Wall clock time and date at job start Tue Mar 31 2020 12:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47217 * 264.39138 * 3 2 1 5 5 H 1.48501 * 109.47411 * 24.39145 * 3 2 1 6 6 H 1.48499 * 109.47561 * 144.39087 * 3 2 1 7 7 C 1.38812 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 342.36141 * 7 2 1 9 9 N 1.36935 * 119.99754 * 162.35637 * 7 2 1 10 10 C 1.47748 * 125.82634 * 328.55239 * 9 7 2 11 11 C 1.54906 * 104.84296 * 155.82746 * 10 9 7 12 12 C 1.55154 * 101.58336 * 37.09695 * 11 10 9 13 13 C 1.47024 * 125.64833 * 148.64201 * 9 7 2 14 14 H 1.08997 * 109.88294 * 300.60287 * 13 9 7 15 15 C 1.53004 * 109.88200 * 61.61088 * 13 9 7 16 16 H 1.09000 * 109.58114 * 306.11057 * 15 13 9 17 17 C 1.53193 * 109.58623 * 66.53491 * 15 13 9 18 18 C 1.53036 * 109.31154 * 174.41969 * 17 15 13 19 19 C 1.53040 * 109.54352 * 298.64293 * 18 17 15 20 20 C 1.52761 * 109.38498 * 61.23511 * 19 18 17 21 21 N 1.46922 * 109.00873 * 305.58934 * 20 19 18 22 22 C 1.34769 * 120.63311 * 233.58136 * 21 20 19 23 23 O 1.21697 * 120.00139 * 176.05539 * 22 21 20 24 24 C 1.46655 * 120.00330 * 356.05883 * 22 21 20 25 25 C 1.36537 * 125.99333 * 172.64714 * 24 22 21 26 26 C 1.40360 * 106.71336 * 179.91162 * 25 24 22 27 27 C 1.35137 * 107.11298 * 0.35159 * 26 25 24 28 28 O 1.33934 * 108.76246 * 359.78146 * 27 26 25 29 29 H 0.97002 * 120.00105 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.28550 * 37.02314 * 10 9 7 31 31 H 1.09001 * 110.52876 * 274.75740 * 10 9 7 32 32 H 1.08998 * 111.00654 * 279.02165 * 11 10 9 33 33 H 1.09004 * 111.00226 * 155.17143 * 11 10 9 34 34 H 1.08999 * 110.71923 * 206.13782 * 12 11 10 35 35 H 1.08999 * 110.71985 * 82.86233 * 12 11 10 36 36 H 1.08990 * 109.49971 * 294.37675 * 17 15 13 37 37 H 1.09007 * 109.49380 * 54.44341 * 17 15 13 38 38 H 1.09003 * 109.45853 * 58.65678 * 18 17 15 39 39 H 1.08997 * 109.46428 * 178.62847 * 18 17 15 40 40 H 1.08996 * 109.50019 * 181.31822 * 19 18 17 41 41 H 1.09005 * 109.49181 * 301.37710 * 19 18 17 42 42 H 1.09002 * 109.50986 * 185.70853 * 20 19 18 43 43 H 1.08999 * 109.42925 * 65.42818 * 20 19 18 44 44 H 1.08007 * 126.64256 * 0.03796 * 25 24 22 45 45 H 1.08000 * 126.45047 * 180.11505 * 26 25 24 46 46 H 1.07996 * 125.61622 * 179.78234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6162 1.9779 -1.3934 5 1 1.3935 2.6840 0.5782 6 1 3.4835 1.4773 0.8152 7 6 2.0102 -1.2022 0.0005 8 1 1.5083 -2.1154 0.2843 9 7 3.3312 -1.2302 -0.3589 10 6 3.9806 -0.3330 -1.3368 11 6 5.4778 -0.3298 -0.9391 12 6 5.6873 -1.8038 -0.5024 13 6 4.3418 -2.1614 0.1637 14 1 4.4228 -2.0520 1.2451 15 6 3.9543 -3.5997 -0.1859 16 1 2.9415 -3.8003 0.1635 17 6 4.0256 -3.7964 -1.7035 18 6 3.7734 -5.2689 -2.0354 19 6 4.8560 -6.1331 -1.3848 20 6 4.7977 -5.9621 0.1321 21 7 4.8907 -4.5321 0.4564 22 6 5.8209 -4.0835 1.3223 23 8 5.9350 -2.8895 1.5282 24 6 6.6956 -5.0341 2.0166 25 6 7.7637 -4.7138 2.8044 26 6 8.3054 -5.9251 3.2621 27 6 7.5583 -6.9196 2.7338 28 8 6.5893 -6.3787 1.9839 29 1 -0.4850 0.8401 0.0004 30 1 3.5659 0.6721 -1.2610 31 1 3.8578 -0.7180 -2.3491 32 1 5.6603 0.3532 -0.1095 33 1 6.1083 -0.0820 -1.7930 34 1 6.5049 -1.8812 0.2143 35 1 5.8703 -2.4402 -1.3681 36 1 3.2678 -3.1796 -2.1863 37 1 5.0134 -3.5063 -2.0619 38 1 2.7956 -5.5645 -1.6549 39 1 3.7994 -5.4072 -3.1162 40 1 4.6891 -7.1793 -1.6410 41 1 5.8360 -5.8218 -1.7466 42 1 5.6301 -6.4957 0.5908 43 1 3.8547 -6.3610 0.5059 44 1 8.1213 -3.7206 3.0330 45 1 9.1609 -6.0409 3.9110 46 1 7.7166 -7.9763 2.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025192038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:57 Heat of formation + Delta-G solvation = 62.163435 kcal Electronic energy + Delta-G solvation = -28879.317646 eV Core-core repulsion = 25159.667624 eV Total energy + Delta-G solvation = -3719.650022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83532 -40.47771 -37.48350 -36.94387 -33.39685 -32.69554 -32.44156 -31.54361 -29.88564 -29.65021 -27.48642 -25.06035 -24.17721 -23.49447 -22.45325 -21.82033 -21.05928 -20.46099 -19.91404 -18.75799 -17.44573 -17.04612 -16.46987 -16.17623 -15.73932 -15.53222 -14.92169 -14.69593 -14.21414 -14.13296 -13.65987 -13.55360 -13.39269 -13.06105 -12.97842 -12.89554 -12.72399 -12.57418 -12.17425 -11.74617 -11.41626 -11.35015 -11.13243 -10.98245 -10.73177 -10.56958 -10.48697 -10.32852 -10.08507 -9.87626 -9.75626 -9.63149 -9.49724 -8.87040 -8.70363 -8.39448 -8.15007 -6.73753 -5.88353 -3.25300 1.05427 2.26196 2.57228 3.18970 3.32057 3.39015 3.54632 3.62602 4.45228 4.62843 4.74508 4.81296 4.94173 4.98790 5.10664 5.17695 5.31893 5.38510 5.44586 5.52207 5.59257 5.64847 5.67983 5.70435 5.79781 5.83126 5.92142 5.96888 6.04111 6.11475 6.20074 6.23410 6.30769 6.32965 6.37907 6.53473 6.61303 6.68452 6.74818 6.79835 6.91911 6.97567 7.03792 7.40260 7.58558 7.96836 8.31962 8.46209 8.96714 9.78132 10.37116 11.28460 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004635 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.001952 B = 6039.041517 C = 6681.689438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.893 3.107 4 H -0.284 1.284 5 H -0.307 1.307 6 H -0.272 1.272 7 C -0.238 4.238 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.111 3.889 11 C -0.138 4.138 12 C -0.127 4.127 13 C 0.161 3.839 14 H 0.083 0.917 15 C 0.138 3.862 16 H 0.080 0.920 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.094 3.906 21 N -0.591 5.591 22 C 0.580 3.420 23 O -0.490 6.490 24 C -0.063 4.063 25 C -0.132 4.132 26 C -0.222 4.222 27 C -0.028 4.028 28 O -0.159 6.159 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.158 0.842 45 H 0.152 0.848 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.306 -15.993 0.707 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.236 1.236 6 H -0.198 1.198 7 C -0.366 4.366 8 H 0.102 0.898 9 N -0.330 5.330 10 C -0.013 4.013 11 C -0.176 4.176 12 C -0.165 4.165 13 C 0.055 3.945 14 H 0.100 0.900 15 C 0.034 3.966 16 H 0.098 0.902 17 C -0.165 4.165 18 C -0.159 4.159 19 C -0.169 4.169 20 C -0.029 4.029 21 N -0.323 5.323 22 C 0.368 3.632 23 O -0.367 6.367 24 C -0.115 4.115 25 C -0.152 4.152 26 C -0.241 4.241 27 C -0.097 4.097 28 O -0.055 6.055 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.176 0.824 45 H 0.170 0.830 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 15.845 -15.393 0.679 22.101 hybrid contribution 0.505 0.775 0.065 0.927 sum 16.350 -14.618 0.744 21.944 Atomic orbital electron populations 1.69797 1.05696 1.26552 1.53521 1.25247 0.95150 0.97682 0.99110 0.86798 0.79394 0.84057 0.77160 1.21299 1.23594 1.19783 1.18544 0.82334 0.94145 1.41585 0.89847 1.44952 1.06066 1.37399 1.44617 1.22072 0.91158 0.95196 0.92904 1.22785 0.97091 0.97732 1.00036 1.23167 0.98728 0.95168 0.99400 1.21650 0.87366 0.86669 0.98851 0.90024 1.22072 0.91825 0.90893 0.91789 0.90209 1.22005 1.02882 0.95528 0.96072 1.21560 0.98521 0.95809 1.00005 1.21820 1.00008 1.00102 0.94975 1.22089 1.03332 0.81331 0.96117 1.48092 1.32979 1.08470 1.42801 1.16822 0.79903 0.86246 0.80272 1.90904 1.68441 1.13243 1.64153 1.22583 1.01962 0.80482 1.06478 1.21944 0.95232 1.00288 0.97756 1.21817 1.04000 0.92055 1.06219 1.24469 0.89910 0.99694 0.95653 1.84255 1.45923 1.20022 1.55333 0.92812 0.93844 0.95496 0.91939 0.92338 0.89067 0.92297 0.89551 0.91526 0.91829 0.92109 0.91106 0.91855 0.87972 0.91359 0.82391 0.82985 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.51 13.97 55.49 0.78 -27.73 16 2 C 0.03 0.81 5.46 -17.43 -0.10 0.71 16 3 Si 0.89 23.70 25.02 -169.99 -4.25 19.44 16 4 H -0.28 -7.28 6.40 56.52 0.36 -6.91 16 5 H -0.31 -8.23 7.11 56.52 0.40 -7.83 16 6 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.80 10.16 -15.06 -0.15 -6.96 16 8 H 0.08 2.52 7.48 -52.49 -0.39 2.12 16 9 N -0.60 -14.90 2.43 -162.31 -0.39 -15.30 16 10 C 0.11 2.54 6.27 -2.35 -0.01 2.52 16 11 C -0.14 -2.69 7.08 -24.59 -0.17 -2.87 16 12 C -0.13 -2.39 5.11 -24.90 -0.13 -2.52 16 13 C 0.16 3.42 2.28 -66.95 -0.15 3.27 16 14 H 0.08 1.97 5.83 -51.93 -0.30 1.67 16 15 C 0.14 2.52 2.71 -67.59 -0.18 2.33 16 16 H 0.08 1.64 7.38 -51.93 -0.38 1.26 16 17 C -0.13 -2.06 4.96 -26.61 -0.13 -2.19 16 18 C -0.12 -1.56 5.88 -26.69 -0.16 -1.72 16 19 C -0.13 -1.43 6.06 -26.83 -0.16 -1.59 16 20 C 0.09 1.13 6.16 -3.93 -0.02 1.11 16 21 N -0.59 -9.16 2.95 -167.02 -0.49 -9.65 16 22 C 0.58 9.40 7.22 -12.87 -0.09 9.31 16 23 O -0.49 -9.24 9.71 5.19 0.05 -9.19 16 24 C -0.06 -0.85 6.80 -36.80 -0.25 -1.10 16 25 C -0.13 -1.57 10.63 -39.40 -0.42 -1.99 16 26 C -0.22 -2.01 10.88 -39.89 -0.43 -2.45 16 27 C -0.03 -0.23 12.08 29.63 0.36 0.13 16 28 O -0.16 -1.76 7.16 4.99 0.04 -1.73 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.04 1.08 2.47 -51.93 -0.13 0.95 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.72 5.56 -51.93 -0.29 1.43 16 35 H 0.06 1.02 5.18 -51.93 -0.27 0.75 16 36 H 0.09 1.62 7.98 -51.93 -0.41 1.21 16 37 H 0.07 1.06 5.51 -51.93 -0.29 0.78 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.13 4.03 -54.14 -0.22 0.91 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.20 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -32.72 340.65 -7.87 -40.59 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.51 Total: 2.44 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.01 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.11 Total: -52.68 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.25 Total: 19.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.72 -7.87 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.756 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds