Wall clock time and date at job start Tue Mar 31 2020 12:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99769 * 2 1 4 4 C 1.38748 * 120.05518 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94539 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.97488 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46922 * 89.99941 * 6 5 4 8 8 O 1.21285 * 120.00072 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00129 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00274 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85079 * 336.19777 * 10 9 7 12 12 C 1.53779 * 113.61190 * 107.50667 * 10 9 7 13 13 C 1.53782 * 87.08376 * 139.98158 * 12 10 9 14 14 H 1.09007 * 113.69034 * 89.11986 * 13 12 10 15 15 N 1.46496 * 113.61660 * 220.02143 * 13 12 10 16 16 C 1.36945 * 119.99718 * 252.49423 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53784 * 113.61463 * 205.00198 * 10 9 7 25 25 C 1.38294 * 120.05511 * 0.26889 * 5 4 3 26 26 C 1.38249 * 120.10883 * 359.45660 * 25 5 4 27 27 C 1.38164 * 120.05215 * 0.54871 * 26 25 5 28 28 C 1.50703 * 120.02713 * 179.70905 * 27 26 25 29 29 H 1.09006 * 109.47115 * 299.99641 * 1 2 3 30 30 H 1.08994 * 109.47687 * 60.00083 * 1 2 3 31 31 H 1.09008 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.02904 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.47033 * 329.99454 * 6 5 4 34 34 H 1.09003 * 109.46833 * 209.99971 * 6 5 4 35 35 H 0.96995 * 119.99414 * 0.02562 * 9 7 6 36 36 H 1.08995 * 113.61453 * 25.43277 * 12 10 9 37 37 H 1.09003 * 113.61291 * 254.52998 * 12 10 9 38 38 H 0.96996 * 120.00499 * 72.49153 * 15 13 12 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.61528 * 105.47154 * 24 10 9 41 41 H 1.08996 * 113.61354 * 334.57143 * 24 10 9 42 42 H 1.08002 * 119.94520 * 179.70581 * 25 5 4 43 43 H 1.07998 * 119.97284 * 180.24503 * 26 25 5 44 44 H 1.09008 * 109.46501 * 270.02067 * 28 27 26 45 45 H 1.08997 * 109.47183 * 30.01454 * 28 27 26 46 46 H 1.08995 * 109.47243 * 150.02005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 1.1017 4.8699 -0.0022 7 6 0.8281 5.2924 1.4182 8 8 1.2564 4.6316 2.3406 9 7 0.1084 6.4052 1.6635 10 6 -0.1581 6.8157 3.0443 11 1 -0.1052 5.9867 3.7500 12 6 0.6415 8.0535 3.4841 13 6 -0.6314 8.5206 4.2098 14 1 -0.7084 8.1593 5.2353 15 7 -0.8786 9.9599 4.0935 16 6 -0.6879 10.7770 5.1758 17 1 -0.3558 10.3602 6.1151 18 6 -0.9216 12.1407 5.0655 19 7 -1.3269 12.6486 3.9208 20 14 -0.6623 13.2552 6.5421 21 1 -0.9774 14.6567 6.1658 22 1 -1.5550 12.8266 7.6486 23 1 0.7523 13.1683 6.9854 24 6 -1.4236 7.6758 3.1980 25 6 3.3018 3.6759 -0.0067 26 6 4.0559 2.5172 -0.0004 27 6 3.4310 1.2849 0.0000 28 6 4.2537 0.0223 0.0002 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3203 -0.0005 33 1 0.1574 4.6909 -0.5164 34 1 1.6516 5.6582 -0.5164 35 1 -0.2338 6.9338 0.9257 36 1 0.9348 8.7002 2.6572 37 1 1.4679 7.8232 4.1565 38 1 -1.1772 10.3341 3.2499 39 1 -1.4906 13.6016 3.8439 40 1 -2.2643 7.1407 3.6394 41 1 -1.6947 8.2192 2.2929 42 1 3.7920 4.6382 -0.0119 43 1 5.1343 2.5753 -0.0008 44 1 4.4521 -0.2822 -1.0276 45 1 5.1977 0.2037 0.5140 46 1 3.7063 -0.7679 0.5140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022394319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:01 Heat of formation + Delta-G solvation = -25.428997 kcal Electronic energy + Delta-G solvation = -25523.419889 eV Core-core repulsion = 21799.971574 eV Total energy + Delta-G solvation = -3723.448315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62682 -39.76716 -38.19660 -37.44494 -34.08930 -33.92412 -32.70746 -30.36493 -30.20445 -29.49082 -27.82629 -25.71681 -25.13563 -24.30902 -22.45129 -22.36150 -21.22336 -20.35820 -19.28767 -17.75976 -17.20599 -16.92662 -16.68038 -16.07326 -15.99121 -15.69732 -15.11807 -14.65337 -14.58026 -14.31095 -14.00790 -13.88590 -13.65224 -13.14756 -13.01786 -12.94222 -12.68318 -12.32750 -12.23717 -12.16596 -11.93439 -11.85026 -11.47731 -11.28883 -11.23706 -11.07113 -10.92236 -10.64257 -10.52028 -10.33727 -10.08930 -9.77171 -9.59682 -8.92410 -8.88533 -8.74757 -8.24344 -7.00428 -5.81862 -3.10796 1.10394 1.29352 2.68499 3.04111 3.22402 3.42164 3.46644 3.47561 3.66984 4.35592 4.56815 4.56919 4.73351 4.80021 4.87113 4.88892 4.90300 5.03621 5.08363 5.19177 5.21518 5.23793 5.33799 5.36590 5.40261 5.45733 5.46246 5.47950 5.66120 5.85000 5.93259 5.99226 6.10526 6.11999 6.23287 6.28769 6.29355 6.41399 6.50476 6.59943 6.60436 6.74362 7.05048 7.17312 7.63171 7.66837 8.31279 8.36729 9.47970 10.04471 10.39072 11.40412 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.001992 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.294021 B =14054.255851 C =14389.187282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.125 3.875 4 C -0.189 4.189 5 C -0.028 4.028 6 C -0.106 4.106 7 C 0.512 3.488 8 O -0.536 6.536 9 N -0.716 5.716 10 C 0.118 3.882 11 H 0.108 0.892 12 C -0.176 4.176 13 C 0.169 3.831 14 H 0.079 0.921 15 N -0.710 5.710 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.291 1.291 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.159 4.159 25 C -0.137 4.137 26 C -0.082 4.082 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.399 0.601 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -24.105 -13.417 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.080 3.920 4 C -0.207 4.207 5 C -0.029 4.029 6 C -0.146 4.146 7 C 0.298 3.702 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.013 3.987 11 H 0.126 0.874 12 C -0.218 4.218 13 C 0.056 3.944 14 H 0.097 0.903 15 N -0.348 5.348 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.199 4.199 25 C -0.155 4.155 26 C -0.100 4.100 27 C -0.121 4.121 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.720 -24.649 -12.559 28.249 hybrid contribution -0.441 1.354 0.101 1.428 sum 5.279 -23.295 -12.458 26.939 Atomic orbital electron populations 1.23052 0.78501 1.03815 1.01471 1.86038 1.21230 1.26860 1.88864 1.18729 0.91744 0.84019 0.97516 1.20990 0.99739 0.91754 1.08252 1.19023 0.93536 0.92906 0.97418 1.20728 1.01633 0.96763 0.95498 1.20449 0.78230 0.80668 0.90881 1.90723 1.50593 1.53747 1.46129 1.46069 1.54670 1.26598 1.09253 1.22481 0.97573 0.96180 0.82471 0.87420 1.24324 1.00209 0.95967 1.01304 1.21352 0.91904 0.85337 0.95828 0.90260 1.42346 1.79286 1.00487 1.12677 1.19273 1.38092 0.88995 0.91233 0.91040 1.24769 1.02031 0.96936 0.97160 1.69649 1.52305 1.12287 1.23891 0.86243 0.77942 0.79889 0.81973 1.21682 1.21189 1.21196 1.23864 0.96403 0.98095 1.01496 1.20895 0.93023 0.98585 1.03026 1.20820 0.99718 0.90953 0.98536 1.19237 0.90595 0.96214 1.06063 1.20586 0.98739 0.94611 1.02034 0.92552 0.92728 0.88307 0.85693 0.88093 0.87694 0.76652 0.90220 0.92303 0.78102 0.93403 0.91576 0.89977 0.85927 0.85378 0.91588 0.91736 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.30 9.54 -19.45 -0.19 -3.49 16 3 C 0.12 1.43 6.66 -39.22 -0.26 1.17 16 4 C -0.19 -2.09 8.69 -39.44 -0.34 -2.43 16 5 C -0.03 -0.31 4.37 -104.64 -0.46 -0.77 16 6 C -0.11 -0.99 5.83 -29.03 -0.17 -1.16 16 7 C 0.51 6.72 7.82 -10.99 -0.09 6.63 16 8 O -0.54 -9.33 15.63 5.55 0.09 -9.25 16 9 N -0.72 -8.82 5.35 -53.02 -0.28 -9.10 16 10 C 0.12 1.75 4.24 -67.12 -0.28 1.46 16 11 H 0.11 1.71 7.47 -51.93 -0.39 1.32 16 12 C -0.18 -3.07 7.68 -25.92 -0.20 -3.27 16 13 C 0.17 3.26 4.48 -67.12 -0.30 2.96 16 14 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 15 N -0.71 -17.40 5.40 -52.64 -0.28 -17.68 16 16 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.16 -2.45 7.58 -25.92 -0.20 -2.65 16 25 C -0.14 -1.50 9.70 -39.56 -0.38 -1.88 16 26 C -0.08 -0.84 9.70 -39.60 -0.38 -1.23 16 27 C -0.12 -1.30 5.89 -104.47 -0.62 -1.92 16 28 C -0.10 -0.87 9.79 36.01 0.35 -0.52 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 33 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.40 3.89 8.73 -40.82 -0.36 3.54 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.38 9.91 7.92 -40.82 -0.32 9.58 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 46 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -33.85 384.26 -8.95 -42.80 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.19 Total: 10.53 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.58 Total: -9.77 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.16 Total: -53.81 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.10 Total: -12.73 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.85 -8.95 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022394319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.368 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds