Wall clock time and date at job start Tue Mar 31 2020 12:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48505 * 109.46856 * 264.86890 * 3 2 1 5 5 H 1.48496 * 109.47095 * 24.87302 * 3 2 1 6 6 H 1.48502 * 109.46709 * 144.87273 * 3 2 1 7 7 C 1.38822 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99550 * 197.01521 * 7 2 1 9 9 N 1.36931 * 119.99983 * 17.01471 * 7 2 1 10 10 C 1.46867 * 120.47158 * 27.48802 * 9 7 2 11 11 C 1.53310 * 109.10285 * 127.33147 * 10 9 7 12 12 C 1.52889 * 108.94685 * 54.10322 * 11 10 9 13 13 H 1.09000 * 109.70548 * 57.90756 * 12 11 10 14 14 C 1.53268 * 109.16501 * 297.87850 * 12 11 10 15 15 H 1.08999 * 109.47525 * 303.54533 * 14 12 11 16 16 C 1.52824 * 109.17003 * 183.72744 * 14 12 11 17 17 C 1.53150 * 109.26214 * 61.81209 * 16 14 12 18 18 C 1.53596 * 109.53840 * 299.00776 * 17 16 14 19 19 N 1.46721 * 110.29461 * 178.63841 * 12 11 10 20 20 C 1.34774 * 120.84467 * 353.95378 * 19 12 11 21 21 O 1.21278 * 119.99956 * 354.86479 * 20 19 12 22 22 C 1.50698 * 119.99873 * 174.86111 * 20 19 12 23 23 C 1.50703 * 109.46898 * 180.02562 * 22 20 19 24 24 C 1.34514 * 125.78724 * 90.00298 * 23 22 20 25 25 C 1.41383 * 106.84099 * 180.02562 * 24 23 22 26 26 C 1.34513 * 106.84190 * 0.02562 * 25 24 23 27 27 O 1.34303 * 125.78931 * 270.02471 * 23 22 20 28 28 C 1.47068 * 120.46881 * 207.46799 * 9 7 2 29 29 H 0.96996 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.53008 * 247.22006 * 10 9 7 31 31 H 1.08996 * 109.53101 * 7.36559 * 10 9 7 32 32 H 1.09000 * 109.56135 * 294.26086 * 11 10 9 33 33 H 1.09003 * 109.55888 * 173.94335 * 11 10 9 34 34 H 1.08998 * 109.50596 * 181.74695 * 16 14 12 35 35 H 1.08995 * 109.50624 * 301.87844 * 16 14 12 36 36 H 1.08998 * 109.44963 * 59.20069 * 17 16 14 37 37 H 1.09000 * 109.44263 * 179.13569 * 17 16 14 38 38 H 1.09000 * 109.71481 * 294.43669 * 18 17 16 39 39 H 1.08993 * 109.61927 * 174.02154 * 18 17 16 40 40 H 1.08994 * 109.46831 * 60.00584 * 22 20 19 41 41 H 1.09000 * 109.46902 * 300.00219 * 22 20 19 42 42 H 1.08000 * 126.57763 * 359.97438 * 24 23 22 43 43 H 1.08000 * 126.58269 * 180.02562 * 25 24 23 44 44 H 1.07995 * 125.79490 * 179.73725 * 26 25 24 45 45 H 1.08995 * 109.69674 * 113.62769 * 28 9 7 46 46 H 1.09003 * 109.72352 * 353.05930 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6061 1.9838 -1.3945 5 1 1.3977 2.6815 0.5889 6 1 3.4894 1.4738 0.8056 7 6 2.0103 -1.2023 -0.0005 8 1 3.0548 -1.2228 0.2732 9 7 1.3705 -2.3620 -0.3481 10 6 0.2195 -2.3332 -1.2598 11 6 0.4645 -3.3186 -2.4084 12 6 0.7812 -4.6949 -1.8228 13 1 -0.0423 -5.0226 -1.1883 14 6 2.0648 -4.6042 -0.9903 15 1 2.8739 -4.2187 -1.6107 16 6 2.4325 -5.9976 -0.4816 17 6 2.7004 -6.9173 -1.6766 18 6 1.4322 -7.0249 -2.5364 19 7 0.9894 -5.6702 -2.8990 20 6 0.7748 -5.3348 -4.1866 21 8 0.3164 -4.2461 -4.4613 22 6 1.1046 -6.3125 -5.2849 23 6 0.7744 -5.6976 -6.6205 24 6 1.6117 -4.9675 -7.3789 25 6 0.8937 -4.5935 -8.5381 26 6 -0.3396 -5.1171 -8.4185 27 8 -0.4059 -5.7855 -7.2553 28 6 1.8267 -3.6541 0.1860 29 1 -0.4849 0.8400 -0.0004 30 1 -0.6815 -2.6214 -0.7183 31 1 0.0974 -1.3271 -1.6609 32 1 1.3061 -2.9756 -3.0102 33 1 -0.4284 -3.3833 -3.0304 34 1 3.3277 -5.9347 0.1370 35 1 1.6087 -6.3987 0.1087 36 1 3.5141 -6.5073 -2.2748 37 1 2.9780 -7.9081 -1.3169 38 1 0.6464 -7.5264 -1.9715 39 1 1.6506 -7.5915 -3.4415 40 1 0.5200 -7.2223 -5.1489 41 1 2.1668 -6.5543 -5.2492 42 1 2.6356 -4.7146 -7.1465 43 1 1.2643 -4.0012 -9.3616 44 1 -1.1416 -5.0143 -9.1344 45 1 1.0639 -4.0692 0.8447 46 1 2.7550 -3.5160 0.7403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021694964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:05 Heat of formation + Delta-G solvation = 17.240633 kcal Electronic energy + Delta-G solvation = -27903.069498 eV Core-core repulsion = 24181.471477 eV Total energy + Delta-G solvation = -3721.598021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55816 -40.41057 -37.75133 -35.83009 -33.32866 -32.99786 -32.59549 -31.87290 -29.95906 -29.39071 -27.23224 -25.52654 -24.57763 -22.55129 -22.38161 -21.76024 -20.88691 -20.21898 -19.38607 -18.91610 -17.36406 -16.87437 -16.51659 -15.82553 -15.60513 -15.37549 -14.67286 -14.48156 -14.40505 -14.13559 -13.69913 -13.60617 -13.21297 -12.83273 -12.81546 -12.72736 -12.61804 -12.52586 -12.27217 -12.09032 -11.72839 -11.28977 -11.18954 -10.93517 -10.91916 -10.79097 -10.51662 -10.29556 -10.19018 -9.89620 -9.87793 -9.86654 -9.37569 -8.72804 -8.40813 -8.36271 -8.24910 -6.59802 -5.71067 -3.13716 1.69639 2.59832 2.76277 2.92646 3.26369 3.43335 3.49655 3.50100 4.49056 4.53955 4.59327 4.79015 4.87997 4.93844 4.99905 5.05569 5.14391 5.22446 5.28985 5.39799 5.45370 5.49536 5.66204 5.71498 5.79434 5.87142 5.90950 5.93461 6.02875 6.07930 6.13207 6.25450 6.39176 6.42220 6.49108 6.54145 6.72816 6.79501 6.96642 7.01998 7.12259 7.22497 7.54658 7.64624 7.78925 7.87881 8.42458 8.52463 9.28616 9.92145 10.47599 11.36784 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.004118 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.210847 B = 6797.461994 C = 8334.230004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.166 3.834 11 C -0.129 4.129 12 C 0.159 3.841 13 H 0.064 0.936 14 C -0.114 4.114 15 H 0.069 0.931 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.105 3.895 19 N -0.609 5.609 20 C 0.511 3.489 21 O -0.511 6.511 22 C -0.064 4.064 23 C 0.009 3.991 24 C -0.197 4.197 25 C -0.212 4.212 26 C -0.042 4.042 27 O -0.173 6.173 28 C 0.156 3.844 29 H 0.253 0.747 30 H 0.014 0.986 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.201 0.799 45 H 0.018 0.982 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -18.391 -11.322 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.040 3.960 11 C -0.168 4.168 12 C 0.058 3.942 13 H 0.082 0.918 14 C -0.135 4.135 15 H 0.088 0.912 16 C -0.152 4.152 17 C -0.171 4.171 18 C -0.018 4.018 19 N -0.343 5.343 20 C 0.298 3.702 21 O -0.386 6.386 22 C -0.103 4.103 23 C -0.041 4.041 24 C -0.216 4.216 25 C -0.231 4.231 26 C -0.109 4.109 27 O -0.069 6.069 28 C 0.029 3.971 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.217 0.783 45 H 0.036 0.964 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.335 -17.783 -11.331 21.215 hybrid contribution 0.646 0.934 -0.114 1.141 sum 2.981 -16.849 -11.445 20.586 Atomic orbital electron populations 1.70035 1.05247 1.25450 1.53869 1.25019 0.95259 0.98331 1.00939 0.86326 0.79013 0.83722 0.77803 1.21416 1.21762 1.20552 1.19177 0.92538 0.84969 1.41640 0.91795 1.44137 1.35241 1.01237 1.50940 1.20990 0.88129 0.98766 0.88101 1.22694 1.02762 0.92481 0.98836 1.21332 0.96718 0.89321 0.86847 0.91793 1.22092 0.97348 0.94871 0.99163 0.91207 1.21524 1.01520 0.95337 0.96841 1.21984 0.97295 1.00144 0.97657 1.21844 0.96778 0.83561 0.99590 1.48294 1.67186 1.12778 1.06067 1.20272 0.78855 0.88043 0.83042 1.90818 1.42831 1.22485 1.82474 1.20223 1.04105 0.98821 0.87191 1.21514 0.83918 1.03446 0.95260 1.21513 1.01566 1.02727 0.95806 1.21786 0.94799 1.05794 1.00753 1.23953 0.99697 0.99141 0.88139 1.83977 1.34349 1.59469 1.29125 1.20857 0.97658 0.86600 0.92019 0.93660 0.96759 0.89315 0.92355 0.90071 0.91734 0.91995 0.91614 0.91125 0.91299 0.90296 0.87568 0.86316 0.83689 0.83578 0.78251 0.96445 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 11.16 55.49 0.62 -26.43 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.39 29.59 -169.99 -5.03 17.36 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -7.16 9.58 -15.06 -0.14 -7.30 16 8 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.30 3.00 -172.26 -0.52 -15.82 16 10 C 0.17 4.24 5.27 -3.68 -0.02 4.22 16 11 C -0.13 -2.80 3.82 -26.63 -0.10 -2.91 16 12 C 0.16 2.82 2.63 -67.73 -0.18 2.65 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.11 -1.94 2.21 -90.54 -0.20 -2.14 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.11 -1.43 5.24 -26.74 -0.14 -1.57 16 17 C -0.13 -1.29 6.08 -26.34 -0.16 -1.45 16 18 C 0.11 1.02 6.38 -3.43 -0.02 1.00 16 19 N -0.61 -8.68 2.96 -165.04 -0.49 -9.17 16 20 C 0.51 7.83 7.57 -10.99 -0.08 7.75 16 21 O -0.51 -10.20 11.70 5.56 0.07 -10.13 16 22 C -0.06 -0.69 4.60 -29.03 -0.13 -0.83 16 23 C 0.01 0.12 5.81 -35.62 -0.21 -0.09 16 24 C -0.20 -2.56 10.81 -39.70 -0.43 -2.99 16 25 C -0.21 -2.50 10.91 -39.70 -0.43 -2.93 16 26 C -0.04 -0.47 12.09 29.42 0.36 -0.12 16 27 O -0.17 -2.38 10.65 5.68 0.06 -2.32 16 28 C 0.16 3.25 5.86 -3.70 -0.02 3.23 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.56 6.03 -51.93 -0.31 2.25 16 32 H 0.06 1.39 7.46 -51.93 -0.39 1.00 16 33 H 0.08 1.84 6.11 -51.93 -0.32 1.52 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 40 H 0.11 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.12 0.96 7.92 -51.93 -0.41 0.55 16 42 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -34.38 356.95 -9.09 -43.47 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.17 Total: 1.13 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.00 Total: -3.46 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.39 Total: -51.42 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.13 Total: -12.45 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.38 -9.09 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.712 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds