06068 6.08909 6.21518 6.31217 6.41385 6.43181 6.47667 6.53607 6.68150 6.77731 6.90674 6.95309 7.02812 7.05895 7.31123 7.57428 7.66149 7.78259 8.30172 8.43335 9.19808 9.83213 10.40670 11.28881 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.003065 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.747789 B = 9134.661322 C = 9349.200391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.146 3.854 11 C -0.142 4.142 12 C 0.157 3.843 13 H 0.094 0.906 14 C -0.115 4.115 15 H 0.057 0.943 16 C -0.104 4.104 17 C -0.135 4.135 18 C 0.106 3.894 19 N -0.606 5.606 20 C 0.512 3.488 21 O -0.534 6.534 22 C -0.062 4.062 23 C 0.010 3.990 24 C -0.199 4.199 25 C -0.213 4.213 26 C -0.042 4.042 27 O -0.173 6.173 28 C 0.177 3.823 29 H 0.254 0.746 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.092 0.908 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -16.116 -12.869 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.019 3.981 11 C -0.182 4.182 12 C 0.055 3.945 13 H 0.112 0.888 14 C -0.136 4.136 15 H 0.076 0.924 16 C -0.142 4.142 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.339 5.339 20 C 0.299 3.701 21 O -0.411 6.411 22 C -0.101 4.101 23 C -0.041 4.041 24 C -0.218 4.218 25 C -0.232 4.232 26 C -0.109 4.109 27 O -0.069 6.069 28 C 0.050 3.950 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.218 0.782 45 H 0.110 0.890 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.368 -16.177 -12.256 20.433 hybrid contribution 0.143 0.830 -0.162 0.858 sum 2.510 -15.347 -12.418 19.901 Atomic orbital electron populations 1.70023 1.05230 1.25611 1.53779 1.25019 0.95233 0.98333 1.00948 0.86398 0.78922 0.83514 0.78100 1.21064 1.21694 1.20940 1.19102 0.92606 0.84746 1.41552 0.91725 1.44032 1.35528 1.01292 1.50236 1.20873 0.97855 0.86805 0.92559 1.22127 0.97563 0.99480 0.99020 1.21102 0.98494 0.89098 0.85776 0.88796 1.22022 0.97420 0.95022 0.99093 0.92449 1.21432 1.00140 0.97579 0.95000 1.21973 1.01539 0.94931 0.98894 1.21733 0.91481 0.96625 0.91853 1.48594 1.38517 1.19111 1.27630 1.20273 0.81705 0.81644 0.86487 1.90730 1.32509 1.72959 1.44915 1.20172 1.00395 0.89849 0.99728 1.21552 0.96905 0.87051 0.98568 1.21516 0.95768 0.98134 1.06369 1.21787 1.01482 0.95567 1.04399 1.23965 0.87938 0.95604 1.03416 1.83983 1.42093 1.21198 1.59586 1.20712 0.88704 0.98083 0.87467 0.93565 0.92531 0.96252 0.91563 0.93046 0.92041 0.90476 0.92111 0.91215 0.91095 0.90576 0.86128 0.87314 0.83653 0.83552 0.78220 0.88970 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.18 55.49 0.62 -25.09 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.62 9.60 -15.06 -0.14 -6.76 16 8 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -14.16 2.63 -172.63 -0.45 -14.62 16 10 C 0.15 3.03 6.50 -3.74 -0.02 3.01 16 11 C -0.14 -2.47 4.93 -27.44 -0.14 -2.61 16 12 C 0.16 2.76 2.55 -68.17 -0.17 2.59 16 13 H 0.09 1.91 7.10 -51.93 -0.37 1.54 16 14 C -0.11 -2.11 2.50 -90.74 -0.23 -2.34 16 15 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.10 -1.70 4.86 -26.75 -0.13 -1.83 16 17 C -0.14 -1.61 6.08 -26.60 -0.16 -1.78 16 18 C 0.11 1.17 5.84 -3.72 -0.02 1.15 16 19 N -0.61 -8.74 2.62 -165.84 -0.43 -9.17 16 20 C 0.51 7.71 7.70 -10.98 -0.08 7.63 16 21 O -0.53 -10.47 15.51 5.56 0.09 -10.39 16 22 C -0.06 -0.66 4.59 -29.03 -0.13 -0.79 16 23 C 0.01 0.13 5.81 -35.62 -0.21 -0.08 16 24 C -0.20 -2.42 10.81 -39.70 -0.43 -2.85 16 25 C -0.21 -2.33 10.91 -39.70 -0.43 -2.76 16 26 C -0.04 -0.44 12.09 29.41 0.36 -0.09 16 27 O -0.17 -2.29 10.65 5.72 0.06 -2.23 16 28 C 0.18 4.10 4.69 -3.94 -0.02 4.08 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.12 5.26 -51.93 -0.27 0.85 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.39 6.17 -51.93 -0.32 1.07 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.77 7.18 -51.93 -0.37 0.40 16 39 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 40 H 0.12 0.94 7.71 -51.93 -0.40 0.54 16 41 H 0.11 0.92 7.94 -51.93 -0.41 0.51 16 42 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -32.46 356.54 -8.79 -41.25 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.96 Total: 2.12 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.05 Total: -3.43 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.27 Total: -48.88 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.15 Total: -12.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.46 -8.79 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.942 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds