Wall clock time and date at job start Tue Mar 31 2020 12:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99769 * 2 1 4 4 C 1.38748 * 120.05518 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94539 * 180.02562 * 4 3 2 6 6 C 1.50707 * 119.97488 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46922 * 89.99941 * 6 5 4 8 8 O 1.21285 * 120.00072 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00129 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00274 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85079 * 336.19777 * 10 9 7 12 12 C 1.53779 * 113.61190 * 107.50667 * 10 9 7 13 13 C 1.53782 * 87.08376 * 139.98158 * 12 10 9 14 14 H 1.09007 * 113.69034 * 89.11986 * 13 12 10 15 15 N 1.46496 * 113.61660 * 220.02143 * 13 12 10 16 16 C 1.36945 * 119.99718 * 252.49423 * 15 13 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53784 * 113.61463 * 205.00198 * 10 9 7 25 25 C 1.38294 * 120.05511 * 0.26889 * 5 4 3 26 26 C 1.38249 * 120.10883 * 359.45660 * 25 5 4 27 27 C 1.38164 * 120.05215 * 0.54871 * 26 25 5 28 28 C 1.50703 * 120.02713 * 179.70905 * 27 26 25 29 29 H 1.09006 * 109.47115 * 299.99641 * 1 2 3 30 30 H 1.08994 * 109.47687 * 60.00083 * 1 2 3 31 31 H 1.09008 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.02904 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.47033 * 329.99454 * 6 5 4 34 34 H 1.09003 * 109.46833 * 209.99971 * 6 5 4 35 35 H 0.96995 * 119.99414 * 0.02562 * 9 7 6 36 36 H 1.08995 * 113.61453 * 25.43277 * 12 10 9 37 37 H 1.09003 * 113.61291 * 254.52998 * 12 10 9 38 38 H 0.96996 * 120.00499 * 72.49153 * 15 13 12 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.61528 * 105.47154 * 24 10 9 41 41 H 1.08996 * 113.61354 * 334.57143 * 24 10 9 42 42 H 1.08002 * 119.94520 * 179.70581 * 25 5 4 43 43 H 1.07998 * 119.97284 * 180.24503 * 26 25 5 44 44 H 1.09008 * 109.46501 * 270.02067 * 28 27 26 45 45 H 1.08997 * 109.47183 * 30.01454 * 28 27 26 46 46 H 1.08995 * 109.47243 * 150.02005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 1.1017 4.8699 -0.0022 7 6 0.8281 5.2924 1.4182 8 8 1.2564 4.6316 2.3406 9 7 0.1084 6.4052 1.6635 10 6 -0.1581 6.8157 3.0443 11 1 -0.1052 5.9867 3.7500 12 6 0.6415 8.0535 3.4841 13 6 -0.6314 8.5206 4.2098 14 1 -0.7084 8.1593 5.2353 15 7 -0.8786 9.9599 4.0935 16 6 -0.6879 10.7770 5.1758 17 1 -0.3558 10.3602 6.1151 18 6 -0.9216 12.1407 5.0655 19 7 -1.3269 12.6486 3.9208 20 14 -0.6623 13.2552 6.5421 21 1 -0.9774 14.6567 6.1658 22 1 -1.5550 12.8266 7.6486 23 1 0.7523 13.1683 6.9854 24 6 -1.4236 7.6758 3.1980 25 6 3.3018 3.6759 -0.0067 26 6 4.0559 2.5172 -0.0004 27 6 3.4310 1.2849 0.0000 28 6 4.2537 0.0223 0.0002 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3203 -0.0005 33 1 0.1574 4.6909 -0.5164 34 1 1.6516 5.6582 -0.5164 35 1 -0.2338 6.9338 0.9257 36 1 0.9348 8.7002 2.6572 37 1 1.4679 7.8232 4.1565 38 1 -1.1772 10.3341 3.2499 39 1 -1.4906 13.6016 3.8439 40 1 -2.2643 7.1407 3.6394 41 1 -1.6947 8.2192 2.2929 42 1 3.7920 4.6382 -0.0119 43 1 5.1343 2.5753 -0.0008 44 1 4.4521 -0.2822 -1.0276 45 1 5.1977 0.2037 0.5140 46 1 3.7063 -0.7679 0.5140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022394319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:01 Heat of formation + Delta-G solvation = -47.282448 kcal Electronic energy + Delta-G solvation = -25524.367526 eV Core-core repulsion = 21799.971574 eV Total energy + Delta-G solvation = -3724.395952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45636 -40.83421 -39.40863 -38.30842 -35.76449 -34.72302 -34.18524 -31.89963 -31.09212 -30.50045 -28.41903 -26.77844 -26.51499 -25.93348 -23.76772 -23.18693 -22.13973 -21.41423 -20.70818 -19.17515 -18.48822 -18.00154 -17.55767 -17.26974 -16.67797 -16.48722 -16.29028 -16.19791 -15.93877 -15.31990 -15.07536 -14.91758 -14.72791 -14.46522 -14.27729 -13.84898 -13.67818 -13.34909 -13.29293 -13.15416 -12.92597 -12.85882 -12.79328 -12.63044 -12.27743 -12.20390 -12.18157 -12.05693 -11.95427 -11.77257 -11.73819 -11.50081 -10.89434 -10.80615 -9.95324 -9.66303 -9.01612 -8.98443 -7.95401 -5.23363 0.31977 0.50598 1.47998 1.50218 1.56279 1.67061 2.24392 2.39710 2.57035 2.84119 3.36021 3.59868 3.70259 3.83816 3.87149 3.96684 3.98949 4.06555 4.21744 4.28133 4.30548 4.32232 4.34476 4.36391 4.57102 4.64606 4.68627 4.72042 4.74474 4.78129 4.84206 4.89152 4.90946 4.97347 5.15262 5.16086 5.29784 5.36322 5.40319 5.51128 5.53530 5.63434 5.69976 5.87782 6.27022 6.45125 6.64154 7.31866 7.33692 8.09336 8.33027 9.27276 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.001992 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.294021 B =14054.255851 C =14389.187282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.108 3.892 4 C -0.200 4.200 5 C -0.044 4.044 6 C -0.097 4.097 7 C 0.512 3.488 8 O -0.582 6.582 9 N -0.706 5.706 10 C 0.137 3.863 11 H 0.101 0.899 12 C -0.169 4.169 13 C 0.148 3.852 14 H 0.076 0.924 15 N -0.723 5.723 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.295 1.295 22 H -0.278 1.278 23 H -0.280 1.280 24 C -0.138 4.138 25 C -0.153 4.153 26 C -0.089 4.089 27 C -0.138 4.138 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.376 0.624 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.148 0.852 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -25.015 -14.167 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.063 3.937 4 C -0.218 4.218 5 C -0.044 4.044 6 C -0.136 4.136 7 C 0.300 3.700 8 O -0.461 6.461 9 N -0.357 5.357 10 C 0.031 3.969 11 H 0.119 0.881 12 C -0.212 4.212 13 C 0.038 3.962 14 H 0.094 0.906 15 N -0.361 5.361 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.221 1.221 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.178 4.178 25 C -0.171 4.171 26 C -0.107 4.107 27 C -0.138 4.138 28 C -0.156 4.156 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.150 0.850 43 H 0.166 0.834 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.668 -25.602 -13.327 29.414 hybrid contribution -0.404 1.518 0.336 1.606 sum 5.263 -24.084 -12.991 27.866 Atomic orbital electron populations 1.23286 0.76943 1.05433 1.01805 1.86017 1.22931 1.26653 1.88834 1.18997 0.92321 0.84522 0.97857 1.21214 1.00487 0.91821 1.08299 1.19287 0.93952 0.93607 0.97583 1.20760 1.03241 0.96643 0.93006 1.21089 0.76988 0.79877 0.92015 1.90711 1.52376 1.55145 1.47914 1.45921 1.54462 1.26717 1.08597 1.22069 0.96072 0.94853 0.83920 0.88089 1.24155 0.99156 0.97159 1.00689 1.21672 0.94224 0.83274 0.97039 0.90623 1.42478 1.79690 1.02322 1.11569 1.19650 1.36503 0.89634 0.92068 0.90767 1.25538 1.02982 0.98427 0.99736 1.69791 1.54164 1.12085 1.25701 0.85246 0.77967 0.77677 0.79079 1.22126 1.20393 1.20668 1.23658 0.96698 0.97019 1.00418 1.21175 0.93388 0.99302 1.03205 1.21118 1.00857 0.90710 0.98029 1.19616 0.90966 0.97272 1.05988 1.20595 0.98819 0.93481 1.02744 0.92968 0.91566 0.86147 0.84530 0.85139 0.85258 0.74787 0.90863 0.93205 0.79131 0.93989 0.90105 0.89171 0.84965 0.83429 0.90582 0.90516 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -6.71 9.54 -92.52 -0.88 -7.59 16 3 C 0.11 2.41 6.66 22.50 0.15 2.56 16 4 C -0.20 -4.21 8.69 22.36 0.19 -4.02 16 5 C -0.04 -0.91 4.37 -19.88 -0.09 -1.00 16 6 C -0.10 -1.55 5.83 29.10 0.17 -1.38 16 7 C 0.51 12.44 7.82 87.66 0.69 13.12 16 8 O -0.58 -19.78 15.63 -3.04 -0.05 -19.83 16 9 N -0.71 -15.76 5.35 -440.04 -2.36 -18.12 16 10 C 0.14 3.85 4.24 45.52 0.19 4.04 16 11 H 0.10 3.08 7.47 -2.39 -0.02 3.06 16 12 C -0.17 -5.80 7.68 31.12 0.24 -5.56 16 13 C 0.15 5.66 4.48 45.52 0.20 5.86 16 14 H 0.08 2.92 8.10 -2.38 -0.02 2.90 16 15 N -0.72 -35.43 5.40 -320.44 -1.73 -37.16 16 16 C -0.25 -13.56 9.97 84.03 0.84 -12.72 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 19 N -0.97 -58.08 13.06 21.65 0.28 -57.79 16 20 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 C -0.14 -4.03 7.58 31.12 0.24 -3.79 16 25 C -0.15 -3.15 9.70 22.29 0.22 -2.94 16 26 C -0.09 -1.75 9.70 22.25 0.22 -1.54 16 27 C -0.14 -2.89 5.89 -19.77 -0.12 -3.01 16 28 C -0.10 -1.61 9.79 71.24 0.70 -0.91 16 29 H 0.05 0.70 7.66 -2.38 -0.02 0.69 16 30 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 31 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.14 2.38 6.30 -2.91 -0.02 2.36 16 33 H 0.13 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 35 H 0.42 6.82 8.73 -92.71 -0.81 6.01 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.38 19.47 7.92 -92.71 -0.73 18.73 16 39 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.09 2.52 8.09 -2.39 -0.02 2.50 16 42 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 46 H 0.06 1.07 7.53 -2.39 -0.02 1.05 16 Total: -1.00 -73.43 384.26 2.16 -71.27 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.55 Total: 35.06 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.41 Total: -13.68 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -3.80 Total: -113.07 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.93 Total: -27.42 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.43 2.16 -71.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022394319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds