Wall clock time and date at job start Tue Mar 31 2020 12:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48501 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47124 * 299.99621 * 3 2 1 6 6 H 1.48497 * 109.47384 * 59.99641 * 3 2 1 7 7 C 1.38808 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99985 * 190.06811 * 7 2 1 9 9 N 1.36936 * 120.00244 * 10.34245 * 7 2 1 10 10 C 1.46928 * 120.63146 * 32.50790 * 9 7 2 11 11 C 1.53183 * 108.77552 * 126.36968 * 10 9 7 12 12 C 1.53042 * 109.31639 * 54.63307 * 11 10 9 13 13 C 1.53035 * 109.53873 * 298.63666 * 12 11 10 14 14 C 1.46929 * 120.63140 * 212.22673 * 9 7 2 15 15 H 1.08994 * 109.58456 * 113.84062 * 14 9 7 16 16 C 1.53001 * 109.58652 * 353.42030 * 14 9 7 17 17 N 1.46498 * 109.47268 * 60.10441 * 16 14 9 18 18 C 1.34776 * 120.00142 * 179.97438 * 17 16 14 19 19 O 1.21621 * 119.99757 * 0.02562 * 18 17 16 20 20 C 1.47383 * 120.00201 * 180.02562 * 18 17 16 21 21 C 1.47015 * 127.18999 * 359.68744 * 20 18 17 22 22 C 1.34178 * 105.95360 * 179.82872 * 21 20 18 23 23 O 1.34219 * 109.12272 * 0.43924 * 22 21 20 24 24 C 1.33655 * 110.90834 * 359.70721 * 23 22 21 25 25 C 1.50697 * 125.80345 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49745 * 8.61932 * 25 24 23 27 27 C 1.52999 * 60.00240 * 252.51170 * 26 25 24 28 28 H 0.97004 * 120.00402 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58538 * 246.15684 * 10 9 7 30 30 H 1.08998 * 109.58576 * 6.43749 * 10 9 7 31 31 H 1.09006 * 109.49884 * 174.58665 * 11 10 9 32 32 H 1.09004 * 109.50085 * 294.68252 * 11 10 9 33 33 H 1.09005 * 109.45648 * 58.65845 * 12 11 10 34 34 H 1.09001 * 109.46568 * 178.62267 * 12 11 10 35 35 H 1.09004 * 109.49514 * 181.31315 * 13 12 11 36 36 H 1.08998 * 109.49873 * 301.37639 * 13 12 11 37 37 H 1.08999 * 109.47606 * 180.10731 * 16 14 9 38 38 H 1.09008 * 109.46932 * 300.10723 * 16 14 9 39 39 H 0.96995 * 120.00088 * 0.02562 * 17 16 14 40 40 H 1.07994 * 127.02344 * 0.02562 * 21 20 18 41 41 H 1.08001 * 125.44111 * 180.14987 * 22 21 20 42 42 H 1.08996 * 115.55659 * 154.32692 * 25 24 23 43 43 H 1.09004 * 117.49776 * 0.02562 * 26 25 24 44 44 H 1.09002 * 117.49891 * 145.01655 * 26 25 24 45 45 H 1.08992 * 117.50008 * 252.51047 * 27 26 25 46 46 H 1.09000 * 117.49774 * 107.48712 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0777 -1.2093 0.1641 9 7 1.3422 -2.3785 -0.2118 10 6 0.1668 -2.4236 -1.0923 11 6 0.3845 -3.5100 -2.1500 12 6 0.7007 -4.8366 -1.4554 13 6 1.9870 -4.6929 -0.6389 14 6 1.7909 -3.6209 0.4316 15 1 1.0383 -3.9549 1.1457 16 6 3.1157 -3.3738 1.1561 17 7 2.9287 -2.3394 2.1765 18 6 3.9672 -1.9554 2.9450 19 8 5.0596 -2.4674 2.7910 20 6 3.7790 -0.9152 3.9720 21 6 2.5386 -0.1915 4.2870 22 6 2.8456 0.6484 5.2873 23 8 4.1442 0.5082 5.5963 24 6 4.7207 -0.4185 4.8248 25 6 6.1653 -0.8431 4.8870 26 6 7.0087 -0.3108 6.0473 27 6 7.2280 0.2278 4.6322 28 1 -0.4851 0.8400 -0.0004 29 1 -0.7209 -2.6580 -0.5049 30 1 0.0379 -1.4570 -1.5794 31 1 -0.5189 -3.6199 -2.7500 32 1 1.2177 -3.2291 -2.7942 33 1 -0.1222 -5.1046 -0.7927 34 1 0.8320 -5.6169 -2.2051 35 1 2.2242 -5.6446 -0.1633 36 1 2.8053 -4.4013 -1.2973 37 1 3.4478 -4.2969 1.6311 38 1 3.8665 -3.0442 0.4379 39 1 2.0574 -1.9314 2.2996 40 1 1.5762 -0.3136 3.8126 41 1 2.1587 1.3319 5.7643 42 1 6.3741 -1.8532 4.5347 43 1 6.5186 0.3461 6.7659 44 1 7.7725 -0.9709 6.4587 45 1 8.1359 -0.0779 4.1124 46 1 6.8822 1.2393 4.4195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024620282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:54 Heat of formation + Delta-G solvation = 20.160670 kcal Electronic energy + Delta-G solvation = -27806.799167 eV Core-core repulsion = 24085.327768 eV Total energy + Delta-G solvation = -3721.471399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34790 -38.97774 -37.63774 -37.02002 -34.09333 -33.06980 -32.65069 -30.60985 -29.90962 -29.47785 -26.19412 -24.98862 -23.19095 -22.62434 -22.35143 -22.10807 -20.84144 -20.04935 -19.37913 -18.99707 -17.64279 -16.43867 -16.08983 -15.73168 -15.55848 -15.22909 -15.10969 -14.38707 -14.20995 -13.98918 -13.58317 -13.41165 -13.33189 -12.87979 -12.61953 -12.39687 -12.35389 -12.06494 -11.91027 -11.71917 -11.61558 -11.19414 -10.94664 -10.88306 -10.78495 -10.54735 -10.45328 -10.26969 -10.12870 -9.98685 -9.56152 -9.49787 -9.45316 -9.25726 -8.58896 -8.33565 -8.07048 -6.63863 -5.84578 -3.33140 1.60319 2.36519 2.94549 3.31338 3.40745 3.46157 3.75568 3.90428 4.07039 4.43151 4.46516 4.79782 4.94630 5.03490 5.21994 5.27697 5.32487 5.43787 5.52368 5.55846 5.64187 5.68920 5.69922 5.78378 5.97271 6.00885 6.03850 6.09348 6.16602 6.17289 6.20735 6.35635 6.37086 6.42687 6.57975 6.60369 6.71547 6.73857 6.86513 6.99426 7.22298 7.26614 7.39056 7.67116 7.79700 8.34582 8.41926 8.93243 9.16826 9.77008 10.35508 11.21966 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.004643 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.838184 B = 6028.499445 C = 7094.206714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.011 3.989 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.136 3.864 17 N -0.684 5.684 18 C 0.581 3.419 19 O -0.566 6.566 20 C -0.221 4.221 21 C -0.174 4.174 22 C -0.050 4.050 23 O -0.180 6.180 24 C 0.089 3.911 25 C -0.078 4.078 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.253 0.747 29 H 0.018 0.982 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.415 0.585 40 H 0.162 0.838 41 H 0.206 0.794 42 H 0.152 0.848 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -2.801 8.202 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.334 5.334 18 C 0.369 3.631 19 O -0.449 6.449 20 C -0.225 4.225 21 C -0.193 4.193 22 C -0.116 4.116 23 O -0.077 6.077 24 C 0.037 3.963 25 C -0.096 4.096 26 C -0.211 4.211 27 C -0.199 4.199 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.180 0.820 41 H 0.223 0.777 42 H 0.169 0.831 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.026 -2.854 8.298 10.645 hybrid contribution -0.459 1.217 -0.291 1.333 sum 5.566 -1.637 8.007 9.888 Atomic orbital electron populations 1.69990 1.05077 1.25283 1.54191 1.25072 0.95196 0.97948 1.00621 0.86398 0.79818 0.84490 0.77375 1.20195 1.21647 1.21469 1.19239 0.91191 0.83496 1.43717 0.91289 1.44071 1.32910 1.03193 1.51107 1.20776 0.88066 0.96941 0.89452 1.22203 0.99811 0.96830 0.99539 1.21360 0.97394 0.97393 0.98337 1.21865 0.98065 0.98129 0.98650 1.20647 0.93016 0.88628 0.92376 0.95114 1.21292 0.98231 0.89518 0.89794 1.45801 1.13221 1.39897 1.34484 1.17138 0.84335 0.81177 0.80464 1.90670 1.25296 1.57693 1.71211 1.21220 0.94002 1.04410 1.02860 1.23048 0.99263 0.98110 0.98891 1.23777 0.82421 1.04094 1.01276 1.83657 1.23212 1.48733 1.52050 1.21573 0.93843 0.89706 0.91223 1.20748 0.83036 1.00892 1.04914 1.23048 1.02547 1.03902 0.91631 1.23033 0.99656 0.98420 0.98790 0.93702 0.96429 0.89570 0.93572 0.92875 0.92896 0.93743 0.93009 0.92108 0.92636 0.91578 0.74705 0.82023 0.77749 0.83091 0.88307 0.87970 0.87695 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 11.12 55.49 0.62 -23.55 16 2 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16 3 Si 0.89 21.34 29.57 -169.99 -5.03 16.31 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.17 6.91 -15.06 -0.10 -6.27 16 8 H 0.07 1.81 5.92 -52.49 -0.31 1.50 16 9 N -0.59 -13.43 2.98 -165.03 -0.49 -13.92 16 10 C 0.17 3.89 5.25 -3.71 -0.02 3.87 16 11 C -0.14 -2.68 6.08 -26.62 -0.16 -2.84 16 12 C -0.11 -1.76 5.89 -26.69 -0.16 -1.91 16 13 C -0.13 -2.14 5.34 -26.84 -0.14 -2.29 16 14 C 0.16 3.11 3.00 -67.82 -0.20 2.91 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.61 4.42 -4.04 -0.02 2.60 16 17 N -0.68 -13.67 3.86 -61.39 -0.24 -13.91 16 18 C 0.58 11.80 7.81 -12.54 -0.10 11.70 16 19 O -0.57 -12.30 14.92 5.26 0.08 -12.22 16 20 C -0.22 -4.07 6.31 -103.28 -0.65 -4.72 16 21 C -0.17 -2.88 10.60 -37.46 -0.40 -3.28 16 22 C -0.05 -0.71 12.03 29.30 0.35 -0.35 16 23 O -0.18 -2.73 10.23 7.64 0.08 -2.65 16 24 C 0.09 1.48 6.85 -34.97 -0.24 1.24 16 25 C -0.08 -1.13 5.62 -91.77 -0.52 -1.65 16 26 C -0.17 -1.92 10.17 -26.73 -0.27 -2.19 16 27 C -0.16 -1.98 10.23 -26.73 -0.27 -2.25 16 28 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.19 6.18 -51.93 -0.32 1.87 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.39 7.42 -51.92 -0.39 1.01 16 39 H 0.41 8.59 6.55 -40.82 -0.27 8.33 16 40 H 0.16 2.66 7.74 -52.49 -0.41 2.25 16 41 H 0.21 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.15 2.35 6.66 -51.93 -0.35 2.00 16 43 H 0.10 1.06 7.96 -51.93 -0.41 0.65 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -28.87 368.06 -9.50 -38.38 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.08 Total: 11.27 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.99 Total: -5.26 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.11 Total: -51.37 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.16 Total: -14.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.87 -9.50 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024620282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.537 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds