Wall clock time and date at job start Tue Mar 31 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48505 * 109.46856 * 264.86890 * 3 2 1 5 5 H 1.48496 * 109.47095 * 24.87302 * 3 2 1 6 6 H 1.48502 * 109.46709 * 144.87273 * 3 2 1 7 7 C 1.38822 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99550 * 197.01521 * 7 2 1 9 9 N 1.36931 * 119.99983 * 17.01471 * 7 2 1 10 10 C 1.46867 * 120.47158 * 27.48802 * 9 7 2 11 11 C 1.53310 * 109.10285 * 127.33147 * 10 9 7 12 12 C 1.52889 * 108.94685 * 54.10322 * 11 10 9 13 13 H 1.09000 * 109.70548 * 57.90756 * 12 11 10 14 14 C 1.53268 * 109.16501 * 297.87850 * 12 11 10 15 15 H 1.08999 * 109.47525 * 303.54533 * 14 12 11 16 16 C 1.52824 * 109.17003 * 183.72744 * 14 12 11 17 17 C 1.53150 * 109.26214 * 61.81209 * 16 14 12 18 18 C 1.53596 * 109.53840 * 299.00776 * 17 16 14 19 19 N 1.46721 * 110.29461 * 178.63841 * 12 11 10 20 20 C 1.34774 * 120.84467 * 353.95378 * 19 12 11 21 21 O 1.21278 * 119.99956 * 354.86479 * 20 19 12 22 22 C 1.50698 * 119.99873 * 174.86111 * 20 19 12 23 23 C 1.50703 * 109.46898 * 180.02562 * 22 20 19 24 24 C 1.34514 * 125.78724 * 90.00298 * 23 22 20 25 25 C 1.41383 * 106.84099 * 180.02562 * 24 23 22 26 26 C 1.34513 * 106.84190 * 0.02562 * 25 24 23 27 27 O 1.34303 * 125.78931 * 270.02471 * 23 22 20 28 28 C 1.47068 * 120.46881 * 207.46799 * 9 7 2 29 29 H 0.96996 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.53008 * 247.22006 * 10 9 7 31 31 H 1.08996 * 109.53101 * 7.36559 * 10 9 7 32 32 H 1.09000 * 109.56135 * 294.26086 * 11 10 9 33 33 H 1.09003 * 109.55888 * 173.94335 * 11 10 9 34 34 H 1.08998 * 109.50596 * 181.74695 * 16 14 12 35 35 H 1.08995 * 109.50624 * 301.87844 * 16 14 12 36 36 H 1.08998 * 109.44963 * 59.20069 * 17 16 14 37 37 H 1.09000 * 109.44263 * 179.13569 * 17 16 14 38 38 H 1.09000 * 109.71481 * 294.43669 * 18 17 16 39 39 H 1.08993 * 109.61927 * 174.02154 * 18 17 16 40 40 H 1.08994 * 109.46831 * 60.00584 * 22 20 19 41 41 H 1.09000 * 109.46902 * 300.00219 * 22 20 19 42 42 H 1.08000 * 126.57763 * 359.97438 * 24 23 22 43 43 H 1.08000 * 126.58269 * 180.02562 * 25 24 23 44 44 H 1.07995 * 125.79490 * 179.73725 * 26 25 24 45 45 H 1.08995 * 109.69674 * 113.62769 * 28 9 7 46 46 H 1.09003 * 109.72352 * 353.05930 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6061 1.9838 -1.3945 5 1 1.3977 2.6815 0.5889 6 1 3.4894 1.4738 0.8056 7 6 2.0103 -1.2023 -0.0005 8 1 3.0548 -1.2228 0.2732 9 7 1.3705 -2.3620 -0.3481 10 6 0.2195 -2.3332 -1.2598 11 6 0.4645 -3.3186 -2.4084 12 6 0.7812 -4.6949 -1.8228 13 1 -0.0423 -5.0226 -1.1883 14 6 2.0648 -4.6042 -0.9903 15 1 2.8739 -4.2187 -1.6107 16 6 2.4325 -5.9976 -0.4816 17 6 2.7004 -6.9173 -1.6766 18 6 1.4322 -7.0249 -2.5364 19 7 0.9894 -5.6702 -2.8990 20 6 0.7748 -5.3348 -4.1866 21 8 0.3164 -4.2461 -4.4613 22 6 1.1046 -6.3125 -5.2849 23 6 0.7744 -5.6976 -6.6205 24 6 1.6117 -4.9675 -7.3789 25 6 0.8937 -4.5935 -8.5381 26 6 -0.3396 -5.1171 -8.4185 27 8 -0.4059 -5.7855 -7.2553 28 6 1.8267 -3.6541 0.1860 29 1 -0.4849 0.8400 -0.0004 30 1 -0.6815 -2.6214 -0.7183 31 1 0.0974 -1.3271 -1.6609 32 1 1.3061 -2.9756 -3.0102 33 1 -0.4284 -3.3833 -3.0304 34 1 3.3277 -5.9347 0.1370 35 1 1.6087 -6.3987 0.1087 36 1 3.5141 -6.5073 -2.2748 37 1 2.9780 -7.9081 -1.3169 38 1 0.6464 -7.5264 -1.9715 39 1 1.6506 -7.5915 -3.4415 40 1 0.5200 -7.2223 -5.1489 41 1 2.1668 -6.5543 -5.2492 42 1 2.6356 -4.7146 -7.1465 43 1 1.2643 -4.0012 -9.3616 44 1 -1.1416 -5.0143 -9.1344 45 1 1.0639 -4.0692 0.8447 46 1 2.7550 -3.5160 0.7403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021694964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:04 Heat of formation + Delta-G solvation = -4.379256 kcal Electronic energy + Delta-G solvation = -27904.007007 eV Core-core repulsion = 24181.471477 eV Total energy + Delta-G solvation = -3722.535530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.46986 -41.66752 -39.16574 -37.36107 -34.74481 -34.11567 -33.91352 -33.11208 -31.67707 -30.89121 -28.29994 -27.14753 -25.94488 -24.11672 -23.91759 -22.67803 -21.98631 -21.42327 -21.02808 -20.01083 -18.71665 -18.26513 -17.83798 -17.06750 -16.82216 -16.57891 -16.43625 -15.62968 -15.56522 -15.37577 -15.36821 -15.05219 -14.49675 -14.31070 -13.96343 -13.79769 -13.73876 -13.60940 -13.55280 -13.46050 -13.06336 -12.97026 -12.72407 -12.61035 -12.33495 -12.20399 -12.02481 -11.93435 -11.83477 -11.65116 -11.46011 -11.08609 -10.82333 -10.56094 -10.12083 -9.48976 -9.35460 -8.70569 -7.89245 -5.35503 0.76927 1.41665 1.45349 1.52726 1.63742 1.68240 2.01437 2.25018 2.47954 3.25002 3.53944 3.62348 3.69730 3.86622 3.94304 4.05245 4.14605 4.15700 4.17385 4.31533 4.34602 4.36845 4.45742 4.57409 4.62524 4.73425 4.79525 4.89632 4.92171 4.93213 4.96499 5.01857 5.02373 5.16978 5.21054 5.24000 5.31309 5.40432 5.49898 5.55056 5.61825 5.61987 5.65786 5.74251 6.21317 6.35340 6.53089 7.10864 7.26543 7.82991 8.34038 9.16523 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.004118 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.210847 B = 6797.461994 C = 8334.230004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.104 4.104 12 C 0.166 3.834 13 H 0.063 0.937 14 C -0.099 4.099 15 H 0.049 0.951 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.097 3.903 19 N -0.606 5.606 20 C 0.502 3.498 21 O -0.571 6.571 22 C -0.051 4.051 23 C -0.012 4.012 24 C -0.216 4.216 25 C -0.230 4.230 26 C -0.044 4.044 27 O -0.192 6.192 28 C 0.151 3.849 29 H 0.249 0.751 30 H -0.007 1.007 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.165 0.835 44 H 0.235 0.765 45 H 0.019 0.981 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -21.708 -11.864 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.050 3.950 11 C -0.143 4.143 12 C 0.063 3.937 13 H 0.081 0.919 14 C -0.120 4.120 15 H 0.068 0.932 16 C -0.147 4.147 17 C -0.164 4.164 18 C -0.024 4.024 19 N -0.339 5.339 20 C 0.291 3.709 21 O -0.450 6.450 22 C -0.090 4.090 23 C -0.062 4.062 24 C -0.235 4.235 25 C -0.249 4.249 26 C -0.111 4.111 27 O -0.088 6.088 28 C 0.025 3.975 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.183 0.817 44 H 0.252 0.748 45 H 0.037 0.963 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.036 -21.181 -11.857 24.607 hybrid contribution 0.112 1.958 0.042 1.962 sum 4.148 -19.222 -11.815 22.942 Atomic orbital electron populations 1.70201 1.06821 1.25801 1.55405 1.25833 0.96047 1.01662 1.01265 0.85287 0.78212 0.79427 0.77588 1.21653 1.21854 1.18797 1.19553 0.92938 0.86246 1.40830 0.91382 1.44379 1.35088 1.02603 1.51484 1.20705 0.87744 0.97517 0.89022 1.22298 1.01070 0.94516 0.96425 1.20948 0.97069 0.87896 0.87826 0.91945 1.21862 0.96136 0.97014 0.96967 0.93201 1.21515 1.02244 0.92497 0.98488 1.21981 0.97091 1.01206 0.96108 1.22298 0.97248 0.80953 1.01882 1.48315 1.66734 1.13929 1.04900 1.21126 0.77614 0.88098 0.84028 1.90792 1.45556 1.25319 1.83340 1.20298 1.06683 0.98070 0.83925 1.21973 0.83836 1.04161 0.96255 1.21843 1.02233 1.02878 0.96560 1.22150 0.95177 1.06377 1.01222 1.24718 1.00597 0.97950 0.87848 1.83969 1.34808 1.60065 1.30002 1.21074 0.97463 0.85240 0.93704 0.94196 0.98859 0.93606 0.94993 0.91366 0.90763 0.91069 0.91824 0.87244 0.89682 0.86256 0.84183 0.82854 0.83066 0.81749 0.74850 0.96269 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 11.16 21.65 0.24 -58.71 16 2 C -0.05 -3.13 4.91 84.86 0.42 -2.71 16 3 Si 0.97 47.35 29.59 68.60 2.03 49.38 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.27 -15.46 9.58 84.04 0.81 -14.66 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -32.90 3.00 -698.90 -2.10 -35.00 16 10 C 0.18 9.62 5.27 86.41 0.46 10.07 16 11 C -0.10 -4.79 3.82 30.66 0.12 -4.68 16 12 C 0.17 5.85 2.63 45.00 0.12 5.97 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.10 -3.29 2.21 -10.74 -0.02 -3.32 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.11 -2.37 5.24 30.59 0.16 -2.21 16 17 C -0.13 -1.80 6.08 30.84 0.19 -1.61 16 18 C 0.10 1.40 6.38 86.47 0.55 1.95 16 19 N -0.61 -15.99 2.96 -794.47 -2.35 -18.35 16 20 C 0.50 14.77 7.57 87.66 0.66 15.43 16 21 O -0.57 -23.47 11.70 -3.02 -0.04 -23.51 16 22 C -0.05 -0.95 4.60 29.10 0.13 -0.81 16 23 C -0.01 -0.30 5.81 24.83 0.14 -0.16 16 24 C -0.22 -5.44 10.81 22.19 0.24 -5.20 16 25 C -0.23 -5.23 10.91 22.19 0.24 -4.98 16 26 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 27 O -0.19 -5.07 10.65 -2.58 -0.03 -5.09 16 28 C 0.15 6.35 5.86 86.29 0.51 6.85 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.05 2.86 6.03 -2.39 -0.01 2.84 16 32 H 0.03 1.61 7.46 -2.39 -0.02 1.59 16 33 H 0.07 3.32 6.11 -2.39 -0.01 3.30 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 0.83 5.96 -2.39 -0.01 0.82 16 40 H 0.14 1.67 7.73 -2.39 -0.02 1.65 16 41 H 0.15 1.77 7.92 -2.39 -0.02 1.75 16 42 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.24 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 Total: -1.00 -82.17 356.95 4.25 -77.93 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.96 Total: 13.56 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.53 Total: -0.20 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.21 Total: -112.06 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.06 Total: -28.60 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -82.17 4.25 -77.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.546 kcal (2) G-P(sol) polarization free energy of solvation -82.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds