Wall clock time and date at job start Tue Mar 31 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99420 * 2 1 4 4 H 1.48503 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47197 * 300.00003 * 3 2 1 6 6 H 1.48502 * 109.47058 * 60.00402 * 3 2 1 7 7 C 1.38805 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 189.91869 * 7 2 1 9 9 N 1.36941 * 119.99890 * 9.92747 * 7 2 1 10 10 C 1.46858 * 120.46409 * 211.36187 * 9 7 2 11 11 C 1.53320 * 109.10371 * 232.65770 * 10 9 7 12 12 C 1.52892 * 108.93508 * 305.89695 * 11 10 9 13 13 H 1.08995 * 109.52679 * 302.22501 * 12 11 10 14 14 C 1.53278 * 109.16148 * 62.14072 * 12 11 10 15 15 H 1.08998 * 109.47946 * 56.43026 * 14 12 11 16 16 C 1.52821 * 109.17653 * 176.26064 * 14 12 11 17 17 C 1.53144 * 109.27163 * 298.22504 * 16 14 12 18 18 C 1.53127 * 109.63116 * 60.83208 * 17 16 14 19 19 N 1.46711 * 110.29994 * 181.39343 * 12 11 10 20 20 C 1.34770 * 120.83984 * 6.06684 * 19 12 11 21 21 O 1.21281 * 120.00591 * 5.14745 * 20 19 12 22 22 C 1.50703 * 119.99747 * 185.14922 * 20 19 12 23 23 C 1.50702 * 109.47141 * 180.02562 * 22 20 19 24 24 C 1.34517 * 125.79370 * 89.71619 * 23 22 20 25 25 C 1.41373 * 106.84343 * 179.88948 * 24 23 22 26 26 C 1.34516 * 106.84030 * 0.37276 * 25 24 23 27 27 O 1.34302 * 125.78746 * 270.02181 * 23 22 20 28 28 C 1.47066 * 120.46265 * 31.38190 * 9 7 2 29 29 H 0.97001 * 120.00388 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.53247 * 352.53903 * 10 9 7 31 31 H 1.08999 * 109.53485 * 112.76660 * 10 9 7 32 32 H 1.09002 * 109.56233 * 65.73224 * 11 10 9 33 33 H 1.08993 * 109.56037 * 185.95302 * 11 10 9 34 34 H 1.09000 * 109.50526 * 58.13355 * 16 14 12 35 35 H 1.08999 * 109.50456 * 178.25713 * 16 14 12 36 36 H 1.09003 * 109.43569 * 300.78994 * 17 16 14 37 37 H 1.09002 * 109.44869 * 180.88786 * 17 16 14 38 38 H 1.08999 * 109.54913 * 186.12591 * 18 17 16 39 39 H 1.09008 * 109.53858 * 65.86112 * 18 17 16 40 40 H 1.09001 * 109.46906 * 299.99866 * 22 20 19 41 41 H 1.08996 * 109.47459 * 59.99617 * 22 20 19 42 42 H 1.08000 * 126.57469 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.58437 * 180.11912 * 25 24 23 44 44 H 1.08004 * 125.79321 * 179.75492 * 26 25 24 45 45 H 1.08989 * 109.69526 * 6.95937 * 28 9 7 46 46 H 1.09004 * 109.72173 * 246.40048 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0782 -1.2089 0.1616 9 7 1.3411 -2.3792 -0.2034 10 6 1.8079 -3.6202 0.4281 11 6 1.9669 -4.7014 -0.6473 12 6 0.6529 -4.8318 -1.4178 13 1 -0.1534 -5.0724 -0.7250 14 6 0.3467 -3.5036 -2.1189 15 1 1.1830 -3.2313 -2.7628 16 6 -0.9167 -3.6615 -2.9640 17 6 -0.6766 -4.7266 -4.0379 18 6 -0.3582 -6.0675 -3.3705 19 7 0.7614 -5.8837 -2.4348 20 6 1.8590 -6.6621 -2.5092 21 8 2.7320 -6.5612 -1.6733 22 6 2.0018 -7.6581 -3.6312 23 6 3.3076 -8.3960 -3.4848 24 6 3.4942 -9.5356 -2.7949 25 6 4.8605 -9.8743 -2.9252 26 6 5.4290 -8.9171 -3.6801 27 8 4.4836 -8.0243 -4.0162 28 6 0.1450 -2.4185 -1.0582 29 1 -0.4851 0.8400 0.0004 30 1 2.7685 -3.4438 0.9122 31 1 1.0796 -3.9481 1.1697 32 1 2.7657 -4.4193 -1.3332 33 1 2.2108 -5.6529 -0.1748 34 1 -1.7452 -3.9690 -2.3259 35 1 -1.1569 -2.7112 -3.4406 36 1 0.1619 -4.4258 -4.6660 37 1 -1.5709 -4.8304 -4.6524 38 1 -0.0814 -6.7971 -4.1315 39 1 -1.2341 -6.4209 -2.8262 40 1 1.1766 -8.3693 -3.5928 41 1 1.9854 -7.1339 -4.5867 42 1 2.7436 -10.0873 -2.2483 43 1 5.3542 -10.7342 -2.4972 44 1 6.4693 -8.8736 -3.9671 45 1 0.0080 -1.4520 -1.5429 46 1 -0.7313 -2.6538 -0.4541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021694966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:08 Heat of formation + Delta-G solvation = 15.473736 kcal Electronic energy + Delta-G solvation = -27884.090817 eV Core-core repulsion = 24162.416177 eV Total energy + Delta-G solvation = -3721.674640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.59522 -40.41212 -37.71878 -35.82742 -33.35714 -32.86095 -32.76738 -31.84154 -30.18319 -29.14528 -27.22744 -25.53858 -24.59887 -22.54506 -22.38579 -21.79511 -20.86511 -20.14716 -19.37149 -18.90231 -17.39416 -16.79467 -16.66138 -15.84749 -15.57845 -15.44748 -14.84154 -14.38509 -14.27445 -14.01876 -13.63876 -13.56953 -13.33324 -12.96183 -12.86707 -12.75334 -12.61045 -12.35027 -12.19809 -12.05783 -11.80498 -11.46426 -10.96646 -10.94010 -10.83779 -10.76080 -10.64466 -10.20196 -10.00151 -9.98195 -9.93366 -9.76927 -9.42086 -8.85115 -8.48021 -8.40372 -8.23492 -6.53553 -5.73861 -3.21046 1.66583 2.55349 2.73521 2.88842 3.26539 3.39281 3.46695 3.49703 4.45763 4.52783 4.58292 4.84124 4.87890 4.96147 5.02703 5.13117 5.14071 5.17493 5.37686 5.44760 5.49563 5.57166 5.69185 5.74565 5.75841 5.85228 5.93251 5.98190 6.03641 6.15923 6.27584 6.35684 6.43127 6.45140 6.48003 6.60259 6.69320 6.84482 7.00174 7.08672 7.09439 7.23056 7.39937 7.63690 7.71716 7.84550 8.37939 8.53571 9.27763 9.89455 10.47148 11.33886 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.502808 B = 7733.431379 C = 8671.413959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.122 4.122 12 C 0.158 3.842 13 H 0.065 0.935 14 C -0.121 4.121 15 H 0.065 0.935 16 C -0.112 4.112 17 C -0.134 4.134 18 C 0.106 3.894 19 N -0.607 5.607 20 C 0.513 3.487 21 O -0.517 6.517 22 C -0.065 4.065 23 C 0.011 3.989 24 C -0.199 4.199 25 C -0.214 4.214 26 C -0.040 4.040 27 O -0.172 6.172 28 C 0.183 3.817 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.201 0.799 45 H 0.092 0.908 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -18.526 -10.845 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.161 4.161 12 C 0.057 3.943 13 H 0.083 0.917 14 C -0.142 4.142 15 H 0.084 0.916 16 C -0.150 4.150 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.340 5.340 20 C 0.299 3.701 21 O -0.393 6.393 22 C -0.105 4.105 23 C -0.039 4.039 24 C -0.219 4.219 25 C -0.233 4.233 26 C -0.108 4.108 27 O -0.067 6.067 28 C 0.057 3.943 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.217 0.783 45 H 0.110 0.890 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.488 -18.056 -10.536 20.911 hybrid contribution 0.343 0.705 0.029 0.785 sum 0.832 -17.351 -10.507 20.302 Atomic orbital electron populations 1.69968 1.05187 1.25208 1.54882 1.25146 0.95432 0.98283 1.00709 0.86202 0.79365 0.83914 0.77214 1.20262 1.21642 1.21667 1.19266 0.90830 0.83937 1.43710 0.91843 1.44092 1.31015 1.03922 1.52677 1.21133 0.97599 0.86954 0.93045 1.22531 0.94827 0.99961 0.98775 1.21326 0.99340 0.85563 0.88081 0.91722 1.22296 0.96881 0.96265 0.98796 0.91648 1.21482 0.98402 0.98321 0.96803 1.21923 1.01659 0.95160 0.98474 1.21756 0.89644 0.97991 0.92273 1.48300 1.17099 1.34759 1.33889 1.20259 0.81987 0.81553 0.86258 1.90778 1.40864 1.67791 1.39905 1.20229 0.91821 0.98090 1.00328 1.21537 0.86128 0.96043 1.00234 1.21480 0.97368 0.98700 1.04313 1.21773 0.94775 1.02279 1.04516 1.23974 0.94113 0.90202 1.02490 1.83999 1.16833 1.45625 1.60283 1.20781 0.88127 0.96279 0.89130 0.93749 0.92726 0.96806 0.92079 0.89872 0.92089 0.91544 0.91721 0.91130 0.90373 0.91271 0.86365 0.87388 0.83732 0.83598 0.78250 0.89028 0.96384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.35 11.00 55.49 0.61 -25.74 16 2 C 0.00 0.06 5.06 -17.43 -0.09 -0.02 16 3 Si 0.90 22.08 29.57 -169.99 -5.03 17.06 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -7.00 9.57 -15.06 -0.14 -7.14 16 8 H 0.06 1.79 7.85 -52.49 -0.41 1.38 16 9 N -0.59 -15.40 2.99 -172.26 -0.52 -15.92 16 10 C 0.14 3.18 6.50 -3.68 -0.02 3.15 16 11 C -0.12 -2.47 3.82 -26.62 -0.10 -2.57 16 12 C 0.16 2.82 2.64 -67.73 -0.18 2.64 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -2.28 2.21 -90.53 -0.20 -2.48 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.11 -1.65 5.24 -26.75 -0.14 -1.79 16 17 C -0.13 -1.48 6.06 -26.59 -0.16 -1.64 16 18 C 0.11 1.09 6.35 -3.67 -0.02 1.06 16 19 N -0.61 -8.68 2.97 -165.32 -0.49 -9.17 16 20 C 0.51 7.65 7.58 -10.99 -0.08 7.56 16 21 O -0.52 -9.82 11.71 5.56 0.07 -9.75 16 22 C -0.06 -0.69 4.60 -29.03 -0.13 -0.83 16 23 C 0.01 0.14 5.81 -35.62 -0.21 -0.06 16 24 C -0.20 -2.40 10.81 -39.71 -0.43 -2.83 16 25 C -0.21 -2.36 10.91 -39.71 -0.43 -2.80 16 26 C -0.04 -0.44 12.09 29.42 0.36 -0.09 16 27 O -0.17 -2.36 10.65 5.71 0.06 -2.30 16 28 C 0.18 4.34 4.58 -3.69 -0.02 4.32 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 1.25 7.93 -51.93 -0.41 0.84 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 1.38 7.47 -51.93 -0.39 0.99 16 33 H 0.08 1.70 6.11 -51.93 -0.32 1.38 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.56 5.96 -51.93 -0.31 0.25 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.12 0.87 7.74 -51.93 -0.40 0.47 16 41 H 0.11 0.97 7.91 -51.93 -0.41 0.56 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.09 2.43 6.09 -51.94 -0.32 2.12 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -33.57 356.85 -9.10 -42.68 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.18 Total: 1.28 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.01 Total: -3.51 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.40 Total: -50.83 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.13 Total: -12.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.57 -9.10 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.150 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds