Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47049 * 270.00025 * 3 2 1 5 5 H 1.48504 * 109.46664 * 150.00292 * 3 2 1 6 6 H 1.48495 * 109.46994 * 30.00383 * 3 2 1 7 7 C 1.38814 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99705 * 159.45301 * 7 2 1 9 9 N 1.36928 * 119.99902 * 339.45182 * 7 2 1 10 10 C 1.47420 * 125.65100 * 326.59409 * 9 7 2 11 11 C 1.54687 * 104.94432 * 204.07304 * 10 9 7 12 12 C 1.55156 * 101.67763 * 323.28020 * 11 10 9 13 13 C 1.47025 * 125.64760 * 146.90389 * 9 7 2 14 14 H 1.09000 * 109.88332 * 59.48440 * 13 9 7 15 15 C 1.53004 * 109.88390 * 298.47817 * 13 9 7 16 16 H 1.09000 * 109.58274 * 52.75264 * 15 13 9 17 17 C 1.53196 * 109.58297 * 292.32740 * 15 13 9 18 18 C 1.53037 * 109.30995 * 185.57342 * 17 15 13 19 19 C 1.53043 * 109.53555 * 61.36733 * 18 17 15 20 20 C 1.53187 * 109.31512 * 298.63431 * 19 18 17 21 21 N 1.46921 * 108.77665 * 54.63243 * 20 19 18 22 22 C 1.34784 * 120.63188 * 126.41412 * 21 20 19 23 23 O 1.21687 * 119.99826 * 185.38923 * 22 21 20 24 24 C 1.46655 * 119.99578 * 5.38755 * 22 21 20 25 25 C 1.36544 * 125.98429 * 187.11724 * 24 22 21 26 26 C 1.40368 * 106.70435 * 179.91130 * 25 24 22 27 27 C 1.35119 * 107.11804 * 0.35704 * 26 25 24 28 28 O 1.33932 * 108.77044 * 359.77560 * 27 26 25 29 29 H 0.96996 * 120.00188 * 179.97438 * 1 2 3 30 30 H 1.08994 * 110.37162 * 323.00649 * 10 9 7 31 31 H 1.09003 * 110.36617 * 85.33084 * 10 9 7 32 32 H 1.08999 * 111.10725 * 205.10870 * 11 10 9 33 33 H 1.08997 * 110.81673 * 81.32545 * 11 10 9 34 34 H 1.08998 * 110.72075 * 276.96999 * 12 11 10 35 35 H 1.09002 * 110.72187 * 153.69867 * 12 11 10 36 36 H 1.08991 * 109.49961 * 305.52837 * 17 15 13 37 37 H 1.09006 * 109.49450 * 65.62891 * 17 15 13 38 38 H 1.08993 * 109.46596 * 301.35016 * 18 17 15 39 39 H 1.09003 * 109.46210 * 181.38314 * 18 17 15 40 40 H 1.08999 * 109.49993 * 178.67930 * 19 18 17 41 41 H 1.09001 * 109.52535 * 58.60495 * 19 18 17 42 42 H 1.09002 * 109.58142 * 294.84435 * 20 19 18 43 43 H 1.08999 * 109.58630 * 174.42374 * 20 19 18 44 44 H 1.07995 * 126.64662 * 0.03950 * 25 24 22 45 45 H 1.08002 * 126.43678 * 180.14858 * 26 25 24 46 46 H 1.08002 * 125.61896 * 179.78461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0388 -1.2318 -0.3288 9 7 1.3909 -2.3504 0.4152 10 6 0.3643 -2.4397 1.4694 11 6 0.4446 -3.8969 1.9821 12 6 0.7412 -4.6746 0.6728 13 6 1.6443 -3.6995 -0.1115 14 1 2.6913 -3.9643 0.0356 15 6 1.2995 -3.7498 -1.6013 16 1 1.8191 -2.9466 -2.1239 17 6 -0.2132 -3.5909 -1.7839 18 6 -0.5674 -3.7807 -3.2606 19 6 -0.1728 -5.1913 -3.7043 20 6 1.3403 -5.3683 -3.5434 21 7 1.7095 -5.0460 -2.1584 22 6 2.4114 -5.9227 -1.4130 23 8 2.6266 -5.6873 -0.2387 24 6 2.9156 -7.1601 -2.0174 25 6 3.5169 -8.1904 -1.3530 26 6 3.8340 -9.1611 -2.3161 27 6 3.4249 -8.6834 -3.5119 28 8 2.8719 -7.4775 -3.3280 29 1 -0.4850 -0.8400 -0.0004 30 1 0.5865 -1.7406 2.2755 31 1 -0.6237 -2.2400 1.0546 32 1 -0.5033 -4.2125 2.4179 33 1 1.2590 -4.0114 2.6975 34 1 -0.1800 -4.8725 0.1247 35 1 1.2706 -5.6030 0.8871 36 1 -0.7325 -4.3398 -1.1861 37 1 -0.5158 -2.5943 -1.4625 38 1 -0.0286 -3.0474 -3.8605 39 1 -1.6402 -3.6439 -3.3973 40 1 -0.4466 -5.3338 -4.7497 41 1 -0.6925 -5.9256 -3.0888 42 1 1.8613 -4.6971 -4.2262 43 1 1.6128 -6.4005 -3.7636 44 1 3.7092 -8.2482 -0.2919 45 1 4.3175 -10.1098 -2.1356 46 1 3.5268 -9.1904 -4.4601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025192027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = 27.888350 kcal Electronic energy + Delta-G solvation = -28962.807571 eV Core-core repulsion = 25241.671269 eV Total energy + Delta-G solvation = -3721.136301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.69543 -41.80667 -39.00887 -38.28143 -34.77245 -34.31151 -33.74836 -32.84613 -31.03658 -30.63829 -28.78798 -26.55586 -25.94054 -24.71548 -23.63878 -22.70738 -22.32281 -21.54121 -21.46046 -20.13797 -19.50599 -18.38313 -17.56508 -17.31869 -16.97596 -16.71262 -16.17937 -16.07383 -15.70593 -15.30299 -15.27145 -14.92665 -14.77779 -14.63032 -14.36343 -13.93576 -13.87334 -13.51584 -13.46281 -13.11442 -12.99183 -12.74526 -12.61591 -12.51699 -12.11482 -11.94716 -11.85755 -11.76966 -11.55364 -11.45306 -11.34750 -11.18007 -10.94456 -10.69870 -10.28106 -9.65473 -9.46546 -8.78011 -8.19734 -5.44877 0.09653 1.48043 1.53606 1.59708 1.63588 1.80717 2.07730 2.18738 2.62449 3.26625 3.45169 3.65427 3.80877 3.85628 3.88074 3.98880 4.04458 4.07787 4.15773 4.18309 4.26037 4.35448 4.41356 4.55839 4.60210 4.68419 4.73225 4.82698 4.87230 4.91965 4.94871 4.98710 5.03500 5.07345 5.14824 5.16628 5.18709 5.23562 5.38245 5.41980 5.46640 5.54665 5.71769 5.84725 5.94885 6.38356 6.45117 6.96524 7.13474 7.74716 8.42979 9.04359 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.004448 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.022442 B = 6293.437507 C = 6636.891383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.065 4.065 3 Si 1.119 2.881 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.341 4.341 8 H 0.035 0.965 9 N -0.610 5.610 10 C 0.144 3.856 11 C -0.127 4.127 12 C -0.111 4.111 13 C 0.160 3.840 14 H 0.046 0.954 15 C 0.153 3.847 16 H 0.039 0.961 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.120 4.120 20 C 0.091 3.909 21 N -0.594 5.594 22 C 0.575 3.425 23 O -0.530 6.530 24 C -0.100 4.100 25 C -0.128 4.128 26 C -0.231 4.231 27 C 0.001 3.999 28 O -0.165 6.165 29 H 0.261 0.739 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.123 0.877 44 H 0.154 0.846 45 H 0.182 0.818 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -20.659 -10.665 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.263 4.263 3 Si 0.944 3.056 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.470 4.470 8 H 0.053 0.947 9 N -0.336 5.336 10 C 0.019 3.981 11 C -0.165 4.165 12 C -0.148 4.148 13 C 0.055 3.945 14 H 0.064 0.936 15 C 0.049 3.951 16 H 0.057 0.943 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.030 4.030 21 N -0.325 5.325 22 C 0.365 3.635 23 O -0.411 6.411 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.250 4.250 27 C -0.068 4.068 28 O -0.062 6.062 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.140 0.860 44 H 0.171 0.829 45 H 0.200 0.800 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.260 -18.580 -10.309 21.369 hybrid contribution 0.266 -1.085 0.377 1.179 sum 2.526 -19.665 -9.932 22.175 Atomic orbital electron populations 1.70849 1.07200 1.30040 1.50153 1.27279 0.96824 1.04486 0.97668 0.82796 0.73774 0.71914 0.77135 1.20545 1.20734 1.21223 1.19728 0.94363 0.87647 1.45306 0.94743 1.44838 1.46819 1.03159 1.38805 1.21435 0.91695 0.94984 0.90000 1.22714 1.01375 0.94835 0.97603 1.22986 0.98197 0.98433 0.95166 1.21721 0.98229 0.84498 0.90085 0.93639 1.21539 0.95104 0.82294 0.96198 0.94271 1.21814 0.94670 1.00833 0.97914 1.21522 1.01643 0.97847 0.94427 1.21861 0.94465 0.96029 1.03389 1.22416 0.96452 1.03645 0.80532 1.48177 1.53228 1.16498 1.14640 1.17212 0.79174 0.81669 0.85455 1.90842 1.59604 1.74612 1.16023 1.21894 1.12065 0.98659 0.82464 1.22190 0.98077 0.92777 1.01869 1.22166 1.08170 1.02812 0.91853 1.25484 0.95702 0.83371 1.02232 1.84185 1.62641 1.33876 1.25452 0.92745 0.96881 0.97364 0.89652 0.92243 0.91674 0.88864 0.91351 0.94034 0.92881 0.90711 0.87535 0.91412 0.91264 0.86022 0.82860 0.80042 0.72900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.28 21.65 0.29 -58.40 16 2 C -0.06 -3.85 5.23 84.86 0.44 -3.40 16 3 Si 1.12 53.48 29.97 68.60 2.06 55.53 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.34 -20.48 9.44 84.04 0.79 -19.69 16 8 H 0.03 2.15 7.91 -2.91 -0.02 2.12 16 9 N -0.61 -33.39 2.56 -668.72 -1.71 -35.10 16 10 C 0.14 7.38 5.75 86.78 0.50 7.88 16 11 C -0.13 -5.24 7.07 31.91 0.23 -5.01 16 12 C -0.11 -4.53 5.17 31.78 0.16 -4.37 16 13 C 0.16 7.59 2.28 45.34 0.10 7.69 16 14 H 0.05 2.44 5.79 -15.17 -0.09 2.35 16 15 C 0.15 6.48 2.72 44.98 0.12 6.60 16 16 H 0.04 1.94 7.79 -2.39 -0.02 1.92 16 17 C -0.11 -4.45 4.96 30.67 0.15 -4.30 16 18 C -0.12 -3.47 5.88 30.62 0.18 -3.29 16 19 C -0.12 -2.67 6.08 30.67 0.19 -2.49 16 20 C 0.09 2.27 6.15 86.36 0.53 2.80 16 21 N -0.59 -20.15 2.95 -799.73 -2.36 -22.51 16 22 C 0.57 19.93 7.26 86.44 0.63 20.56 16 23 O -0.53 -21.58 9.72 -4.31 -0.04 -21.62 16 24 C -0.10 -2.68 6.79 24.07 0.16 -2.52 16 25 C -0.13 -2.96 10.63 22.39 0.24 -2.73 16 26 C -0.23 -3.46 10.87 22.07 0.24 -3.22 16 27 C 0.00 0.01 12.08 67.10 0.81 0.82 16 28 O -0.16 -3.34 7.20 -5.10 -0.04 -3.38 16 29 H 0.26 16.42 5.35 -92.71 -0.50 15.92 16 30 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.01 0.46 6.55 -2.39 -0.02 0.45 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.53 5.13 -2.39 -0.01 2.52 16 35 H 0.09 3.77 5.59 -8.81 -0.05 3.72 16 36 H 0.07 2.56 5.48 -2.39 -0.01 2.54 16 37 H 0.04 2.00 7.58 -2.38 -0.02 1.98 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.12 2.57 4.13 -29.61 -0.12 2.45 16 44 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 46 H 0.26 0.41 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -75.68 345.96 4.71 -70.97 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.04 Total: 19.16 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 5.48 Total: -4.66 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -3.78 Total: -116.01 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.08 Total: -25.00 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.06 Total: 55.53 kcal Total: -75.68 4.71 -70.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.856 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds