Wall clock time and date at job start Tue Mar 31 2020 12:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99420 * 2 1 4 4 H 1.48503 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47197 * 300.00003 * 3 2 1 6 6 H 1.48502 * 109.47058 * 60.00402 * 3 2 1 7 7 C 1.38805 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 189.91869 * 7 2 1 9 9 N 1.36941 * 119.99890 * 9.92747 * 7 2 1 10 10 C 1.46858 * 120.46409 * 211.36187 * 9 7 2 11 11 C 1.53320 * 109.10371 * 232.65770 * 10 9 7 12 12 C 1.52892 * 108.93508 * 305.89695 * 11 10 9 13 13 H 1.08995 * 109.52679 * 302.22501 * 12 11 10 14 14 C 1.53278 * 109.16148 * 62.14072 * 12 11 10 15 15 H 1.08998 * 109.47946 * 56.43026 * 14 12 11 16 16 C 1.52821 * 109.17653 * 176.26064 * 14 12 11 17 17 C 1.53144 * 109.27163 * 298.22504 * 16 14 12 18 18 C 1.53127 * 109.63116 * 60.83208 * 17 16 14 19 19 N 1.46711 * 110.29994 * 181.39343 * 12 11 10 20 20 C 1.34770 * 120.83984 * 6.06684 * 19 12 11 21 21 O 1.21281 * 120.00591 * 5.14745 * 20 19 12 22 22 C 1.50703 * 119.99747 * 185.14922 * 20 19 12 23 23 C 1.50702 * 109.47141 * 180.02562 * 22 20 19 24 24 C 1.34517 * 125.79370 * 89.71619 * 23 22 20 25 25 C 1.41373 * 106.84343 * 179.88948 * 24 23 22 26 26 C 1.34516 * 106.84030 * 0.37276 * 25 24 23 27 27 O 1.34302 * 125.78746 * 270.02181 * 23 22 20 28 28 C 1.47066 * 120.46265 * 31.38190 * 9 7 2 29 29 H 0.97001 * 120.00388 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.53247 * 352.53903 * 10 9 7 31 31 H 1.08999 * 109.53485 * 112.76660 * 10 9 7 32 32 H 1.09002 * 109.56233 * 65.73224 * 11 10 9 33 33 H 1.08993 * 109.56037 * 185.95302 * 11 10 9 34 34 H 1.09000 * 109.50526 * 58.13355 * 16 14 12 35 35 H 1.08999 * 109.50456 * 178.25713 * 16 14 12 36 36 H 1.09003 * 109.43569 * 300.78994 * 17 16 14 37 37 H 1.09002 * 109.44869 * 180.88786 * 17 16 14 38 38 H 1.08999 * 109.54913 * 186.12591 * 18 17 16 39 39 H 1.09008 * 109.53858 * 65.86112 * 18 17 16 40 40 H 1.09001 * 109.46906 * 299.99866 * 22 20 19 41 41 H 1.08996 * 109.47459 * 59.99617 * 22 20 19 42 42 H 1.08000 * 126.57469 * 0.02562 * 24 23 22 43 43 H 1.07997 * 126.58437 * 180.11912 * 25 24 23 44 44 H 1.08004 * 125.79321 * 179.75492 * 26 25 24 45 45 H 1.08989 * 109.69526 * 6.95937 * 28 9 7 46 46 H 1.09004 * 109.72173 * 246.40048 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0782 -1.2089 0.1616 9 7 1.3411 -2.3792 -0.2034 10 6 1.8079 -3.6202 0.4281 11 6 1.9669 -4.7014 -0.6473 12 6 0.6529 -4.8318 -1.4178 13 1 -0.1534 -5.0724 -0.7250 14 6 0.3467 -3.5036 -2.1189 15 1 1.1830 -3.2313 -2.7628 16 6 -0.9167 -3.6615 -2.9640 17 6 -0.6766 -4.7266 -4.0379 18 6 -0.3582 -6.0675 -3.3705 19 7 0.7614 -5.8837 -2.4348 20 6 1.8590 -6.6621 -2.5092 21 8 2.7320 -6.5612 -1.6733 22 6 2.0018 -7.6581 -3.6312 23 6 3.3076 -8.3960 -3.4848 24 6 3.4942 -9.5356 -2.7949 25 6 4.8605 -9.8743 -2.9252 26 6 5.4290 -8.9171 -3.6801 27 8 4.4836 -8.0243 -4.0162 28 6 0.1450 -2.4185 -1.0582 29 1 -0.4851 0.8400 0.0004 30 1 2.7685 -3.4438 0.9122 31 1 1.0796 -3.9481 1.1697 32 1 2.7657 -4.4193 -1.3332 33 1 2.2108 -5.6529 -0.1748 34 1 -1.7452 -3.9690 -2.3259 35 1 -1.1569 -2.7112 -3.4406 36 1 0.1619 -4.4258 -4.6660 37 1 -1.5709 -4.8304 -4.6524 38 1 -0.0814 -6.7971 -4.1315 39 1 -1.2341 -6.4209 -2.8262 40 1 1.1766 -8.3693 -3.5928 41 1 1.9854 -7.1339 -4.5867 42 1 2.7436 -10.0873 -2.2483 43 1 5.3542 -10.7342 -2.4972 44 1 6.4693 -8.8736 -3.9671 45 1 0.0080 -1.4520 -1.5429 46 1 -0.7313 -2.6538 -0.4541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021694966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:07 Heat of formation + Delta-G solvation = -4.978539 kcal Electronic energy + Delta-G solvation = -27884.977694 eV Core-core repulsion = 24162.416177 eV Total energy + Delta-G solvation = -3722.561517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.45765 -41.66912 -39.15450 -37.34419 -34.75966 -34.12977 -33.99322 -33.02155 -31.77043 -30.77152 -28.26684 -27.18954 -25.99874 -24.17556 -23.85483 -22.65111 -21.96019 -21.38778 -21.04362 -20.00667 -18.73837 -18.25040 -17.86546 -17.06493 -16.80534 -16.60010 -16.51739 -15.68637 -15.50601 -15.34292 -15.19804 -14.96999 -14.61957 -14.44583 -13.97512 -13.74331 -13.70286 -13.61379 -13.52412 -13.36251 -13.14460 -12.82274 -12.71498 -12.66968 -12.53067 -12.13257 -12.06400 -12.01950 -11.71203 -11.62878 -11.47136 -11.03548 -10.79913 -10.61532 -10.16283 -9.49855 -9.34140 -8.62195 -7.89137 -5.41234 0.78815 1.42663 1.43562 1.55004 1.63202 1.70665 2.02208 2.27738 2.47275 3.24437 3.54296 3.61682 3.70939 3.88357 3.97189 4.05271 4.15479 4.17463 4.18644 4.30240 4.35101 4.38789 4.46298 4.50832 4.60876 4.72612 4.78633 4.87133 4.92299 4.95352 4.96813 5.01188 5.04297 5.14336 5.19675 5.25109 5.33763 5.38763 5.44336 5.52280 5.61685 5.65569 5.69771 5.77401 6.24311 6.38551 6.53428 7.13297 7.24884 7.81625 8.34276 9.15477 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.502808 B = 7733.431379 C = 8671.413959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.044 4.044 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.269 4.269 8 H 0.055 0.945 9 N -0.614 5.614 10 C 0.137 3.863 11 C -0.100 4.100 12 C 0.166 3.834 13 H 0.066 0.934 14 C -0.107 4.107 15 H 0.040 0.960 16 C -0.110 4.110 17 C -0.126 4.126 18 C 0.100 3.900 19 N -0.605 5.605 20 C 0.505 3.495 21 O -0.568 6.568 22 C -0.053 4.053 23 C -0.015 4.015 24 C -0.209 4.209 25 C -0.228 4.228 26 C -0.048 4.048 27 O -0.197 6.197 28 C 0.192 3.808 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.015 0.985 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.161 0.839 41 H 0.131 0.869 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.231 0.769 45 H 0.058 0.942 46 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -20.562 -12.856 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.400 4.400 8 H 0.073 0.927 9 N -0.338 5.338 10 C 0.011 3.989 11 C -0.139 4.139 12 C 0.063 3.937 13 H 0.084 0.916 14 C -0.128 4.128 15 H 0.058 0.942 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.021 4.021 19 N -0.338 5.338 20 C 0.295 3.705 21 O -0.448 6.448 22 C -0.092 4.092 23 C -0.065 4.065 24 C -0.229 4.229 25 C -0.247 4.247 26 C -0.115 4.115 27 O -0.094 6.094 28 C 0.066 3.934 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.178 0.822 41 H 0.148 0.852 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.248 0.752 45 H 0.076 0.924 46 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -0.362 -20.128 -12.582 23.739 hybrid contribution 0.638 1.311 0.713 1.623 sum 0.277 -18.817 -11.868 22.248 Atomic orbital electron populations 1.70121 1.06385 1.25847 1.55358 1.25872 0.96316 1.01275 1.00502 0.85186 0.78291 0.79691 0.77157 1.19727 1.21105 1.21350 1.19490 0.90842 0.85405 1.44230 0.92740 1.44362 1.31428 1.04185 1.53783 1.21221 0.96839 0.86886 0.93960 1.22234 0.95571 0.98474 0.97588 1.20939 0.97473 0.86426 0.88872 0.91567 1.22006 0.98321 0.95130 0.97360 0.94168 1.21470 0.96038 0.99807 0.97463 1.21901 1.03226 0.94012 0.97281 1.22167 0.88855 0.98491 0.92579 1.48307 1.18468 1.33371 1.33645 1.21066 0.81007 0.81761 0.86699 1.90745 1.42479 1.69417 1.42117 1.20307 0.92280 0.97716 0.98897 1.21999 0.86681 0.96758 1.01043 1.21850 0.98252 0.98800 1.03948 1.22162 0.94765 1.03111 1.04630 1.24711 0.95109 0.89630 1.02066 1.83984 1.17688 1.46692 1.61019 1.20590 0.86795 0.96437 0.89569 0.93861 0.93848 0.96711 0.94858 0.89736 0.91299 0.92359 0.92291 0.87366 0.86017 0.89304 0.82190 0.85152 0.82290 0.81490 0.75235 0.92358 0.98091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 11.00 21.65 0.24 -55.53 16 2 C -0.04 -2.55 5.06 84.86 0.43 -2.12 16 3 Si 0.97 46.45 29.57 68.60 2.03 48.48 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.27 -15.89 9.57 84.03 0.80 -15.09 16 8 H 0.05 3.23 7.85 -2.91 -0.02 3.21 16 9 N -0.61 -33.40 2.99 -698.90 -2.09 -35.49 16 10 C 0.14 6.57 6.50 86.42 0.56 7.13 16 11 C -0.10 -4.19 3.82 30.67 0.12 -4.08 16 12 C 0.17 5.88 2.64 45.01 0.12 6.00 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.11 -4.10 2.21 -10.74 -0.02 -4.12 16 15 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 16 C -0.11 -3.08 5.24 30.58 0.16 -2.92 16 17 C -0.13 -2.31 6.06 30.69 0.19 -2.13 16 18 C 0.10 1.57 6.35 86.31 0.55 2.12 16 19 N -0.61 -15.97 2.97 -795.35 -2.36 -18.33 16 20 C 0.51 14.16 7.58 87.66 0.66 14.83 16 21 O -0.57 -21.59 11.71 -3.03 -0.04 -21.63 16 22 C -0.05 -0.95 4.60 29.10 0.13 -0.81 16 23 C -0.01 -0.35 5.81 24.83 0.14 -0.21 16 24 C -0.21 -4.66 10.81 22.19 0.24 -4.42 16 25 C -0.23 -4.66 10.91 22.19 0.24 -4.42 16 26 C -0.05 -1.00 12.09 66.97 0.81 -0.19 16 27 O -0.20 -5.21 10.65 -2.48 -0.03 -5.23 16 28 C 0.19 9.51 4.58 86.30 0.39 9.91 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.04 2.11 7.93 -2.39 -0.02 2.09 16 31 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.03 1.56 7.47 -2.39 -0.02 1.55 16 33 H 0.08 3.56 6.11 -2.39 -0.01 3.54 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 0.94 5.96 -2.39 -0.01 0.93 16 39 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.16 1.47 7.74 -2.39 -0.02 1.45 16 41 H 0.13 1.78 7.91 -2.39 -0.02 1.76 16 42 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 43 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.06 3.26 6.09 -2.39 -0.01 3.24 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -78.54 356.85 4.24 -74.30 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.96 Total: 13.95 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.53 Total: -0.50 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.22 Total: -109.36 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -78.54 4.24 -74.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021694966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.318 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds