Wall clock time and date at job start Tue Mar 31 2020 12:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47221 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46960 * 120.00457 * 3 2 1 7 7 C 1.38807 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 197.30926 * 7 2 1 9 9 N 1.36939 * 120.00500 * 17.30925 * 7 2 1 10 10 C 1.46967 * 120.77931 * 207.51751 * 9 7 2 11 11 C 1.53092 * 108.62283 * 234.29444 * 10 9 7 12 12 C 1.51502 * 109.15417 * 304.67957 * 11 10 9 13 13 H 1.08998 * 110.22939 * 299.21911 * 12 11 10 14 14 C 1.53141 * 110.47942 * 61.08122 * 12 11 10 15 15 H 1.08999 * 109.25311 * 180.42843 * 14 12 11 16 16 C 1.52852 * 109.37140 * 60.88625 * 14 12 11 17 17 C 1.53120 * 109.36270 * 62.00763 * 16 14 12 18 18 C 1.53141 * 109.47860 * 299.38654 * 17 16 14 19 19 N 1.46948 * 109.04304 * 54.04175 * 18 17 16 20 20 C 1.34773 * 120.84633 * 125.97101 * 19 18 17 21 21 O 1.21278 * 120.00137 * 180.02562 * 20 19 18 22 22 C 1.50705 * 119.99864 * 0.02562 * 20 19 18 23 23 C 1.50705 * 109.46680 * 180.02562 * 22 20 19 24 24 C 1.34511 * 125.78659 * 89.72556 * 23 22 20 25 25 C 1.41389 * 106.83954 * 179.88695 * 24 23 22 26 26 C 1.34509 * 106.83727 * 0.36847 * 25 24 23 27 27 O 1.34299 * 125.79050 * 270.02665 * 23 22 20 28 28 C 1.46901 * 120.76882 * 27.49768 * 9 7 2 29 29 H 0.97001 * 119.99869 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.61793 * 354.03614 * 10 9 7 31 31 H 1.09005 * 109.61396 * 114.55878 * 10 9 7 32 32 H 1.08999 * 109.45062 * 64.69015 * 11 10 9 33 33 H 1.08995 * 109.45591 * 184.64460 * 11 10 9 34 34 H 1.08994 * 109.49401 * 181.98358 * 16 14 12 35 35 H 1.09002 * 109.49079 * 302.03594 * 16 14 12 36 36 H 1.09005 * 109.46895 * 59.36394 * 17 16 14 37 37 H 1.09004 * 109.47152 * 179.35703 * 17 16 14 38 38 H 1.09000 * 109.52554 * 294.18268 * 18 17 16 39 39 H 1.08997 * 109.62562 * 173.96319 * 18 17 16 40 40 H 1.08991 * 109.47227 * 300.00479 * 22 20 19 41 41 H 1.09001 * 109.46717 * 60.00654 * 22 20 19 42 42 H 1.08005 * 126.58336 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.57626 * 180.16813 * 25 24 23 44 44 H 1.08003 * 125.78688 * 179.79958 * 26 25 24 45 45 H 1.08990 * 109.51757 * 6.75865 * 28 9 7 46 46 H 1.08999 * 109.51383 * 246.59070 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2235 0.2777 9 7 1.3721 -2.3611 -0.3539 10 6 1.8192 -3.6572 0.1753 11 6 2.0852 -4.6001 -1.0011 12 6 0.8408 -4.6855 -1.8609 13 1 0.0075 -5.0806 -1.2799 14 6 0.4823 -3.3068 -2.4230 15 1 -0.4185 -3.3897 -3.0311 16 6 1.6324 -2.7990 -3.2924 17 6 1.8345 -3.7516 -4.4740 18 6 2.1834 -5.1478 -3.9504 19 7 1.1514 -5.5732 -2.9947 20 6 0.5053 -6.7455 -3.1517 21 8 -0.3442 -7.0813 -2.3538 22 6 0.8384 -7.6391 -4.3186 23 6 -0.0190 -8.8773 -4.2637 24 6 -1.2299 -9.0214 -4.8313 25 6 -1.6683 -10.3323 -4.5340 26 6 -0.7025 -10.9080 -3.7957 27 8 0.2941 -10.0221 -3.6352 28 6 0.2244 -2.3377 -1.2705 29 1 -0.4850 0.8401 0.0004 30 1 2.7355 -3.5215 0.7498 31 1 1.0431 -4.0791 0.8140 32 1 2.9148 -4.2154 -1.5942 33 1 2.3381 -5.5904 -0.6226 34 1 1.3943 -1.8028 -3.6649 35 1 2.5457 -2.7567 -2.6989 36 1 0.9171 -3.8027 -5.0605 37 1 2.6469 -3.3850 -5.1015 38 1 3.1522 -5.1183 -3.4518 39 1 2.2225 -5.8514 -4.7820 40 1 0.6476 -7.1064 -5.2502 41 1 1.8898 -7.9223 -4.2707 42 1 -1.7640 -8.2790 -5.4059 43 1 -2.6011 -10.7835 -4.8383 44 1 -0.7245 -11.9125 -3.3996 45 1 0.0935 -1.3299 -1.6644 46 1 -0.6755 -2.6399 -0.7349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021694962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:00 Heat of formation + Delta-G solvation = -14.484817 kcal Electronic energy + Delta-G solvation = -27791.373328 eV Core-core repulsion = 24068.399588 eV Total energy + Delta-G solvation = -3722.973740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.46618 -41.65980 -39.51134 -37.08176 -34.56152 -34.05107 -33.95595 -32.99629 -31.77658 -31.09439 -28.27805 -27.20970 -26.13268 -24.06880 -23.53317 -22.86521 -22.65985 -21.71815 -20.39535 -19.41589 -18.53056 -18.37695 -18.04186 -17.05677 -16.91457 -16.57081 -16.42944 -15.98223 -15.48040 -15.39196 -15.07771 -15.00736 -14.54861 -14.29668 -13.98092 -13.86986 -13.73018 -13.68599 -13.53033 -13.49347 -13.14694 -12.89998 -12.68580 -12.57351 -12.49047 -12.20475 -11.97823 -11.84975 -11.75538 -11.43828 -11.32770 -11.08460 -10.86512 -10.75799 -10.51377 -9.54575 -9.36518 -8.69279 -7.86063 -5.31371 0.77191 1.48690 1.50195 1.57314 1.60733 1.67422 1.99867 2.24185 2.52404 3.29576 3.51261 3.63345 3.69591 3.90882 3.97887 4.01822 4.14238 4.15996 4.17694 4.25952 4.37790 4.38185 4.43199 4.51876 4.62073 4.67541 4.73532 4.88996 4.94386 4.97048 5.00261 5.02728 5.06034 5.14099 5.17303 5.22713 5.25743 5.31899 5.46554 5.60656 5.61643 5.63575 5.68794 5.71769 6.22162 6.38764 6.49629 7.14442 7.17009 7.84565 8.38768 9.20842 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.003065 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.747789 B = 9134.661322 C = 9349.200391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.256 4.256 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.142 3.858 11 C -0.124 4.124 12 C 0.163 3.837 13 H 0.057 0.943 14 C -0.103 4.103 15 H 0.055 0.945 16 C -0.099 4.099 17 C -0.126 4.126 18 C 0.100 3.900 19 N -0.602 5.602 20 C 0.508 3.492 21 O -0.590 6.590 22 C -0.051 4.051 23 C -0.015 4.015 24 C -0.214 4.214 25 C -0.230 4.230 26 C -0.044 4.044 27 O -0.193 6.193 28 C 0.187 3.813 29 H 0.249 0.751 30 H 0.063 0.937 31 H 0.002 0.998 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.235 0.765 45 H 0.062 0.938 46 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -17.627 -15.458 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.089 0.911 9 N -0.324 5.324 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.060 3.940 13 H 0.076 0.924 14 C -0.124 4.124 15 H 0.073 0.927 16 C -0.136 4.136 17 C -0.164 4.164 18 C -0.021 4.021 19 N -0.334 5.334 20 C 0.297 3.703 21 O -0.471 6.471 22 C -0.090 4.090 23 C -0.065 4.065 24 C -0.234 4.234 25 C -0.249 4.249 26 C -0.111 4.111 27 O -0.090 6.090 28 C 0.060 3.940 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.172 0.828 43 H 0.184 0.816 44 H 0.252 0.748 45 H 0.080 0.920 46 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges 4.849 -17.711 -14.879 23.634 hybrid contribution -0.694 1.243 0.719 1.595 sum 4.155 -16.468 -14.160 22.112 Atomic orbital electron populations 1.70205 1.06836 1.25845 1.55576 1.25788 0.95899 1.01520 1.01348 0.85355 0.77513 0.79205 0.78467 1.19912 1.22488 1.20286 1.19455 0.92953 0.85640 1.40504 0.91142 1.44231 1.35386 1.01990 1.50776 1.21000 0.97347 0.86116 0.94004 1.21914 0.97754 0.99106 0.97563 1.20653 0.97410 0.88940 0.86990 0.92422 1.21781 0.98686 0.94512 0.97430 0.92695 1.21346 0.97888 0.98185 0.96212 1.21928 1.03195 0.94237 0.97011 1.22105 0.90438 0.97025 0.92517 1.48552 1.39174 1.18517 1.27120 1.21104 0.80495 0.81702 0.86973 1.90712 1.34975 1.74174 1.47210 1.20276 1.01759 0.88277 0.98665 1.21973 0.97752 0.87696 0.99083 1.21872 0.95949 0.98998 1.06534 1.22163 1.02549 0.95434 1.04721 1.24742 0.87150 0.96568 1.02669 1.83971 1.43134 1.21829 1.60018 1.20451 0.87310 0.97636 0.88584 0.94221 0.91866 0.98012 0.90032 0.91616 0.93615 0.91876 0.91440 0.88081 0.90047 0.85811 0.82544 0.84244 0.82755 0.81566 0.74834 0.91992 1.00244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.92 11.18 21.65 0.24 -55.68 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 3 Si 0.97 44.26 29.59 68.60 2.03 46.29 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.26 -13.75 9.60 84.03 0.81 -12.94 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.60 -29.94 2.63 -700.07 -1.84 -31.78 16 10 C 0.14 6.01 6.50 86.32 0.56 6.57 16 11 C -0.12 -4.21 4.93 30.13 0.15 -4.06 16 12 C 0.16 5.78 2.55 44.39 0.11 5.89 16 13 H 0.06 2.47 7.10 -2.39 -0.02 2.45 16 14 C -0.10 -3.89 2.50 -10.87 -0.03 -3.92 16 15 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 16 C -0.10 -3.10 4.86 30.59 0.15 -2.95 16 17 C -0.13 -2.50 6.08 30.68 0.19 -2.31 16 18 C 0.10 1.72 5.84 86.34 0.50 2.23 16 19 N -0.60 -15.98 2.62 -796.98 -2.09 -18.06 16 20 C 0.51 14.32 7.70 87.66 0.68 15.00 16 21 O -0.59 -23.30 15.51 -3.02 -0.05 -23.35 16 22 C -0.05 -0.90 4.59 29.10 0.13 -0.76 16 23 C -0.01 -0.35 5.81 24.83 0.14 -0.21 16 24 C -0.21 -4.90 10.81 22.19 0.24 -4.66 16 25 C -0.23 -4.65 10.91 22.19 0.24 -4.41 16 26 C -0.04 -0.86 12.09 66.97 0.81 -0.05 16 27 O -0.19 -4.79 10.65 -2.45 -0.03 -4.81 16 28 C 0.19 9.19 4.69 86.23 0.40 9.59 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.06 2.56 7.94 -2.39 -0.02 2.54 16 31 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 32 H 0.08 2.56 5.26 -2.39 -0.01 2.55 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 2.17 6.17 -2.39 -0.01 2.15 16 36 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.32 7.18 -2.39 -0.02 1.31 16 39 H 0.12 1.05 5.96 -2.39 -0.01 1.04 16 40 H 0.16 1.61 7.71 -2.39 -0.02 1.59 16 41 H 0.14 1.63 7.94 -2.39 -0.02 1.61 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.24 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.06 3.41 6.03 -2.39 -0.01 3.39 16 46 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 Total: -1.00 -76.44 356.54 4.76 -71.69 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.97 Total: 15.09 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.51 Total: 0.62 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.68 Total: -105.52 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.07 Total: -28.16 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -76.44 4.76 -71.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.204 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds