Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47049 * 270.00025 * 3 2 1 5 5 H 1.48504 * 109.46664 * 150.00292 * 3 2 1 6 6 H 1.48495 * 109.46994 * 30.00383 * 3 2 1 7 7 C 1.38814 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99705 * 159.45301 * 7 2 1 9 9 N 1.36928 * 119.99902 * 339.45182 * 7 2 1 10 10 C 1.47420 * 125.65100 * 326.59409 * 9 7 2 11 11 C 1.54687 * 104.94432 * 204.07304 * 10 9 7 12 12 C 1.55156 * 101.67763 * 323.28020 * 11 10 9 13 13 C 1.47025 * 125.64760 * 146.90389 * 9 7 2 14 14 H 1.09000 * 109.88332 * 59.48440 * 13 9 7 15 15 C 1.53004 * 109.88390 * 298.47817 * 13 9 7 16 16 H 1.09000 * 109.58274 * 52.75264 * 15 13 9 17 17 C 1.53196 * 109.58297 * 292.32740 * 15 13 9 18 18 C 1.53037 * 109.30995 * 185.57342 * 17 15 13 19 19 C 1.53043 * 109.53555 * 61.36733 * 18 17 15 20 20 C 1.53187 * 109.31512 * 298.63431 * 19 18 17 21 21 N 1.46921 * 108.77665 * 54.63243 * 20 19 18 22 22 C 1.34784 * 120.63188 * 126.41412 * 21 20 19 23 23 O 1.21687 * 119.99826 * 185.38923 * 22 21 20 24 24 C 1.46655 * 119.99578 * 5.38755 * 22 21 20 25 25 C 1.36544 * 125.98429 * 187.11724 * 24 22 21 26 26 C 1.40368 * 106.70435 * 179.91130 * 25 24 22 27 27 C 1.35119 * 107.11804 * 0.35704 * 26 25 24 28 28 O 1.33932 * 108.77044 * 359.77560 * 27 26 25 29 29 H 0.96996 * 120.00188 * 179.97438 * 1 2 3 30 30 H 1.08994 * 110.37162 * 323.00649 * 10 9 7 31 31 H 1.09003 * 110.36617 * 85.33084 * 10 9 7 32 32 H 1.08999 * 111.10725 * 205.10870 * 11 10 9 33 33 H 1.08997 * 110.81673 * 81.32545 * 11 10 9 34 34 H 1.08998 * 110.72075 * 276.96999 * 12 11 10 35 35 H 1.09002 * 110.72187 * 153.69867 * 12 11 10 36 36 H 1.08991 * 109.49961 * 305.52837 * 17 15 13 37 37 H 1.09006 * 109.49450 * 65.62891 * 17 15 13 38 38 H 1.08993 * 109.46596 * 301.35016 * 18 17 15 39 39 H 1.09003 * 109.46210 * 181.38314 * 18 17 15 40 40 H 1.08999 * 109.49993 * 178.67930 * 19 18 17 41 41 H 1.09001 * 109.52535 * 58.60495 * 19 18 17 42 42 H 1.09002 * 109.58142 * 294.84435 * 20 19 18 43 43 H 1.08999 * 109.58630 * 174.42374 * 20 19 18 44 44 H 1.07995 * 126.64662 * 0.03950 * 25 24 22 45 45 H 1.08002 * 126.43678 * 180.14858 * 26 25 24 46 46 H 1.08002 * 125.61896 * 179.78461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0388 -1.2318 -0.3288 9 7 1.3909 -2.3504 0.4152 10 6 0.3643 -2.4397 1.4694 11 6 0.4446 -3.8969 1.9821 12 6 0.7412 -4.6746 0.6728 13 6 1.6443 -3.6995 -0.1115 14 1 2.6913 -3.9643 0.0356 15 6 1.2995 -3.7498 -1.6013 16 1 1.8191 -2.9466 -2.1239 17 6 -0.2132 -3.5909 -1.7839 18 6 -0.5674 -3.7807 -3.2606 19 6 -0.1728 -5.1913 -3.7043 20 6 1.3403 -5.3683 -3.5434 21 7 1.7095 -5.0460 -2.1584 22 6 2.4114 -5.9227 -1.4130 23 8 2.6266 -5.6873 -0.2387 24 6 2.9156 -7.1601 -2.0174 25 6 3.5169 -8.1904 -1.3530 26 6 3.8340 -9.1611 -2.3161 27 6 3.4249 -8.6834 -3.5119 28 8 2.8719 -7.4775 -3.3280 29 1 -0.4850 -0.8400 -0.0004 30 1 0.5865 -1.7406 2.2755 31 1 -0.6237 -2.2400 1.0546 32 1 -0.5033 -4.2125 2.4179 33 1 1.2590 -4.0114 2.6975 34 1 -0.1800 -4.8725 0.1247 35 1 1.2706 -5.6030 0.8871 36 1 -0.7325 -4.3398 -1.1861 37 1 -0.5158 -2.5943 -1.4625 38 1 -0.0286 -3.0474 -3.8605 39 1 -1.6402 -3.6439 -3.3973 40 1 -0.4466 -5.3338 -4.7497 41 1 -0.6925 -5.9256 -3.0888 42 1 1.8613 -4.6971 -4.2262 43 1 1.6128 -6.4005 -3.7636 44 1 3.7092 -8.2482 -0.2919 45 1 4.3175 -10.1098 -2.1356 46 1 3.5268 -9.1904 -4.4601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025192027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = 46.704641 kcal Electronic energy + Delta-G solvation = -28961.991635 eV Core-core repulsion = 25241.671269 eV Total energy + Delta-G solvation = -3720.320366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.80792 -40.37632 -37.39523 -36.81656 -33.35582 -32.75117 -32.49534 -31.35809 -29.70006 -29.00027 -27.19167 -24.99463 -24.07447 -23.41564 -22.40402 -21.78326 -20.80599 -20.29361 -19.74239 -18.72925 -17.62415 -17.24108 -16.47519 -16.09691 -15.52302 -15.18191 -14.77508 -14.43796 -14.10791 -13.88138 -13.72055 -13.40600 -13.37987 -13.09599 -12.92434 -12.91514 -12.73628 -12.64201 -11.76136 -11.45068 -11.32378 -11.22829 -10.85151 -10.73816 -10.58024 -10.35590 -10.30238 -10.21561 -10.01737 -9.97516 -9.68208 -9.61956 -9.32406 -9.01846 -8.68294 -8.30295 -8.02944 -6.62213 -5.96551 -3.19856 1.08119 2.28077 2.61099 3.25048 3.36830 3.51492 3.57158 3.71958 4.49300 4.63618 4.77481 4.84455 5.00490 5.06296 5.19880 5.39005 5.44601 5.48012 5.55416 5.61362 5.62337 5.68409 5.72019 5.85815 5.91164 5.99155 6.05193 6.08799 6.10285 6.21655 6.25136 6.35661 6.45564 6.48155 6.50304 6.66209 6.75956 6.83487 6.86949 7.01958 7.05954 7.13640 7.25972 7.48427 7.66269 8.08168 8.39996 8.66326 9.17110 9.91789 10.58335 11.31671 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.004448 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.022442 B = 6293.437507 C = 6636.891383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 1.073 2.927 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.331 4.331 8 H 0.052 0.948 9 N -0.593 5.593 10 C 0.141 3.859 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.161 3.839 14 H 0.074 0.926 15 C 0.140 3.860 16 H 0.079 0.921 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.130 4.130 20 C 0.094 3.906 21 N -0.591 5.591 22 C 0.579 3.421 23 O -0.491 6.491 24 C -0.062 4.062 25 C -0.133 4.133 26 C -0.222 4.222 27 C -0.029 4.029 28 O -0.159 6.159 29 H 0.271 0.729 30 H 0.039 0.961 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.158 0.842 45 H 0.152 0.848 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -17.581 -8.489 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.903 3.097 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.460 4.460 8 H 0.069 0.931 9 N -0.319 5.319 10 C 0.015 3.985 11 C -0.177 4.177 12 C -0.164 4.164 13 C 0.055 3.945 14 H 0.091 0.909 15 C 0.037 3.963 16 H 0.097 0.903 17 C -0.163 4.163 18 C -0.158 4.158 19 C -0.168 4.168 20 C -0.028 4.028 21 N -0.323 5.323 22 C 0.366 3.634 23 O -0.369 6.369 24 C -0.114 4.114 25 C -0.154 4.154 26 C -0.241 4.241 27 C -0.098 4.098 28 O -0.055 6.055 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.176 0.824 45 H 0.170 0.830 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.052 -15.455 -8.101 17.570 hybrid contribution 0.214 -1.872 -0.237 1.899 sum 2.266 -17.326 -8.338 19.362 Atomic orbital electron populations 1.70761 1.06459 1.30540 1.48203 1.25969 0.96732 1.01387 0.98250 0.83407 0.74535 0.75477 0.76307 1.22188 1.21905 1.21299 1.19621 0.94849 0.86092 1.45436 0.93063 1.44661 1.46838 1.02552 1.37801 1.21515 0.92911 0.92910 0.91153 1.22769 0.99665 0.97876 0.97434 1.23115 0.98497 0.98995 0.95826 1.21774 0.99075 0.85720 0.87958 0.90893 1.22140 0.94612 0.81304 0.98277 0.90317 1.21996 0.95868 1.03557 0.94919 1.21543 1.00813 0.95852 0.97571 1.21893 0.95400 0.98355 1.01181 1.22142 0.95625 1.02312 0.82731 1.48207 1.53055 1.17899 1.13186 1.16833 0.80006 0.80857 0.85660 1.90894 1.58285 1.73342 1.14391 1.22635 1.08664 0.99061 0.81063 1.21938 0.99555 0.92514 1.01347 1.21810 1.07641 1.02161 0.92504 1.24454 0.99401 0.85363 1.00563 1.84271 1.62031 1.32337 1.26896 0.91683 0.94215 0.95841 0.92840 0.92295 0.92539 0.89560 0.91824 0.89375 0.91959 0.92178 0.91213 0.91884 0.91465 0.88198 0.82420 0.82992 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.47 13.28 55.49 0.74 -26.73 16 2 C -0.02 -0.58 5.23 -17.43 -0.09 -0.67 16 3 Si 1.07 25.78 29.97 -169.99 -5.09 20.68 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.33 -9.39 9.44 -15.06 -0.14 -9.53 16 8 H 0.05 1.49 7.91 -52.49 -0.42 1.08 16 9 N -0.59 -15.27 2.56 -162.72 -0.42 -15.69 16 10 C 0.14 3.41 5.75 -2.65 -0.02 3.40 16 11 C -0.14 -2.83 7.07 -24.70 -0.17 -3.00 16 12 C -0.13 -2.55 5.17 -24.90 -0.13 -2.68 16 13 C 0.16 3.61 2.28 -66.95 -0.15 3.46 16 14 H 0.07 1.82 5.79 -52.24 -0.30 1.52 16 15 C 0.14 2.80 2.72 -67.60 -0.18 2.62 16 16 H 0.08 1.79 7.79 -51.93 -0.40 1.39 16 17 C -0.13 -2.35 4.96 -26.61 -0.13 -2.49 16 18 C -0.12 -1.81 5.88 -26.69 -0.16 -1.97 16 19 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 20 C 0.09 1.26 6.15 -3.72 -0.02 1.24 16 21 N -0.59 -9.91 2.95 -166.76 -0.49 -10.40 16 22 C 0.58 9.91 7.26 -12.86 -0.09 9.82 16 23 O -0.49 -9.63 9.72 5.20 0.05 -9.58 16 24 C -0.06 -0.88 6.79 -36.80 -0.25 -1.13 16 25 C -0.13 -1.65 10.63 -39.39 -0.42 -2.07 16 26 C -0.22 -2.11 10.87 -39.89 -0.43 -2.54 16 27 C -0.03 -0.25 12.08 29.62 0.36 0.11 16 28 O -0.16 -1.87 7.20 4.98 0.04 -1.84 16 29 H 0.27 8.04 5.35 -40.82 -0.22 7.82 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.60 6.55 -51.93 -0.34 0.26 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.10 5.13 -51.93 -0.27 0.83 16 35 H 0.09 1.73 5.59 -51.84 -0.29 1.44 16 36 H 0.06 1.17 5.48 -51.93 -0.28 0.89 16 37 H 0.09 2.00 7.58 -51.93 -0.39 1.60 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.20 4.13 -53.65 -0.22 0.98 16 44 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -31.89 345.96 -8.75 -40.64 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.58 Total: 4.94 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.20 Total: -7.24 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.17 Total: -52.82 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.09 Total: 20.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.89 -8.75 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.340 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds