Wall clock time and date at job start Tue Mar 31 2020 12:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99411 * 2 1 4 4 H 1.48498 * 109.46782 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47190 * 300.00123 * 3 2 1 6 6 H 1.48497 * 109.47178 * 60.00218 * 3 2 1 7 7 C 1.38812 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99546 * 165.33641 * 7 2 1 9 9 N 1.36933 * 119.99650 * 345.33665 * 7 2 1 10 10 C 1.46922 * 120.63656 * 328.36143 * 9 7 2 11 11 C 1.53193 * 108.77526 * 233.59186 * 10 9 7 12 12 C 1.53046 * 109.30787 * 305.36059 * 11 10 9 13 13 C 1.53031 * 109.53908 * 61.36825 * 12 11 10 14 14 C 1.46931 * 120.62525 * 148.33866 * 9 7 2 15 15 H 1.08997 * 109.70065 * 246.26912 * 14 9 7 16 16 C 1.52999 * 109.58693 * 6.62749 * 14 9 7 17 17 N 1.46506 * 109.46881 * 299.19965 * 16 14 9 18 18 C 1.34782 * 119.99522 * 180.02562 * 17 16 14 19 19 O 1.21612 * 120.00208 * 359.72942 * 18 17 16 20 20 C 1.47378 * 119.99403 * 179.97438 * 18 17 16 21 21 C 1.47024 * 127.19611 * 359.68740 * 20 18 17 22 22 C 1.34172 * 105.95355 * 179.86762 * 21 20 18 23 23 O 1.34218 * 109.12922 * 0.39685 * 22 21 20 24 24 C 1.33658 * 110.90541 * 359.73459 * 23 22 21 25 25 C 1.50693 * 125.80139 * 179.97438 * 24 23 22 26 26 C 1.52996 * 117.49950 * 8.78696 * 25 24 23 27 27 C 1.53004 * 117.49844 * 300.12426 * 25 24 23 28 28 H 0.96996 * 120.00911 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58722 * 113.79780 * 10 9 7 30 30 H 1.09003 * 109.69835 * 353.44279 * 10 9 7 31 31 H 1.09001 * 109.49643 * 185.41116 * 11 10 9 32 32 H 1.08992 * 109.50070 * 65.31028 * 11 10 9 33 33 H 1.09004 * 109.46021 * 301.34318 * 12 11 10 34 34 H 1.09000 * 109.44466 * 181.38490 * 12 11 10 35 35 H 1.09004 * 109.50095 * 178.67851 * 13 12 11 36 36 H 1.09000 * 109.52496 * 58.59963 * 13 12 11 37 37 H 1.09001 * 109.47075 * 179.20090 * 16 14 9 38 38 H 1.08994 * 109.47587 * 59.20123 * 16 14 9 39 39 H 0.96998 * 119.99776 * 0.02562 * 17 16 14 40 40 H 1.07998 * 127.02064 * 0.02562 * 21 20 18 41 41 H 1.07998 * 125.43884 * 180.10221 * 22 21 20 42 42 H 1.09005 * 115.55343 * 154.46179 * 25 24 23 43 43 H 1.08997 * 117.49858 * 0.02562 * 26 25 24 44 44 H 1.09000 * 117.49712 * 145.02647 * 26 25 24 45 45 H 1.08997 * 117.49660 * 214.98058 * 27 25 24 46 46 H 1.09001 * 117.49716 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0639 -1.2171 -0.2373 9 7 1.3591 -2.3688 0.2991 10 6 0.2315 -2.3762 1.2410 11 6 0.5081 -3.4144 2.3331 12 6 0.7924 -4.7700 1.6822 13 6 2.0337 -4.6611 0.7939 14 6 1.7745 -3.6370 -0.3156 15 1 0.9857 -4.0024 -0.9731 16 6 3.0559 -3.4202 -1.1230 17 7 2.8046 -2.4422 -2.1844 18 6 3.7965 -2.0927 -3.0274 19 8 4.9014 -2.5856 -2.9038 20 6 3.5435 -1.1093 -4.0955 21 6 2.2780 -0.4204 -4.3878 22 6 2.5261 0.3765 -5.4383 23 8 3.8073 0.2286 -5.8097 24 6 4.4332 -0.6523 -5.0232 25 6 5.8762 -1.0702 -5.1416 26 6 6.7595 -0.2910 -6.1180 27 6 6.3187 -1.7176 -6.4554 28 1 -0.4851 0.8399 0.0004 29 1 -0.6848 -2.6377 0.7119 30 1 0.1239 -1.3902 1.6930 31 1 -0.3623 -3.4985 2.9838 32 1 1.3728 -3.1039 2.9195 33 1 -0.0630 -5.0683 1.0760 34 1 0.9653 -5.5159 2.4581 35 1 2.2493 -5.6326 0.3492 36 1 2.8844 -4.3392 1.3946 37 1 3.3701 -4.3650 -1.5665 38 1 3.8414 -3.0486 -0.4651 39 1 1.9243 -2.0462 -2.2805 40 1 1.3409 -0.5311 -3.8625 41 1 1.8080 1.0291 -5.9127 42 1 6.3383 -1.4305 -4.2224 43 1 6.2971 0.5242 -6.6744 44 1 7.8028 -0.1390 -5.8413 45 1 7.0721 -2.5033 -6.4005 46 1 5.5662 -1.8408 -7.2342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024620281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:51 Heat of formation + Delta-G solvation = 4.668028 kcal Electronic energy + Delta-G solvation = -27752.405503 eV Core-core repulsion = 24030.262293 eV Total energy + Delta-G solvation = -3722.143210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57710 -40.56577 -39.22888 -38.02915 -35.67397 -34.89778 -33.96035 -32.21191 -31.67178 -30.68012 -27.82892 -26.71701 -24.52343 -23.84898 -23.73890 -23.30294 -22.34722 -21.46476 -20.83793 -20.50467 -18.98924 -18.16812 -17.40531 -17.23641 -17.00849 -16.70059 -16.28742 -16.06655 -15.70357 -15.51146 -15.24613 -14.85832 -14.69771 -14.53857 -14.09263 -13.96766 -13.62424 -13.51643 -13.40718 -13.08387 -12.86774 -12.81978 -12.58025 -12.46212 -12.32373 -12.05369 -11.91946 -11.80858 -11.53463 -11.47539 -11.16120 -11.08851 -10.83180 -10.80717 -10.52986 -9.86954 -9.40652 -8.55543 -7.84387 -5.30539 0.30422 1.11579 1.35980 1.42236 1.49243 1.75824 2.31696 2.46984 2.52253 2.91169 3.30965 3.38238 3.57603 3.73970 3.86942 3.94007 4.01007 4.03177 4.21911 4.25952 4.27770 4.42842 4.53545 4.55591 4.64374 4.69754 4.69957 4.84178 4.84641 4.87375 4.99864 5.04209 5.10027 5.14158 5.18167 5.22025 5.28226 5.34379 5.38624 5.46218 5.62350 5.64187 5.75810 5.83292 6.01447 6.44133 6.73184 7.19802 7.33584 7.87876 8.41413 9.20062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.004604 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.632150 B = 6079.986014 C = 7259.807597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 0.930 3.070 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.140 3.860 17 N -0.687 5.687 18 C 0.577 3.423 19 O -0.588 6.588 20 C -0.260 4.260 21 C -0.201 4.201 22 C -0.028 4.028 23 O -0.174 6.174 24 C 0.096 3.904 25 C -0.116 4.116 26 C -0.152 4.152 27 C -0.146 4.146 28 H 0.249 0.751 29 H 0.002 0.998 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.410 0.590 40 H 0.155 0.845 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -4.436 -9.816 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.222 4.222 3 Si 0.761 3.239 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.073 0.927 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.336 5.336 18 C 0.366 3.634 19 O -0.472 6.472 20 C -0.265 4.265 21 C -0.220 4.220 22 C -0.093 4.093 23 O -0.070 6.070 24 C 0.043 3.957 25 C -0.134 4.134 26 C -0.189 4.189 27 C -0.183 4.183 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.173 0.827 41 H 0.267 0.733 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.935 -4.511 -9.947 12.430 hybrid contribution -0.600 1.446 0.634 1.689 sum 5.335 -3.065 -9.313 11.162 Atomic orbital electron populations 1.70102 1.05727 1.25255 1.55593 1.25378 0.95521 0.99605 1.01684 0.85776 0.78319 0.82777 0.77044 1.21336 1.21391 1.21928 1.19142 0.91539 0.85036 1.40618 0.92705 1.44249 1.37179 1.02687 1.48372 1.20558 0.88076 0.96911 0.89074 1.22055 1.00508 0.96630 0.98273 1.21343 0.97434 0.96462 0.98722 1.21888 0.98361 0.98588 0.97244 1.20889 0.93097 0.87673 0.92956 0.95036 1.21279 0.97663 0.91122 0.88301 1.45820 1.14199 1.43435 1.30139 1.17465 0.84037 0.80807 0.81074 1.90635 1.24079 1.57543 1.74940 1.21270 0.96034 1.06756 1.02416 1.23068 0.98274 1.00329 1.00356 1.24553 0.83077 1.03008 0.98626 1.83696 1.23550 1.50212 1.49564 1.21904 0.94118 0.90007 0.89686 1.20735 0.85934 1.08543 0.98196 1.23187 1.00365 0.95269 1.00070 1.23158 1.03294 0.97055 0.94755 0.94184 0.97974 0.93452 0.91637 0.93616 0.92383 0.90644 0.89926 0.92804 0.90790 0.93721 0.75328 0.82721 0.73297 0.85301 0.87669 0.85959 0.86148 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.78 11.32 21.65 0.25 -50.53 16 2 C -0.03 -1.33 4.95 84.86 0.42 -0.91 16 3 Si 0.93 45.01 29.58 68.60 2.03 47.04 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 7 C -0.23 -11.96 6.98 84.03 0.59 -11.37 16 8 H 0.06 2.98 5.90 -2.91 -0.02 2.97 16 9 N -0.60 -27.73 2.97 -675.23 -2.00 -29.73 16 10 C 0.18 8.12 5.26 86.36 0.45 8.58 16 11 C -0.14 -4.82 6.08 30.67 0.19 -4.63 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.81 5.37 30.67 0.16 -3.64 16 14 C 0.16 6.12 3.00 44.97 0.14 6.26 16 15 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 16 C 0.14 5.45 4.43 86.38 0.38 5.84 16 17 N -0.69 -28.32 3.88 -466.40 -1.81 -30.13 16 18 C 0.58 24.22 7.81 86.65 0.68 24.90 16 19 O -0.59 -26.37 14.92 -4.07 -0.06 -26.43 16 20 C -0.26 -9.80 6.31 -18.99 -0.12 -9.92 16 21 C -0.20 -6.68 10.60 23.65 0.25 -6.42 16 22 C -0.03 -0.73 12.03 66.89 0.80 0.08 16 23 O -0.17 -4.98 10.23 4.39 0.04 -4.94 16 24 C 0.10 3.16 6.85 25.26 0.17 3.33 16 25 C -0.12 -3.30 5.62 -11.54 -0.06 -3.36 16 26 C -0.15 -3.04 10.17 30.62 0.31 -2.73 16 27 C -0.15 -3.02 10.24 30.62 0.31 -2.71 16 28 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 29 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.05 2.46 6.27 -2.39 -0.01 2.45 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.93 7.38 -2.39 -0.02 1.91 16 39 H 0.41 17.66 6.61 -92.71 -0.61 17.05 16 40 H 0.16 5.25 7.74 -2.91 -0.02 5.23 16 41 H 0.25 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.13 4.25 6.65 -2.38 -0.02 4.23 16 43 H 0.10 2.00 7.96 -2.39 -0.02 1.98 16 44 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -64.58 368.39 3.67 -60.91 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.37 Total: 33.41 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.85 Total: 0.41 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.57 Total: -110.39 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.02 Total: -31.37 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.58 3.67 -60.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024620281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.576 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds