Wall clock time and date at job start Tue Mar 31 2020 12:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00264 * 2 1 4 4 H 1.48502 * 109.47002 * 270.00124 * 3 2 1 5 5 H 1.48502 * 109.46997 * 29.99697 * 3 2 1 6 6 H 1.48498 * 109.47262 * 149.99809 * 3 2 1 7 7 C 1.38819 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99883 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.47417 * 125.64726 * 321.29997 * 9 7 2 11 11 C 1.54914 * 104.83348 * 155.89317 * 10 9 7 12 12 C 1.55154 * 101.57575 * 37.01162 * 11 10 9 13 13 C 1.47013 * 125.64690 * 141.32632 * 9 7 2 14 14 H 1.08997 * 110.01779 * 300.52664 * 13 9 7 15 15 C 1.53003 * 109.88316 * 61.62155 * 13 9 7 16 16 H 1.09004 * 109.58495 * 165.75245 * 15 13 9 17 17 C 1.53190 * 109.58518 * 45.32743 * 15 13 9 18 18 C 1.53046 * 109.31134 * 185.58051 * 17 15 13 19 19 C 1.53034 * 109.54037 * 61.36155 * 18 17 15 20 20 C 1.53195 * 109.31314 * 298.63501 * 19 18 17 21 21 N 1.46922 * 109.58706 * 286.03477 * 15 13 9 22 22 C 1.34781 * 120.62884 * 353.37734 * 21 15 13 23 23 O 1.21611 * 120.00167 * 6.44234 * 22 21 15 24 24 C 1.47387 * 119.99681 * 186.44884 * 22 21 15 25 25 C 1.47011 * 127.18832 * 211.45508 * 24 22 21 26 26 C 1.34179 * 105.95295 * 179.83308 * 25 24 22 27 27 O 1.34207 * 109.12252 * 0.43477 * 26 25 24 28 28 C 1.33650 * 110.91222 * 359.71079 * 27 26 25 29 29 H 0.96997 * 119.99649 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37041 * 37.05695 * 10 9 7 31 31 H 1.08999 * 110.46209 * 274.78060 * 10 9 7 32 32 H 1.08999 * 110.99948 * 278.93931 * 11 10 9 33 33 H 1.08995 * 111.00348 * 155.08638 * 11 10 9 34 34 H 1.09007 * 110.71449 * 206.13839 * 12 11 10 35 35 H 1.08997 * 110.72672 * 82.86426 * 12 11 10 36 36 H 1.08997 * 109.49781 * 305.52417 * 17 15 13 37 37 H 1.08992 * 109.50398 * 65.62838 * 17 15 13 38 38 H 1.09005 * 109.45965 * 301.34303 * 18 17 15 39 39 H 1.08998 * 109.44834 * 181.37743 * 18 17 15 40 40 H 1.09003 * 109.50051 * 178.68336 * 19 18 17 41 41 H 1.08999 * 109.49987 * 58.58787 * 19 18 17 42 42 H 1.09001 * 109.59183 * 294.84894 * 20 19 18 43 43 H 1.09007 * 109.70557 * 174.48943 * 20 19 18 44 44 H 1.08006 * 127.02813 * 359.97438 * 25 24 22 45 45 H 1.07999 * 125.44005 * 180.14822 * 26 25 24 46 46 H 1.07997 * 125.80733 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3882 0.0005 10 6 0.0860 -2.6645 0.7491 11 6 -0.5952 -3.8207 -0.0248 12 6 0.6296 -4.6666 -0.4626 13 6 1.7052 -3.5967 -0.7456 14 1 1.7408 -3.3802 -1.8132 15 6 3.0717 -4.0941 -0.2699 16 1 3.2367 -5.1094 -0.6307 17 6 3.1204 -4.0757 1.2611 18 6 4.5319 -4.4402 1.7270 19 6 5.5282 -3.4054 1.1995 20 6 5.5068 -3.4162 -0.3322 21 7 4.1250 -3.2102 -0.7873 22 6 3.8295 -2.2292 -1.6630 23 8 2.6698 -1.9927 -1.9426 24 6 4.9118 -1.4431 -2.2818 25 6 4.8590 -0.0355 -2.7026 26 6 6.0713 0.2451 -3.2045 27 8 6.8404 -0.8526 -3.1359 28 6 6.1700 -1.8714 -2.5893 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5562 -1.7839 0.7580 31 1 0.3174 -2.9747 1.7681 32 1 -1.1394 -3.4438 -0.8908 33 1 -1.2527 -4.3942 0.6286 34 1 0.4034 -5.2342 -1.3653 35 1 0.9476 -5.3299 0.3417 36 1 2.8645 -3.0793 1.6213 37 1 2.4084 -4.8000 1.6566 38 1 4.7967 -5.4265 1.3458 39 1 4.5628 -4.4517 2.8165 40 1 6.5300 -3.6526 1.5511 41 1 5.2497 -2.4152 1.5602 42 1 5.8719 -4.3767 -0.6961 43 1 6.1405 -2.6159 -0.7144 44 1 4.0171 0.6363 -2.6218 45 1 6.3777 1.2004 -3.6045 46 1 6.5581 -2.8649 -2.4202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025198419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:50 Heat of formation + Delta-G solvation = 65.375997 kcal Electronic energy + Delta-G solvation = -29790.994383 eV Core-core repulsion = 26071.483668 eV Total energy + Delta-G solvation = -3719.510715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21437 -40.00977 -36.80624 -36.46411 -32.81585 -32.42958 -31.99179 -30.98122 -29.23854 -29.03624 -27.18239 -24.88924 -24.13669 -23.10447 -22.13962 -21.11517 -20.19357 -19.99518 -19.45785 -18.57156 -17.18488 -16.59217 -15.85663 -15.78750 -15.45336 -15.00503 -14.40700 -14.27565 -14.06057 -13.80172 -13.62774 -13.17214 -13.00141 -12.68839 -12.57718 -12.47448 -12.00274 -11.96541 -11.70976 -11.62359 -11.08938 -10.92998 -10.83316 -10.73790 -10.56985 -10.45275 -10.17716 -10.01354 -9.92041 -9.75331 -9.60224 -9.40521 -9.34681 -8.48400 -8.23908 -8.03195 -7.60937 -6.12915 -5.46511 -3.01371 1.80483 2.52840 3.19941 3.41485 3.47967 3.49145 3.61734 4.08995 4.61489 4.85223 5.05742 5.10394 5.22058 5.29548 5.43449 5.52030 5.61579 5.67512 5.72463 5.74457 5.85647 5.88844 5.91895 6.02975 6.08792 6.13079 6.16428 6.21652 6.25920 6.35489 6.44671 6.47818 6.57231 6.60550 6.67296 6.78237 6.89005 6.93135 7.16145 7.27312 7.32476 7.49448 7.67052 7.89082 8.06688 8.27487 8.71387 9.24979 9.39344 9.99433 10.82977 11.48821 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.008041 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.686950 B = 3481.330910 C = 4878.517258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.162 4.162 8 H 0.060 0.940 9 N -0.566 5.566 10 C 0.123 3.877 11 C -0.129 4.129 12 C -0.134 4.134 13 C 0.141 3.859 14 H 0.086 0.914 15 C 0.147 3.853 16 H 0.050 0.950 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.132 4.132 20 C 0.100 3.900 21 N -0.605 5.605 22 C 0.534 3.466 23 O -0.429 6.429 24 C -0.196 4.196 25 C -0.166 4.166 26 C -0.053 4.053 27 O -0.184 6.184 28 C -0.024 4.024 29 H 0.249 0.751 30 H 0.101 0.899 31 H -0.004 1.004 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.202 0.798 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -7.700 -1.550 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.196 4.196 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.292 4.292 8 H 0.078 0.922 9 N -0.289 5.289 10 C -0.002 4.002 11 C -0.168 4.168 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.103 0.897 15 C 0.042 3.958 16 H 0.068 0.932 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.171 4.171 20 C -0.023 4.023 21 N -0.341 5.341 22 C 0.322 3.678 23 O -0.300 6.300 24 C -0.201 4.201 25 C -0.185 4.185 26 C -0.119 4.119 27 O -0.080 6.080 28 C -0.092 4.092 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.013 0.987 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.173 0.827 45 H 0.219 0.781 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.384 -7.319 -1.820 13.656 hybrid contribution 0.390 0.962 0.234 1.065 sum 11.774 -6.357 -1.586 13.474 Atomic orbital electron populations 1.69649 1.05269 1.24583 1.54822 1.25346 0.95256 0.97637 1.01379 0.86507 0.79242 0.84831 0.77614 1.21407 1.22084 1.20749 1.18677 0.89675 0.81749 1.39083 0.92224 1.44118 1.27047 1.08018 1.49712 1.21903 0.90299 0.97170 0.90796 1.22712 0.96257 0.97735 1.00047 1.22703 0.97607 0.97547 0.99401 1.21853 0.88580 0.87085 0.99100 0.89658 1.21868 0.89692 0.90905 0.93324 0.93165 1.21913 0.94609 1.03980 0.95840 1.21516 0.96288 0.97813 0.99786 1.21873 0.98866 1.00727 0.95617 1.21885 0.84654 1.00874 0.94928 1.47545 1.07298 1.33741 1.45559 1.16964 0.87457 0.80943 0.82445 1.90969 1.17855 1.62883 1.58322 1.21911 0.95149 0.95800 1.07226 1.22938 0.98534 0.95125 1.01939 1.23796 0.90682 0.90706 1.06719 1.83715 1.41634 1.18600 1.64077 1.24464 0.91432 0.92654 1.00688 0.94011 0.88169 0.98671 0.92163 0.93375 0.92936 0.92776 0.88951 0.92322 0.92962 0.92661 0.91931 0.91290 0.92610 0.89803 0.82699 0.78092 0.77560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 10.90 55.49 0.60 -26.17 16 2 C 0.00 0.05 5.44 -17.43 -0.09 -0.05 16 3 Si 0.89 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.16 -4.42 5.76 -15.05 -0.09 -4.51 16 8 H 0.06 1.63 5.15 -52.49 -0.27 1.36 16 9 N -0.57 -14.13 1.78 -162.58 -0.29 -14.42 16 10 C 0.12 3.00 6.84 -2.53 -0.02 2.98 16 11 C -0.13 -2.65 7.09 -24.58 -0.17 -2.82 16 12 C -0.13 -2.50 6.33 -24.90 -0.16 -2.66 16 13 C 0.14 3.03 2.30 -66.95 -0.15 2.87 16 14 H 0.09 2.11 5.41 -54.71 -0.30 1.81 16 15 C 0.15 2.67 2.54 -67.60 -0.17 2.50 16 16 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 17 C -0.13 -2.17 4.95 -26.61 -0.13 -2.30 16 18 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16 19 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 20 C 0.10 1.37 5.28 -3.71 -0.02 1.35 16 21 N -0.60 -10.76 2.58 -166.48 -0.43 -11.19 16 22 C 0.53 11.03 5.18 -12.53 -0.06 10.96 16 23 O -0.43 -10.74 9.66 5.27 0.05 -10.69 16 24 C -0.20 -3.54 5.66 -103.28 -0.58 -4.12 16 25 C -0.17 -2.97 11.13 -37.46 -0.42 -3.38 16 26 C -0.05 -0.74 12.03 29.30 0.35 -0.39 16 27 O -0.18 -2.54 10.52 7.68 0.08 -2.46 16 28 C -0.02 -0.33 9.71 30.08 0.29 -0.04 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.10 2.80 5.51 -51.93 -0.29 2.51 16 31 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 36 H 0.09 1.98 6.51 -51.93 -0.34 1.64 16 37 H 0.06 0.98 6.99 -51.93 -0.36 0.62 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.09 4.38 -51.93 -0.23 0.86 16 44 H 0.16 3.07 8.06 -52.48 -0.42 2.65 16 45 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 46 H 0.21 2.13 6.63 -52.49 -0.35 1.78 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -32.22 341.57 -8.29 -40.51 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.68 Total: 5.10 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.75 Total: -3.32 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.11 Total: -51.77 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.13 Total: -13.16 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.22 -8.29 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.886 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds