Wall clock time and date at job start Tue Mar 31 2020 12:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48499 * 109.46873 * 89.99897 * 3 2 1 5 5 H 1.48502 * 109.47036 * 209.99713 * 3 2 1 6 6 H 1.48498 * 109.47026 * 330.00288 * 3 2 1 7 7 C 1.38814 * 119.99898 * 179.72501 * 2 1 3 8 8 H 1.08003 * 119.99646 * 149.87052 * 7 2 1 9 9 N 1.36936 * 119.99872 * 329.87210 * 7 2 1 10 10 C 1.47426 * 125.65173 * 4.60396 * 9 7 2 11 11 C 1.54907 * 104.83334 * 204.09477 * 10 9 7 12 12 C 1.55162 * 101.58211 * 322.99271 * 11 10 9 13 13 C 1.47021 * 125.64441 * 184.30143 * 9 7 2 14 14 H 1.09002 * 109.88377 * 59.56112 * 13 9 7 15 15 C 1.52996 * 109.88149 * 298.39346 * 13 9 7 16 16 H 1.09006 * 109.58508 * 195.22939 * 15 13 9 17 17 C 1.53188 * 109.58788 * 315.65390 * 15 13 9 18 18 C 1.53040 * 109.31334 * 174.42627 * 17 15 13 19 19 C 1.53043 * 109.53818 * 298.63202 * 18 17 15 20 20 C 1.53191 * 109.30970 * 61.36658 * 19 18 17 21 21 N 1.46925 * 109.58994 * 74.94366 * 15 13 9 22 22 C 1.34777 * 120.62774 * 6.58584 * 21 15 13 23 23 O 1.21695 * 120.00336 * 6.59933 * 22 21 15 24 24 C 1.46660 * 119.99860 * 186.60744 * 22 21 15 25 25 C 1.36545 * 125.98660 * 188.03021 * 24 22 21 26 26 C 1.40366 * 106.70626 * 179.90546 * 25 24 22 27 27 C 1.35133 * 107.11468 * 0.35509 * 26 25 24 28 28 O 1.33923 * 108.76750 * 359.77780 * 27 26 25 29 29 H 0.97001 * 120.00195 * 172.79530 * 1 2 3 30 30 H 1.08997 * 110.36354 * 322.93750 * 10 9 7 31 31 H 1.09000 * 110.35823 * 85.14589 * 10 9 7 32 32 H 1.09002 * 111.00509 * 81.06802 * 11 10 9 33 33 H 1.08992 * 111.00134 * 204.88232 * 11 10 9 34 34 H 1.08996 * 110.71867 * 153.86775 * 12 11 10 35 35 H 1.08998 * 110.71984 * 276.96204 * 12 11 10 36 36 H 1.09004 * 109.49565 * 294.37523 * 17 15 13 37 37 H 1.08997 * 109.49975 * 54.47325 * 17 15 13 38 38 H 1.09001 * 109.46118 * 178.61473 * 18 17 15 39 39 H 1.08998 * 109.46208 * 58.65293 * 18 17 15 40 40 H 1.09004 * 109.49539 * 301.41765 * 19 18 17 41 41 H 1.08998 * 109.49881 * 181.31710 * 19 18 17 42 42 H 1.09003 * 109.58585 * 185.57765 * 20 19 18 43 43 H 1.08993 * 109.70311 * 65.22118 * 20 19 18 44 44 H 1.08003 * 126.64609 * 0.03416 * 25 24 22 45 45 H 1.07997 * 126.43735 * 180.15035 * 26 25 24 46 46 H 1.07996 * 125.61270 * 179.78500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2022 0.0058 8 1 2.9809 -1.2676 -0.4634 9 7 1.4643 -2.3051 0.6063 10 6 0.1156 -2.3828 1.1967 11 6 0.2043 -3.5253 2.2391 12 6 1.1433 -4.5302 1.5208 13 6 2.1237 -3.6097 0.7635 14 1 3.0413 -3.4941 1.3404 15 6 2.4408 -4.2014 -0.6113 16 1 2.6743 -5.2611 -0.5079 17 6 1.2326 -4.0266 -1.5367 18 6 1.6032 -4.4932 -2.9464 19 6 2.7513 -3.6359 -3.4840 20 6 3.9767 -3.8063 -2.5806 21 7 3.5905 -3.4986 -1.1968 22 6 4.2777 -2.5886 -0.4782 23 8 4.0257 -2.4286 0.7015 24 6 5.3290 -1.7911 -1.1182 25 6 6.1996 -0.9531 -0.4824 26 6 7.0269 -0.4028 -1.4738 27 6 6.6249 -0.9164 -2.6574 28 8 5.6017 -1.7524 -2.4390 29 1 -0.4850 -0.8334 -0.1054 30 1 -0.1393 -1.4424 1.6852 31 1 -0.6208 -2.6231 0.4298 32 1 0.6488 -3.1717 3.1695 33 1 -0.7759 -3.9662 2.4198 34 1 1.6729 -5.1487 2.2454 35 1 0.5819 -5.1514 0.8230 36 1 0.3994 -4.6223 -1.1636 37 1 0.9452 -2.9756 -1.5652 38 1 0.7377 -4.3929 -3.6013 39 1 1.9142 -5.5373 -2.9133 40 1 2.4495 -2.5885 -3.4940 41 1 2.9991 -3.9534 -4.4968 42 1 4.7643 -3.1239 -2.9005 43 1 4.3369 -4.8333 -2.6397 44 1 6.2445 -0.7541 0.5782 45 1 7.8311 0.3014 -1.3200 46 1 7.0576 -0.6900 -3.6206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025192036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:52 Heat of formation + Delta-G solvation = 74.416481 kcal Electronic energy + Delta-G solvation = -29945.115181 eV Core-core repulsion = 26225.996491 eV Total energy + Delta-G solvation = -3719.118690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -42.47302 -40.21045 -37.19263 -36.70160 -33.05115 -32.73146 -32.25795 -31.24940 -29.38380 -28.82380 -27.27851 -25.10131 -23.93477 -23.18672 -22.14502 -21.49559 -20.33619 -20.05145 -19.66907 -18.89558 -17.61893 -17.06568 -16.46036 -15.73387 -15.45225 -15.13809 -14.48474 -14.13467 -13.99582 -13.73083 -13.51229 -13.24973 -13.20646 -12.93791 -12.76170 -12.60248 -12.36842 -12.06143 -11.89933 -11.69017 -11.37923 -11.08299 -10.77733 -10.64101 -10.44782 -10.20906 -10.16355 -10.01556 -9.98602 -9.80541 -9.73747 -9.65197 -9.27808 -8.44108 -8.35252 -8.10528 -7.89499 -6.61774 -5.83334 -2.73713 1.46272 2.63706 2.91861 3.54017 3.63380 3.66704 3.81798 3.82223 4.78791 4.79615 5.04729 5.14491 5.20934 5.23761 5.31304 5.38866 5.52044 5.61021 5.64576 5.66901 5.69867 5.74708 5.92063 5.92941 5.98110 6.02786 6.07138 6.16916 6.25032 6.32515 6.33829 6.39774 6.49095 6.51823 6.56290 6.61682 6.65102 6.68309 6.99664 7.16575 7.19027 7.26074 7.32494 7.55439 7.94572 8.05464 8.70472 8.85343 9.24387 10.08018 10.65365 11.47113 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.008076 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.514037 B = 3466.430208 C = 4656.011918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.038 2.962 4 H -0.297 1.297 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.298 4.298 8 H 0.079 0.921 9 N -0.583 5.583 10 C 0.139 3.861 11 C -0.135 4.135 12 C -0.131 4.131 13 C 0.126 3.874 14 H 0.115 0.885 15 C 0.143 3.857 16 H 0.054 0.946 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.130 4.130 20 C 0.095 3.905 21 N -0.594 5.594 22 C 0.607 3.393 23 O -0.472 6.472 24 C -0.059 4.059 25 C -0.133 4.133 26 C -0.221 4.221 27 C -0.035 4.035 28 O -0.159 6.159 29 H 0.269 0.731 30 H 0.064 0.936 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.157 0.843 45 H 0.150 0.850 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 -9.171 -5.989 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.229 4.229 3 Si 0.870 3.130 4 H -0.225 1.225 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.425 4.425 8 H 0.097 0.903 9 N -0.307 5.307 10 C 0.014 3.986 11 C -0.174 4.174 12 C -0.169 4.169 13 C 0.019 3.981 14 H 0.131 0.869 15 C 0.039 3.961 16 H 0.072 0.928 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.168 4.168 20 C -0.028 4.028 21 N -0.327 5.327 22 C 0.396 3.604 23 O -0.348 6.348 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.240 4.240 27 C -0.104 4.104 28 O -0.056 6.056 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.175 0.825 45 H 0.168 0.832 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.599 -7.517 -5.522 13.384 hybrid contribution 0.244 -1.329 -0.394 1.407 sum 9.843 -8.845 -5.916 14.496 Atomic orbital electron populations 1.70735 1.06750 1.30286 1.49873 1.25368 0.96375 0.99933 1.01267 0.83883 0.75026 0.77638 0.76493 1.22489 1.22137 1.22304 1.20082 1.02296 0.87931 1.32220 0.90323 1.44351 1.11424 1.07688 1.67254 1.21736 0.87955 0.96321 0.92624 1.22785 0.97927 0.97516 0.99130 1.22693 0.98004 0.97448 0.98783 1.22360 0.98149 0.85422 0.92183 0.86898 1.22010 0.84084 0.93663 0.96370 0.92784 1.21901 0.96785 1.04661 0.92990 1.21517 0.97852 0.98402 0.97669 1.21843 0.95513 1.01642 0.97823 1.22124 0.98003 1.00931 0.81723 1.47720 1.30869 1.40868 1.13223 1.16446 0.79261 0.78595 0.86136 1.90818 1.63298 1.65832 1.14831 1.22843 1.02172 1.05513 0.80538 1.21901 0.95272 0.96865 1.01334 1.21764 1.04180 1.05587 0.92440 1.24379 0.90664 0.94972 1.00375 1.84195 1.43011 1.52204 1.26192 0.91925 0.91811 0.97039 0.92050 0.92602 0.92375 0.92576 0.92320 0.88426 0.92450 0.92987 0.91017 0.91742 0.87872 0.92293 0.82548 0.83192 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 12.36 55.49 0.69 -27.97 16 2 C -0.03 -0.89 5.18 -17.43 -0.09 -0.98 16 3 Si 1.04 27.17 30.01 -169.99 -5.10 22.07 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 7 C -0.30 -8.26 7.26 -15.06 -0.11 -8.37 16 8 H 0.08 2.17 3.63 -52.48 -0.19 1.98 16 9 N -0.58 -14.49 1.92 -162.57 -0.31 -14.80 16 10 C 0.14 3.33 5.10 -2.53 -0.01 3.32 16 11 C -0.14 -2.61 7.09 -24.58 -0.17 -2.78 16 12 C -0.13 -2.34 6.33 -24.89 -0.16 -2.50 16 13 C 0.13 2.65 2.32 -66.95 -0.16 2.49 16 14 H 0.11 2.64 4.88 -56.89 -0.28 2.36 16 15 C 0.14 2.66 2.53 -67.60 -0.17 2.49 16 16 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 17 C -0.13 -2.29 4.94 -26.61 -0.13 -2.43 16 18 C -0.12 -1.74 5.88 -26.69 -0.16 -1.90 16 19 C -0.13 -1.91 6.08 -26.61 -0.16 -2.07 16 20 C 0.09 1.42 6.32 -3.71 -0.02 1.40 16 21 N -0.59 -11.00 2.82 -166.76 -0.47 -11.48 16 22 C 0.61 12.57 4.57 -12.86 -0.06 12.51 16 23 O -0.47 -11.10 10.57 5.19 0.05 -11.05 16 24 C -0.06 -1.09 6.60 -36.79 -0.24 -1.34 16 25 C -0.13 -2.28 10.63 -39.39 -0.42 -2.70 16 26 C -0.22 -3.01 10.87 -39.89 -0.43 -3.45 16 27 C -0.04 -0.44 12.08 29.63 0.36 -0.09 16 28 O -0.16 -2.52 7.17 5.01 0.04 -2.49 16 29 H 0.27 8.13 5.63 -40.82 -0.23 7.90 16 30 H 0.06 1.74 6.66 -51.93 -0.35 1.40 16 31 H 0.01 0.29 7.45 -51.93 -0.39 -0.09 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 36 H 0.06 1.03 7.07 -51.93 -0.37 0.66 16 37 H 0.10 2.27 6.43 -51.93 -0.33 1.94 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.53 3.83 -54.78 -0.21 1.32 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.16 2.63 8.06 -52.48 -0.42 2.21 16 45 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -33.04 339.69 -8.69 -41.72 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.56 Total: 5.27 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.14 Total: -6.39 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.10 Total: -54.25 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -5.10 Total: 22.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.04 -8.69 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.141 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds