Wall clock time and date at job start Tue Mar 31 2020 12:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99938 * 2 1 4 4 H 1.48501 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47124 * 299.99621 * 3 2 1 6 6 H 1.48497 * 109.47384 * 59.99641 * 3 2 1 7 7 C 1.38808 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99985 * 190.06811 * 7 2 1 9 9 N 1.36936 * 120.00244 * 10.34245 * 7 2 1 10 10 C 1.46928 * 120.63146 * 32.50790 * 9 7 2 11 11 C 1.53183 * 108.77552 * 126.36968 * 10 9 7 12 12 C 1.53042 * 109.31639 * 54.63307 * 11 10 9 13 13 C 1.53035 * 109.53873 * 298.63666 * 12 11 10 14 14 C 1.46929 * 120.63140 * 212.22673 * 9 7 2 15 15 H 1.08994 * 109.58456 * 113.84062 * 14 9 7 16 16 C 1.53001 * 109.58652 * 353.42030 * 14 9 7 17 17 N 1.46498 * 109.47268 * 60.10441 * 16 14 9 18 18 C 1.34776 * 120.00142 * 179.97438 * 17 16 14 19 19 O 1.21621 * 119.99757 * 0.02562 * 18 17 16 20 20 C 1.47383 * 120.00201 * 180.02562 * 18 17 16 21 21 C 1.47015 * 127.18999 * 359.68744 * 20 18 17 22 22 C 1.34178 * 105.95360 * 179.82872 * 21 20 18 23 23 O 1.34219 * 109.12272 * 0.43924 * 22 21 20 24 24 C 1.33655 * 110.90834 * 359.70721 * 23 22 21 25 25 C 1.50697 * 125.80345 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49745 * 8.61932 * 25 24 23 27 27 C 1.52999 * 60.00240 * 252.51170 * 26 25 24 28 28 H 0.97004 * 120.00402 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58538 * 246.15684 * 10 9 7 30 30 H 1.08998 * 109.58576 * 6.43749 * 10 9 7 31 31 H 1.09006 * 109.49884 * 174.58665 * 11 10 9 32 32 H 1.09004 * 109.50085 * 294.68252 * 11 10 9 33 33 H 1.09005 * 109.45648 * 58.65845 * 12 11 10 34 34 H 1.09001 * 109.46568 * 178.62267 * 12 11 10 35 35 H 1.09004 * 109.49514 * 181.31315 * 13 12 11 36 36 H 1.08998 * 109.49873 * 301.37639 * 13 12 11 37 37 H 1.08999 * 109.47606 * 180.10731 * 16 14 9 38 38 H 1.09008 * 109.46932 * 300.10723 * 16 14 9 39 39 H 0.96995 * 120.00088 * 0.02562 * 17 16 14 40 40 H 1.07994 * 127.02344 * 0.02562 * 21 20 18 41 41 H 1.08001 * 125.44111 * 180.14987 * 22 21 20 42 42 H 1.08996 * 115.55659 * 154.32692 * 25 24 23 43 43 H 1.09004 * 117.49776 * 0.02562 * 26 25 24 44 44 H 1.09002 * 117.49891 * 145.01655 * 26 25 24 45 45 H 1.08992 * 117.50008 * 252.51047 * 27 26 25 46 46 H 1.09000 * 117.49774 * 107.48712 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0777 -1.2093 0.1641 9 7 1.3422 -2.3785 -0.2118 10 6 0.1668 -2.4236 -1.0923 11 6 0.3845 -3.5100 -2.1500 12 6 0.7007 -4.8366 -1.4554 13 6 1.9870 -4.6929 -0.6389 14 6 1.7909 -3.6209 0.4316 15 1 1.0383 -3.9549 1.1457 16 6 3.1157 -3.3738 1.1561 17 7 2.9287 -2.3394 2.1765 18 6 3.9672 -1.9554 2.9450 19 8 5.0596 -2.4674 2.7910 20 6 3.7790 -0.9152 3.9720 21 6 2.5386 -0.1915 4.2870 22 6 2.8456 0.6484 5.2873 23 8 4.1442 0.5082 5.5963 24 6 4.7207 -0.4185 4.8248 25 6 6.1653 -0.8431 4.8870 26 6 7.0087 -0.3108 6.0473 27 6 7.2280 0.2278 4.6322 28 1 -0.4851 0.8400 -0.0004 29 1 -0.7209 -2.6580 -0.5049 30 1 0.0379 -1.4570 -1.5794 31 1 -0.5189 -3.6199 -2.7500 32 1 1.2177 -3.2291 -2.7942 33 1 -0.1222 -5.1046 -0.7927 34 1 0.8320 -5.6169 -2.2051 35 1 2.2242 -5.6446 -0.1633 36 1 2.8053 -4.4013 -1.2973 37 1 3.4478 -4.2969 1.6311 38 1 3.8665 -3.0442 0.4379 39 1 2.0574 -1.9314 2.2996 40 1 1.5762 -0.3136 3.8126 41 1 2.1587 1.3319 5.7643 42 1 6.3741 -1.8532 4.5347 43 1 6.5186 0.3461 6.7659 44 1 7.7725 -0.9709 6.4587 45 1 8.1359 -0.0779 4.1124 46 1 6.8822 1.2393 4.4195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024620282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:54 Heat of formation + Delta-G solvation = 4.942362 kcal Electronic energy + Delta-G solvation = -27807.459083 eV Core-core repulsion = 24085.327768 eV Total energy + Delta-G solvation = -3722.131314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.58325 -40.57329 -39.23821 -38.04180 -35.67311 -34.91072 -33.96586 -32.21166 -31.66965 -30.68876 -27.83317 -26.72199 -24.52909 -23.84870 -23.73270 -23.31310 -22.35755 -21.46648 -20.83614 -20.50658 -18.99686 -18.16622 -17.44298 -17.19703 -17.03583 -16.71077 -16.28022 -16.06226 -15.70074 -15.52103 -15.23623 -14.85594 -14.69582 -14.55514 -14.08273 -13.96925 -13.62570 -13.49741 -13.44336 -13.07624 -12.87138 -12.82124 -12.57814 -12.47572 -12.33543 -12.04348 -11.92323 -11.79781 -11.52927 -11.48700 -11.16632 -11.09633 -10.83957 -10.81674 -10.52573 -9.86610 -9.41246 -8.53455 -7.83666 -5.32338 0.29763 1.10876 1.35715 1.41796 1.49063 1.75438 2.33163 2.45850 2.50701 2.89572 3.31952 3.39165 3.57982 3.73570 3.86609 3.93313 4.00519 4.01436 4.22079 4.25567 4.27743 4.42812 4.53176 4.55578 4.64742 4.68887 4.70036 4.83825 4.84104 4.87622 5.00071 5.03598 5.08938 5.14494 5.17193 5.22119 5.28597 5.33738 5.38983 5.46642 5.63954 5.64999 5.75349 5.85581 6.00871 6.45439 6.73309 7.20392 7.33537 7.87910 8.41369 9.20528 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014423 B = 0.004643 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.838184 B = 6028.499445 C = 7094.206714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 0.932 3.068 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.055 0.945 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.140 3.860 17 N -0.687 5.687 18 C 0.577 3.423 19 O -0.588 6.588 20 C -0.260 4.260 21 C -0.202 4.202 22 C -0.028 4.028 23 O -0.174 6.174 24 C 0.096 3.904 25 C -0.112 4.112 26 C -0.143 4.143 27 C -0.160 4.160 28 H 0.249 0.751 29 H 0.001 0.999 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.410 0.590 40 H 0.155 0.845 41 H 0.251 0.749 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -3.366 9.299 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.222 4.222 3 Si 0.762 3.238 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.073 0.927 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.336 5.336 18 C 0.366 3.634 19 O -0.472 6.472 20 C -0.264 4.264 21 C -0.221 4.221 22 C -0.093 4.093 23 O -0.070 6.070 24 C 0.042 3.958 25 C -0.130 4.130 26 C -0.179 4.179 27 C -0.197 4.197 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.173 0.827 41 H 0.267 0.733 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.136 0.864 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.713 -3.438 9.395 12.048 hybrid contribution -0.638 1.374 -0.597 1.628 sum 6.075 -2.064 8.798 10.889 Atomic orbital electron populations 1.70083 1.05713 1.25193 1.55888 1.25423 0.95604 0.99563 1.01618 0.85747 0.78214 0.82705 0.77109 1.21387 1.22068 1.21100 1.19151 0.90544 0.84507 1.41977 0.92747 1.44241 1.32777 1.03754 1.51819 1.20596 0.87426 0.96723 0.89998 1.22061 1.00425 0.96672 0.98352 1.21343 0.97083 0.96647 0.98889 1.21820 0.98235 0.98327 0.97755 1.20800 0.92695 0.87935 0.93152 0.95027 1.21284 0.97654 0.90032 0.89390 1.45830 1.12964 1.40109 1.34656 1.17466 0.83929 0.81344 0.80678 1.90637 1.25887 1.58639 1.72042 1.21271 0.95820 1.05495 1.03862 1.23071 0.98679 0.99675 1.00679 1.24559 0.82121 1.02910 0.99661 1.83695 1.23702 1.48121 1.51491 1.21914 0.94522 0.89043 0.90286 1.20753 0.82611 1.00887 1.08763 1.23175 1.01179 1.02913 0.90678 1.23144 0.98975 0.97373 1.00212 0.94172 0.98047 0.93042 0.91694 0.93698 0.92387 0.90678 0.89883 0.92856 0.90759 0.93738 0.75293 0.82729 0.73291 0.84750 0.87553 0.85479 0.86354 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.81 11.12 21.65 0.24 -50.57 16 2 C -0.03 -1.35 5.05 84.86 0.43 -0.93 16 3 Si 0.93 44.89 29.57 68.60 2.03 46.92 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.23 -11.86 6.91 84.03 0.58 -11.28 16 8 H 0.05 2.96 5.92 -2.91 -0.02 2.94 16 9 N -0.60 -27.80 2.98 -676.05 -2.01 -29.81 16 10 C 0.18 8.09 5.25 86.36 0.45 8.55 16 11 C -0.14 -4.87 6.08 30.67 0.19 -4.68 16 12 C -0.10 -3.05 5.89 30.62 0.18 -2.87 16 13 C -0.12 -3.84 5.34 30.53 0.16 -3.67 16 14 C 0.16 6.14 3.00 44.83 0.13 6.27 16 15 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 16 C 0.14 5.45 4.42 86.38 0.38 5.83 16 17 N -0.69 -28.27 3.86 -466.40 -1.80 -30.07 16 18 C 0.58 24.18 7.81 86.65 0.68 24.86 16 19 O -0.59 -26.31 14.92 -4.10 -0.06 -26.37 16 20 C -0.26 -9.79 6.31 -18.99 -0.12 -9.91 16 21 C -0.20 -6.71 10.60 23.65 0.25 -6.46 16 22 C -0.03 -0.73 12.03 66.89 0.80 0.08 16 23 O -0.17 -4.99 10.23 4.41 0.05 -4.94 16 24 C 0.10 3.14 6.85 25.26 0.17 3.31 16 25 C -0.11 -3.18 5.62 -11.54 -0.06 -3.24 16 26 C -0.14 -2.78 10.17 30.60 0.31 -2.47 16 27 C -0.16 -3.67 10.23 30.60 0.31 -3.36 16 28 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.05 2.69 6.18 -2.39 -0.01 2.68 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.92 7.42 -2.38 -0.02 1.90 16 39 H 0.41 17.64 6.55 -92.71 -0.61 17.03 16 40 H 0.16 5.26 7.74 -2.91 -0.02 5.24 16 41 H 0.25 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.13 4.25 6.66 -2.39 -0.02 4.24 16 43 H 0.11 1.95 7.96 -2.38 -0.02 1.93 16 44 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -64.40 368.06 3.67 -60.73 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.38 Total: 34.09 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.85 Total: 0.03 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.57 Total: -110.45 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.02 Total: -31.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.40 3.67 -60.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024620282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.670 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds