Wall clock time and date at job start Tue Mar 31 2020 12:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47217 * 264.39138 * 3 2 1 5 5 H 1.48501 * 109.47411 * 24.39145 * 3 2 1 6 6 H 1.48499 * 109.47561 * 144.39087 * 3 2 1 7 7 C 1.38812 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 342.36141 * 7 2 1 9 9 N 1.36935 * 119.99754 * 162.35637 * 7 2 1 10 10 C 1.47748 * 125.82634 * 328.55239 * 9 7 2 11 11 C 1.54906 * 104.84296 * 155.82746 * 10 9 7 12 12 C 1.55154 * 101.58336 * 37.09695 * 11 10 9 13 13 C 1.47024 * 125.64833 * 148.64201 * 9 7 2 14 14 H 1.08997 * 109.88294 * 300.60287 * 13 9 7 15 15 C 1.53004 * 109.88200 * 61.61088 * 13 9 7 16 16 H 1.09000 * 109.58114 * 306.11057 * 15 13 9 17 17 C 1.53193 * 109.58623 * 66.53491 * 15 13 9 18 18 C 1.53036 * 109.31154 * 174.41969 * 17 15 13 19 19 C 1.53040 * 109.54352 * 298.64293 * 18 17 15 20 20 C 1.52761 * 109.38498 * 61.23511 * 19 18 17 21 21 N 1.46922 * 109.00873 * 305.58934 * 20 19 18 22 22 C 1.34769 * 120.63311 * 233.58136 * 21 20 19 23 23 O 1.21697 * 120.00139 * 176.05539 * 22 21 20 24 24 C 1.46655 * 120.00330 * 356.05883 * 22 21 20 25 25 C 1.36537 * 125.99333 * 172.64714 * 24 22 21 26 26 C 1.40360 * 106.71336 * 179.91162 * 25 24 22 27 27 C 1.35137 * 107.11298 * 0.35159 * 26 25 24 28 28 O 1.33934 * 108.76246 * 359.78146 * 27 26 25 29 29 H 0.97002 * 120.00105 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.28550 * 37.02314 * 10 9 7 31 31 H 1.09001 * 110.52876 * 274.75740 * 10 9 7 32 32 H 1.08998 * 111.00654 * 279.02165 * 11 10 9 33 33 H 1.09004 * 111.00226 * 155.17143 * 11 10 9 34 34 H 1.08999 * 110.71923 * 206.13782 * 12 11 10 35 35 H 1.08999 * 110.71985 * 82.86233 * 12 11 10 36 36 H 1.08990 * 109.49971 * 294.37675 * 17 15 13 37 37 H 1.09007 * 109.49380 * 54.44341 * 17 15 13 38 38 H 1.09003 * 109.45853 * 58.65678 * 18 17 15 39 39 H 1.08997 * 109.46428 * 178.62847 * 18 17 15 40 40 H 1.08996 * 109.50019 * 181.31822 * 19 18 17 41 41 H 1.09005 * 109.49181 * 301.37710 * 19 18 17 42 42 H 1.09002 * 109.50986 * 185.70853 * 20 19 18 43 43 H 1.08999 * 109.42925 * 65.42818 * 20 19 18 44 44 H 1.08007 * 126.64256 * 0.03796 * 25 24 22 45 45 H 1.08000 * 126.45047 * 180.11505 * 26 25 24 46 46 H 1.07996 * 125.61622 * 179.78234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6162 1.9779 -1.3934 5 1 1.3935 2.6840 0.5782 6 1 3.4835 1.4773 0.8152 7 6 2.0102 -1.2022 0.0005 8 1 1.5083 -2.1154 0.2843 9 7 3.3312 -1.2302 -0.3589 10 6 3.9806 -0.3330 -1.3368 11 6 5.4778 -0.3298 -0.9391 12 6 5.6873 -1.8038 -0.5024 13 6 4.3418 -2.1614 0.1637 14 1 4.4228 -2.0520 1.2451 15 6 3.9543 -3.5997 -0.1859 16 1 2.9415 -3.8003 0.1635 17 6 4.0256 -3.7964 -1.7035 18 6 3.7734 -5.2689 -2.0354 19 6 4.8560 -6.1331 -1.3848 20 6 4.7977 -5.9621 0.1321 21 7 4.8907 -4.5321 0.4564 22 6 5.8209 -4.0835 1.3223 23 8 5.9350 -2.8895 1.5282 24 6 6.6956 -5.0341 2.0166 25 6 7.7637 -4.7138 2.8044 26 6 8.3054 -5.9251 3.2621 27 6 7.5583 -6.9196 2.7338 28 8 6.5893 -6.3787 1.9839 29 1 -0.4850 0.8401 0.0004 30 1 3.5659 0.6721 -1.2610 31 1 3.8578 -0.7180 -2.3491 32 1 5.6603 0.3532 -0.1095 33 1 6.1083 -0.0820 -1.7930 34 1 6.5049 -1.8812 0.2143 35 1 5.8703 -2.4402 -1.3681 36 1 3.2678 -3.1796 -2.1863 37 1 5.0134 -3.5063 -2.0619 38 1 2.7956 -5.5645 -1.6549 39 1 3.7994 -5.4072 -3.1162 40 1 4.6891 -7.1793 -1.6410 41 1 5.8360 -5.8218 -1.7466 42 1 5.6301 -6.4957 0.5908 43 1 3.8547 -6.3610 0.5059 44 1 8.1213 -3.7206 3.0330 45 1 9.1609 -6.0409 3.9110 46 1 7.7166 -7.9763 2.8905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025192038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:56 Heat of formation + Delta-G solvation = 41.277411 kcal Electronic energy + Delta-G solvation = -28880.223332 eV Core-core repulsion = 25159.667624 eV Total energy + Delta-G solvation = -3720.555708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.67604 -41.80556 -39.00791 -38.27548 -34.66477 -34.27753 -33.71268 -32.91706 -31.80014 -30.62544 -28.93414 -26.47488 -26.03026 -24.67166 -23.59749 -22.72133 -22.60114 -21.59526 -21.35461 -20.06176 -19.04705 -18.33856 -17.92036 -17.38600 -17.09189 -16.89453 -16.42856 -16.03600 -15.54626 -15.27351 -15.16126 -15.00969 -14.75775 -14.55898 -14.25845 -14.06023 -13.89721 -13.84645 -13.49662 -13.25923 -13.09571 -12.96465 -12.77018 -12.57066 -12.42009 -11.94174 -11.80431 -11.70004 -11.58153 -11.44040 -11.28574 -11.12653 -10.92378 -10.65437 -10.34670 -9.62251 -9.42792 -8.78938 -8.19570 -5.52123 0.12144 1.24097 1.36078 1.48271 1.49983 1.61806 2.10744 2.20779 2.40109 3.06195 3.38480 3.55730 3.83746 3.89977 3.91207 4.00385 4.05994 4.08281 4.16308 4.18470 4.27232 4.38233 4.39096 4.59620 4.62729 4.66024 4.76576 4.83444 4.87020 4.92841 4.97725 4.98998 5.04597 5.12013 5.15489 5.21237 5.22738 5.27151 5.35936 5.47755 5.49823 5.58447 5.75815 5.82914 5.96769 6.14241 6.41902 6.81664 7.12089 7.56028 8.21791 9.01492 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004635 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.001952 B = 6039.041517 C = 6681.689438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.029 4.029 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.310 1.310 6 H -0.276 1.276 7 C -0.225 4.225 8 H 0.050 0.950 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.130 4.130 12 C -0.111 4.111 13 C 0.159 3.841 14 H 0.048 0.952 15 C 0.147 3.853 16 H 0.042 0.958 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.089 3.911 21 N -0.593 5.593 22 C 0.575 3.425 23 O -0.530 6.530 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.232 4.232 27 C 0.000 4.000 28 O -0.164 6.164 29 H 0.262 0.738 30 H 0.027 0.973 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.153 0.847 45 H 0.181 0.819 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.827 -18.523 0.035 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.224 4.224 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.239 1.239 6 H -0.202 1.202 7 C -0.354 4.354 8 H 0.068 0.932 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.168 4.168 12 C -0.148 4.148 13 C 0.053 3.947 14 H 0.065 0.935 15 C 0.043 3.957 16 H 0.060 0.940 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.032 4.032 21 N -0.324 5.324 22 C 0.365 3.635 23 O -0.411 6.411 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.251 4.251 27 C -0.069 4.069 28 O -0.060 6.060 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.171 0.829 45 H 0.198 0.802 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 19.407 -17.966 -0.009 26.446 hybrid contribution -0.522 1.348 0.399 1.500 sum 18.885 -16.618 0.389 25.158 Atomic orbital electron populations 1.69913 1.07114 1.27177 1.56088 1.25825 0.95789 1.00717 1.00036 0.85801 0.77625 0.80172 0.77900 1.19337 1.23942 1.20221 1.18435 0.84152 0.92935 1.39871 0.93219 1.45052 1.05329 1.38604 1.45533 1.22212 0.93156 0.93668 0.92995 1.22779 0.95090 0.97833 1.01137 1.23042 0.96962 0.95045 0.99744 1.21680 0.88059 0.87745 0.97174 0.93470 1.21575 0.90646 0.89960 0.93566 0.94022 1.21876 1.02154 0.97773 0.93773 1.21543 0.99016 0.93539 1.01458 1.21793 0.99244 1.01495 0.93381 1.22360 1.04162 0.79171 0.97503 1.48112 1.32223 1.09481 1.42600 1.17182 0.79932 0.86530 0.79838 1.90861 1.69808 1.15019 1.65365 1.21917 1.02927 0.81326 1.08815 1.22184 0.94649 1.01447 0.96797 1.22161 1.05179 0.90766 1.06972 1.25477 0.87361 1.01537 0.92485 1.84181 1.46986 1.18740 1.56121 0.92895 0.95574 0.94375 0.93019 0.88400 0.88783 0.90455 0.92743 0.90620 0.92743 0.90156 0.87777 0.91281 0.86143 0.91379 0.82936 0.80189 0.72967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.42 13.97 21.65 0.30 -62.12 16 2 C -0.03 -1.76 5.46 84.86 0.46 -1.30 16 3 Si 0.95 50.55 25.02 68.60 1.72 52.27 16 4 H -0.27 -13.18 6.40 99.48 0.64 -12.55 16 5 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 6 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.22 -13.56 10.16 84.03 0.85 -12.70 16 8 H 0.05 3.26 7.48 -2.91 -0.02 3.24 16 9 N -0.62 -31.66 2.43 -667.43 -1.62 -33.28 16 10 C 0.10 4.71 6.27 86.79 0.54 5.25 16 11 C -0.13 -4.90 7.08 31.98 0.23 -4.67 16 12 C -0.11 -4.10 5.11 31.78 0.16 -3.93 16 13 C 0.16 7.02 2.28 45.34 0.10 7.13 16 14 H 0.05 2.44 5.83 -12.71 -0.07 2.37 16 15 C 0.15 5.62 2.71 44.98 0.12 5.74 16 16 H 0.04 1.88 7.38 -2.39 -0.02 1.86 16 17 C -0.12 -3.83 4.96 30.67 0.15 -3.68 16 18 C -0.12 -2.87 5.88 30.62 0.18 -2.69 16 19 C -0.12 -2.28 6.06 30.53 0.19 -2.10 16 20 C 0.09 2.00 6.16 86.22 0.53 2.54 16 21 N -0.59 -18.49 2.95 -800.54 -2.36 -20.86 16 22 C 0.57 18.89 7.22 86.44 0.62 19.51 16 23 O -0.53 -20.76 9.71 -4.34 -0.04 -20.80 16 24 C -0.10 -2.54 6.80 24.07 0.16 -2.38 16 25 C -0.13 -2.92 10.63 22.39 0.24 -2.68 16 26 C -0.23 -3.36 10.88 22.07 0.24 -3.12 16 27 C 0.00 0.00 12.08 67.11 0.81 0.81 16 28 O -0.16 -3.14 7.16 -5.05 -0.04 -3.17 16 29 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 30 H 0.03 1.30 2.47 -2.39 -0.01 1.29 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.09 3.53 5.56 -12.77 -0.07 3.46 16 35 H 0.08 2.55 5.18 -2.39 -0.01 2.54 16 36 H 0.05 2.11 7.98 -2.39 -0.02 2.09 16 37 H 0.08 2.30 5.51 -2.38 -0.01 2.29 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.12 2.32 4.03 -37.37 -0.15 2.17 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -77.01 340.65 4.22 -72.78 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.67 Total: 13.47 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.60 Total: 1.71 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.68 Total: -116.26 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.08 Total: -23.97 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.72 Total: 52.27 kcal Total: -77.01 4.22 -72.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025192038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.062 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds