Wall clock time and date at job start Tue Mar 31 2020 12:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00264 * 2 1 4 4 H 1.48502 * 109.47002 * 270.00124 * 3 2 1 5 5 H 1.48502 * 109.46997 * 29.99697 * 3 2 1 6 6 H 1.48498 * 109.47262 * 149.99809 * 3 2 1 7 7 C 1.38819 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99883 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.47417 * 125.64726 * 321.29997 * 9 7 2 11 11 C 1.54914 * 104.83348 * 155.89317 * 10 9 7 12 12 C 1.55154 * 101.57575 * 37.01162 * 11 10 9 13 13 C 1.47013 * 125.64690 * 141.32632 * 9 7 2 14 14 H 1.08997 * 110.01779 * 300.52664 * 13 9 7 15 15 C 1.53003 * 109.88316 * 61.62155 * 13 9 7 16 16 H 1.09004 * 109.58495 * 165.75245 * 15 13 9 17 17 C 1.53190 * 109.58518 * 45.32743 * 15 13 9 18 18 C 1.53046 * 109.31134 * 185.58051 * 17 15 13 19 19 C 1.53034 * 109.54037 * 61.36155 * 18 17 15 20 20 C 1.53195 * 109.31314 * 298.63501 * 19 18 17 21 21 N 1.46922 * 109.58706 * 286.03477 * 15 13 9 22 22 C 1.34781 * 120.62884 * 353.37734 * 21 15 13 23 23 O 1.21611 * 120.00167 * 6.44234 * 22 21 15 24 24 C 1.47387 * 119.99681 * 186.44884 * 22 21 15 25 25 C 1.47011 * 127.18832 * 211.45508 * 24 22 21 26 26 C 1.34179 * 105.95295 * 179.83308 * 25 24 22 27 27 O 1.34207 * 109.12252 * 0.43477 * 26 25 24 28 28 C 1.33650 * 110.91222 * 359.71079 * 27 26 25 29 29 H 0.96997 * 119.99649 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.37041 * 37.05695 * 10 9 7 31 31 H 1.08999 * 110.46209 * 274.78060 * 10 9 7 32 32 H 1.08999 * 110.99948 * 278.93931 * 11 10 9 33 33 H 1.08995 * 111.00348 * 155.08638 * 11 10 9 34 34 H 1.09007 * 110.71449 * 206.13839 * 12 11 10 35 35 H 1.08997 * 110.72672 * 82.86426 * 12 11 10 36 36 H 1.08997 * 109.49781 * 305.52417 * 17 15 13 37 37 H 1.08992 * 109.50398 * 65.62838 * 17 15 13 38 38 H 1.09005 * 109.45965 * 301.34303 * 18 17 15 39 39 H 1.08998 * 109.44834 * 181.37743 * 18 17 15 40 40 H 1.09003 * 109.50051 * 178.68336 * 19 18 17 41 41 H 1.08999 * 109.49987 * 58.58787 * 19 18 17 42 42 H 1.09001 * 109.59183 * 294.84894 * 20 19 18 43 43 H 1.09007 * 109.70557 * 174.48943 * 20 19 18 44 44 H 1.08006 * 127.02813 * 359.97438 * 25 24 22 45 45 H 1.07999 * 125.44005 * 180.14822 * 26 25 24 46 46 H 1.07997 * 125.80733 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3882 0.0005 10 6 0.0860 -2.6645 0.7491 11 6 -0.5952 -3.8207 -0.0248 12 6 0.6296 -4.6666 -0.4626 13 6 1.7052 -3.5967 -0.7456 14 1 1.7408 -3.3802 -1.8132 15 6 3.0717 -4.0941 -0.2699 16 1 3.2367 -5.1094 -0.6307 17 6 3.1204 -4.0757 1.2611 18 6 4.5319 -4.4402 1.7270 19 6 5.5282 -3.4054 1.1995 20 6 5.5068 -3.4162 -0.3322 21 7 4.1250 -3.2102 -0.7873 22 6 3.8295 -2.2292 -1.6630 23 8 2.6698 -1.9927 -1.9426 24 6 4.9118 -1.4431 -2.2818 25 6 4.8590 -0.0355 -2.7026 26 6 6.0713 0.2451 -3.2045 27 8 6.8404 -0.8526 -3.1359 28 6 6.1700 -1.8714 -2.5893 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5562 -1.7839 0.7580 31 1 0.3174 -2.9747 1.7681 32 1 -1.1394 -3.4438 -0.8908 33 1 -1.2527 -4.3942 0.6286 34 1 0.4034 -5.2342 -1.3653 35 1 0.9476 -5.3299 0.3417 36 1 2.8645 -3.0793 1.6213 37 1 2.4084 -4.8000 1.6566 38 1 4.7967 -5.4265 1.3458 39 1 4.5628 -4.4517 2.8165 40 1 6.5300 -3.6526 1.5511 41 1 5.2497 -2.4152 1.5602 42 1 5.8719 -4.3767 -0.6961 43 1 6.1405 -2.6159 -0.7144 44 1 4.0171 0.6363 -2.6218 45 1 6.3777 1.2004 -3.6045 46 1 6.5581 -2.8649 -2.4202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025198419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:49 Heat of formation + Delta-G solvation = 45.089183 kcal Electronic energy + Delta-G solvation = -29791.874085 eV Core-core repulsion = 26071.483668 eV Total energy + Delta-G solvation = -3720.390417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.42954 -41.52122 -38.48325 -37.90181 -34.44232 -34.14782 -33.28966 -32.37935 -30.96581 -30.47312 -28.72805 -26.57720 -25.84163 -24.41624 -23.50413 -22.37419 -21.82422 -21.41653 -21.00421 -19.98372 -18.85310 -18.11794 -17.52167 -17.06883 -16.86806 -16.47166 -16.02631 -15.80123 -15.53781 -15.43070 -14.87851 -14.60191 -14.44295 -14.14021 -13.95910 -13.88603 -13.73696 -13.43646 -13.35356 -13.10033 -12.85255 -12.76910 -12.61066 -12.31271 -12.06540 -11.89899 -11.78949 -11.62297 -11.53283 -11.38399 -11.25761 -11.11844 -10.75168 -10.32151 -9.69893 -9.57582 -9.12012 -8.14670 -7.53624 -5.14028 0.60792 1.21615 1.32409 1.35315 1.41267 2.03844 2.25492 2.53673 2.64691 3.48824 3.71280 3.83488 3.92851 3.99786 4.03555 4.13899 4.20585 4.29303 4.34053 4.41791 4.43930 4.54131 4.57150 4.67411 4.71997 4.80277 4.82677 4.94184 4.99190 5.05861 5.08996 5.14986 5.20200 5.24211 5.28328 5.33534 5.34669 5.40166 5.61653 5.68450 5.74094 5.83931 6.02134 6.06693 6.11857 6.63576 6.83133 7.32973 7.73687 7.98873 8.77473 9.38040 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.008041 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.686950 B = 3481.330910 C = 4878.517258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.068 4.068 3 Si 0.934 3.066 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.132 4.132 8 H 0.055 0.945 9 N -0.577 5.577 10 C 0.120 3.880 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.134 3.866 14 H 0.052 0.948 15 C 0.148 3.852 16 H 0.085 0.915 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.131 4.131 20 C 0.092 3.908 21 N -0.604 5.604 22 C 0.539 3.461 23 O -0.497 6.497 24 C -0.247 4.247 25 C -0.218 4.218 26 C -0.018 4.018 27 O -0.172 6.172 28 C 0.021 3.979 29 H 0.237 0.763 30 H 0.060 0.940 31 H -0.004 1.004 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.031 0.969 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.245 0.755 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.289 -11.074 -1.743 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.260 4.260 3 Si 0.765 3.235 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.263 4.263 8 H 0.072 0.928 9 N -0.300 5.300 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.028 3.972 14 H 0.069 0.931 15 C 0.044 3.956 16 H 0.103 0.897 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.169 4.169 20 C -0.029 4.029 21 N -0.339 5.339 22 C 0.329 3.671 23 O -0.373 6.373 24 C -0.251 4.251 25 C -0.238 4.238 26 C -0.084 4.084 27 O -0.067 6.067 28 C -0.048 4.048 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.261 0.739 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 15.921 -10.731 -1.995 19.303 hybrid contribution -0.792 1.868 0.214 2.040 sum 15.129 -8.864 -1.781 17.624 Atomic orbital electron populations 1.69849 1.06194 1.23830 1.59109 1.25892 0.95983 1.00179 1.03981 0.85722 0.78273 0.82277 0.77203 1.21743 1.22788 1.20098 1.18712 0.89413 0.82647 1.35562 0.92750 1.44286 1.26954 1.08593 1.50201 1.21794 0.90017 0.97211 0.91563 1.22589 0.97196 0.96886 0.99185 1.22670 0.95273 0.96813 1.01219 1.21871 0.91815 0.86512 0.96999 0.93103 1.21774 0.87849 0.92078 0.93931 0.89749 1.21785 0.97590 1.01354 0.94987 1.21485 0.93559 0.99232 1.00428 1.21877 1.00837 0.98736 0.95425 1.22274 0.82113 1.03410 0.95122 1.47752 1.09287 1.32554 1.44283 1.17527 0.87477 0.80646 0.81500 1.90970 1.20301 1.64768 1.61218 1.21838 0.96638 0.96206 1.10433 1.22859 0.99637 0.95579 1.05679 1.24370 0.88750 0.91685 1.03564 1.83792 1.41105 1.18532 1.63244 1.25075 0.89273 0.93620 0.96795 0.95338 0.92169 0.98615 0.94422 0.90196 0.90901 0.89985 0.94009 0.91591 0.89808 0.91886 0.88029 0.95044 0.88118 0.89076 0.86224 0.73887 0.73197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.84 10.90 21.65 0.24 -60.61 16 2 C -0.07 -4.19 5.44 84.86 0.46 -3.73 16 3 Si 0.93 49.83 29.55 68.60 2.03 51.86 16 4 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 5 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 6 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.13 -7.65 5.76 84.03 0.48 -7.17 16 8 H 0.06 3.15 5.15 -2.91 -0.02 3.13 16 9 N -0.58 -30.25 1.78 -668.28 -1.19 -31.43 16 10 C 0.12 6.11 6.84 86.86 0.59 6.71 16 11 C -0.12 -4.97 7.09 31.99 0.23 -4.75 16 12 C -0.12 -4.35 6.33 31.78 0.20 -4.15 16 13 C 0.13 5.81 2.30 45.34 0.10 5.92 16 14 H 0.05 2.62 5.41 -46.38 -0.25 2.37 16 15 C 0.15 5.06 2.54 44.98 0.11 5.17 16 16 H 0.08 2.38 8.11 -2.39 -0.02 2.36 16 17 C -0.12 -3.87 4.95 30.67 0.15 -3.72 16 18 C -0.11 -2.56 5.88 30.62 0.18 -2.38 16 19 C -0.13 -3.01 6.08 30.67 0.19 -2.82 16 20 C 0.09 2.09 5.28 86.36 0.46 2.54 16 21 N -0.60 -20.30 2.58 -798.89 -2.06 -22.36 16 22 C 0.54 22.46 5.18 86.65 0.45 22.91 16 23 O -0.50 -26.27 9.66 -4.07 -0.04 -26.31 16 24 C -0.25 -8.68 5.66 -18.99 -0.11 -8.79 16 25 C -0.22 -7.88 11.13 23.65 0.26 -7.61 16 26 C -0.02 -0.45 12.03 66.89 0.80 0.36 16 27 O -0.17 -3.99 10.52 4.56 0.05 -3.94 16 28 C 0.02 0.51 9.71 67.39 0.65 1.16 16 29 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.06 3.63 5.51 -2.39 -0.01 3.62 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.08 2.49 6.66 -2.39 -0.02 2.48 16 36 H 0.04 1.80 6.51 -2.39 -0.02 1.79 16 37 H 0.07 2.02 6.99 -2.39 -0.02 2.01 16 38 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.92 4.38 -2.38 -0.01 1.91 16 44 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 45 H 0.25 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.25 3.53 6.63 -2.91 -0.02 3.51 16 Total: -1.00 -81.64 341.57 5.00 -76.65 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.75 Total: 16.49 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.22 Total: -0.34 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -3.01 Total: -114.40 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: 0.01 Total: -30.25 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -81.64 5.00 -76.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.736 kcal (2) G-P(sol) polarization free energy of solvation -81.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds