Wall clock time and date at job start Tue Mar 31 2020 12:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48499 * 109.46873 * 89.99897 * 3 2 1 5 5 H 1.48502 * 109.47036 * 209.99713 * 3 2 1 6 6 H 1.48498 * 109.47026 * 330.00288 * 3 2 1 7 7 C 1.38814 * 119.99898 * 179.72501 * 2 1 3 8 8 H 1.08003 * 119.99646 * 149.87052 * 7 2 1 9 9 N 1.36936 * 119.99872 * 329.87210 * 7 2 1 10 10 C 1.47426 * 125.65173 * 4.60396 * 9 7 2 11 11 C 1.54907 * 104.83334 * 204.09477 * 10 9 7 12 12 C 1.55162 * 101.58211 * 322.99271 * 11 10 9 13 13 C 1.47021 * 125.64441 * 184.30143 * 9 7 2 14 14 H 1.09002 * 109.88377 * 59.56112 * 13 9 7 15 15 C 1.52996 * 109.88149 * 298.39346 * 13 9 7 16 16 H 1.09006 * 109.58508 * 195.22939 * 15 13 9 17 17 C 1.53188 * 109.58788 * 315.65390 * 15 13 9 18 18 C 1.53040 * 109.31334 * 174.42627 * 17 15 13 19 19 C 1.53043 * 109.53818 * 298.63202 * 18 17 15 20 20 C 1.53191 * 109.30970 * 61.36658 * 19 18 17 21 21 N 1.46925 * 109.58994 * 74.94366 * 15 13 9 22 22 C 1.34777 * 120.62774 * 6.58584 * 21 15 13 23 23 O 1.21695 * 120.00336 * 6.59933 * 22 21 15 24 24 C 1.46660 * 119.99860 * 186.60744 * 22 21 15 25 25 C 1.36545 * 125.98660 * 188.03021 * 24 22 21 26 26 C 1.40366 * 106.70626 * 179.90546 * 25 24 22 27 27 C 1.35133 * 107.11468 * 0.35509 * 26 25 24 28 28 O 1.33923 * 108.76750 * 359.77780 * 27 26 25 29 29 H 0.97001 * 120.00195 * 172.79530 * 1 2 3 30 30 H 1.08997 * 110.36354 * 322.93750 * 10 9 7 31 31 H 1.09000 * 110.35823 * 85.14589 * 10 9 7 32 32 H 1.09002 * 111.00509 * 81.06802 * 11 10 9 33 33 H 1.08992 * 111.00134 * 204.88232 * 11 10 9 34 34 H 1.08996 * 110.71867 * 153.86775 * 12 11 10 35 35 H 1.08998 * 110.71984 * 276.96204 * 12 11 10 36 36 H 1.09004 * 109.49565 * 294.37523 * 17 15 13 37 37 H 1.08997 * 109.49975 * 54.47325 * 17 15 13 38 38 H 1.09001 * 109.46118 * 178.61473 * 18 17 15 39 39 H 1.08998 * 109.46208 * 58.65293 * 18 17 15 40 40 H 1.09004 * 109.49539 * 301.41765 * 19 18 17 41 41 H 1.08998 * 109.49881 * 181.31710 * 19 18 17 42 42 H 1.09003 * 109.58585 * 185.57765 * 20 19 18 43 43 H 1.08993 * 109.70311 * 65.22118 * 20 19 18 44 44 H 1.08003 * 126.64609 * 0.03416 * 25 24 22 45 45 H 1.07997 * 126.43735 * 180.15035 * 26 25 24 46 46 H 1.07996 * 125.61270 * 179.78500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2022 0.0058 8 1 2.9809 -1.2676 -0.4634 9 7 1.4643 -2.3051 0.6063 10 6 0.1156 -2.3828 1.1967 11 6 0.2043 -3.5253 2.2391 12 6 1.1433 -4.5302 1.5208 13 6 2.1237 -3.6097 0.7635 14 1 3.0413 -3.4941 1.3404 15 6 2.4408 -4.2014 -0.6113 16 1 2.6743 -5.2611 -0.5079 17 6 1.2326 -4.0266 -1.5367 18 6 1.6032 -4.4932 -2.9464 19 6 2.7513 -3.6359 -3.4840 20 6 3.9767 -3.8063 -2.5806 21 7 3.5905 -3.4986 -1.1968 22 6 4.2777 -2.5886 -0.4782 23 8 4.0257 -2.4286 0.7015 24 6 5.3290 -1.7911 -1.1182 25 6 6.1996 -0.9531 -0.4824 26 6 7.0269 -0.4028 -1.4738 27 6 6.6249 -0.9164 -2.6574 28 8 5.6017 -1.7524 -2.4390 29 1 -0.4850 -0.8334 -0.1054 30 1 -0.1393 -1.4424 1.6852 31 1 -0.6208 -2.6231 0.4298 32 1 0.6488 -3.1717 3.1695 33 1 -0.7759 -3.9662 2.4198 34 1 1.6729 -5.1487 2.2454 35 1 0.5819 -5.1514 0.8230 36 1 0.3994 -4.6223 -1.1636 37 1 0.9452 -2.9756 -1.5652 38 1 0.7377 -4.3929 -3.6013 39 1 1.9142 -5.5373 -2.9133 40 1 2.4495 -2.5885 -3.4940 41 1 2.9991 -3.9534 -4.4968 42 1 4.7643 -3.1239 -2.9005 43 1 4.3369 -4.8333 -2.6397 44 1 6.2445 -0.7541 0.5782 45 1 7.8311 0.3014 -1.3200 46 1 7.0576 -0.6900 -3.6206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025192036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:50 Heat of formation + Delta-G solvation = 53.793358 kcal Electronic energy + Delta-G solvation = -29946.009467 eV Core-core repulsion = 26225.996491 eV Total energy + Delta-G solvation = -3720.012976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.67935 -41.72496 -38.84047 -38.18158 -34.75096 -34.24354 -33.61966 -32.72175 -30.75692 -30.61623 -28.85444 -26.73912 -25.67317 -24.56309 -23.49794 -22.70027 -21.80531 -21.63864 -21.24115 -20.38044 -19.52904 -18.42872 -17.89838 -17.00763 -16.89854 -16.66832 -15.97319 -15.81774 -15.54316 -15.39377 -15.05156 -14.86140 -14.69553 -14.33636 -14.00758 -13.87917 -13.74135 -13.52806 -13.51033 -13.37640 -13.01432 -12.64766 -12.49025 -12.15969 -12.04882 -11.93683 -11.78102 -11.67572 -11.59272 -11.44284 -11.31542 -11.26953 -10.95630 -10.34208 -9.88668 -9.67340 -9.35608 -8.61125 -8.07227 -4.91272 0.17933 1.45995 1.49300 1.54189 1.68235 1.70063 2.23845 2.36010 2.69431 3.30814 3.57007 3.69793 3.89584 3.92177 3.98794 4.04468 4.10371 4.14962 4.19118 4.26289 4.30966 4.40792 4.45947 4.58553 4.61013 4.75522 4.83717 4.86911 4.91624 4.93544 4.99505 5.03532 5.06065 5.11244 5.15737 5.24869 5.30066 5.31135 5.44688 5.46237 5.57773 5.70510 5.91978 5.95917 6.01211 6.53915 6.55660 7.12662 7.32922 7.97398 8.56550 9.25536 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.008076 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.514037 B = 3466.430208 C = 4656.011918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.099 4.099 3 Si 1.076 2.924 4 H -0.301 1.301 5 H -0.280 1.280 6 H -0.300 1.300 7 C -0.269 4.269 8 H 0.081 0.919 9 N -0.595 5.595 10 C 0.143 3.857 11 C -0.124 4.124 12 C -0.119 4.119 13 C 0.115 3.885 14 H 0.095 0.905 15 C 0.144 3.856 16 H 0.087 0.913 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.125 4.125 20 C 0.090 3.910 21 N -0.597 5.597 22 C 0.597 3.403 23 O -0.519 6.519 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.231 4.231 27 C -0.009 4.009 28 O -0.163 6.163 29 H 0.257 0.743 30 H 0.019 0.981 31 H -0.002 1.002 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.146 0.854 45 H 0.182 0.818 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.297 -11.533 -8.039 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.292 4.292 3 Si 0.907 3.093 4 H -0.229 1.229 5 H -0.206 1.206 6 H -0.227 1.227 7 C -0.398 4.398 8 H 0.099 0.901 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.162 4.162 12 C -0.157 4.157 13 C 0.010 3.990 14 H 0.112 0.888 15 C 0.040 3.960 16 H 0.105 0.895 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.163 4.163 20 C -0.031 4.031 21 N -0.328 5.328 22 C 0.387 3.613 23 O -0.399 6.399 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.250 4.250 27 C -0.077 4.077 28 O -0.060 6.060 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.016 0.984 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.164 0.836 45 H 0.200 0.800 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 11.909 -9.928 -7.602 17.268 hybrid contribution -0.303 -0.652 0.184 0.742 sum 11.606 -10.580 -7.418 17.368 Atomic orbital electron populations 1.70797 1.07445 1.29533 1.54192 1.26240 0.96739 1.02659 1.03539 0.83294 0.74617 0.75198 0.76233 1.22934 1.20588 1.22724 1.20351 1.01336 0.88683 1.29445 0.90133 1.44525 1.11953 1.08881 1.66520 1.21580 0.87430 0.96125 0.93150 1.22689 1.00068 0.96109 0.97342 1.22675 0.97105 0.96773 0.99157 1.22434 0.98013 0.84439 0.94162 0.88841 1.21932 0.84428 0.94978 0.94670 0.89487 1.21745 0.96936 1.01197 0.95669 1.21498 0.98238 0.99974 0.95134 1.21820 0.95287 0.99331 0.99889 1.22404 0.98231 1.02860 0.79640 1.47899 1.30249 1.40137 1.14525 1.16827 0.79643 0.78846 0.86002 1.90790 1.65231 1.67356 1.16541 1.22449 1.03304 1.07462 0.81917 1.22165 0.95735 0.96720 1.01786 1.22141 1.04756 1.06392 0.91696 1.25474 0.88158 0.91932 1.02172 1.84166 1.44088 1.53062 1.24657 0.93162 0.96256 0.98444 0.92623 0.89612 0.89607 0.90532 0.91662 0.94223 0.91915 0.89730 0.94990 0.87970 0.87532 0.89027 0.83593 0.80037 0.72806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.48 12.36 21.65 0.27 -63.22 16 2 C -0.10 -6.11 5.18 84.86 0.44 -5.67 16 3 Si 1.08 57.57 30.01 68.60 2.06 59.63 16 4 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 5 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 7 C -0.27 -15.60 7.26 84.03 0.61 -14.99 16 8 H 0.08 4.63 3.63 -2.91 -0.01 4.62 16 9 N -0.59 -30.77 1.92 -668.24 -1.28 -32.05 16 10 C 0.14 7.17 5.10 86.85 0.44 7.62 16 11 C -0.12 -4.73 7.09 31.99 0.23 -4.51 16 12 C -0.12 -4.03 6.33 31.79 0.20 -3.83 16 13 C 0.12 4.85 2.32 45.34 0.11 4.96 16 14 H 0.10 4.46 4.88 -80.95 -0.40 4.06 16 15 C 0.14 5.14 2.53 44.97 0.11 5.26 16 16 H 0.09 2.58 8.10 -2.38 -0.02 2.56 16 17 C -0.12 -4.19 4.94 30.67 0.15 -4.04 16 18 C -0.11 -3.00 5.88 30.62 0.18 -2.82 16 19 C -0.13 -3.38 6.08 30.67 0.19 -3.20 16 20 C 0.09 2.46 6.32 86.36 0.55 3.00 16 21 N -0.60 -21.57 2.82 -799.73 -2.26 -23.83 16 22 C 0.60 25.03 4.57 86.44 0.40 25.42 16 23 O -0.52 -25.35 10.57 -4.33 -0.05 -25.40 16 24 C -0.10 -3.68 6.60 24.07 0.16 -3.52 16 25 C -0.14 -4.86 10.63 22.39 0.24 -4.62 16 26 C -0.23 -5.67 10.87 22.07 0.24 -5.43 16 27 C -0.01 -0.20 12.08 67.10 0.81 0.61 16 28 O -0.16 -4.80 7.17 -4.99 -0.04 -4.84 16 29 H 0.26 16.73 5.63 -92.71 -0.52 16.21 16 30 H 0.02 1.12 6.66 -2.39 -0.02 1.11 16 31 H 0.00 -0.11 7.45 -2.39 -0.02 -0.12 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.29 6.74 -2.39 -0.02 2.28 16 36 H 0.06 2.20 7.07 -2.39 -0.02 2.18 16 37 H 0.04 1.90 6.43 -2.39 -0.02 1.88 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 2.90 3.83 -47.60 -0.18 2.72 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.15 5.10 8.06 -2.91 -0.02 5.07 16 45 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 46 H 0.26 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.99 339.69 4.43 -75.56 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.68 Total: 19.90 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.05 Total: -5.76 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -3.28 Total: -119.10 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.08 Total: -30.24 kcal Atomic # 14 Polarization: 57.57 SS G_CDS: 2.06 Total: 59.63 kcal Total: -79.99 4.43 -75.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.353 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds