Wall clock time and date at job start Tue Mar 31 2020 12:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47025 * 269.99641 * 3 2 1 5 5 H 1.48502 * 109.46939 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.46909 * 149.99874 * 3 2 1 7 7 C 1.38812 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64993 * 342.64123 * 9 7 2 11 11 C 1.54909 * 104.93055 * 204.09662 * 10 9 7 12 12 C 1.55275 * 101.52379 * 323.12663 * 11 10 9 13 13 C 1.47028 * 125.64496 * 162.66289 * 9 7 2 14 14 H 1.09003 * 109.88250 * 59.34866 * 13 9 7 15 15 C 1.52995 * 109.88566 * 298.33551 * 13 9 7 16 16 H 1.09007 * 109.58399 * 48.27613 * 15 13 9 17 17 C 1.53189 * 109.58759 * 287.85289 * 15 13 9 18 18 C 1.53045 * 109.31403 * 185.57826 * 17 15 13 19 19 C 1.53037 * 109.53873 * 61.35772 * 18 17 15 20 20 C 1.53193 * 109.31508 * 298.63965 * 19 18 17 21 21 N 1.46921 * 109.58654 * 168.55752 * 15 13 9 22 22 C 1.34777 * 120.63423 * 353.41905 * 21 15 13 23 23 O 1.21614 * 119.99407 * 5.88275 * 22 21 15 24 24 C 1.47372 * 120.00356 * 185.87662 * 22 21 15 25 25 C 1.47024 * 127.19413 * 214.51864 * 24 22 21 26 26 C 1.34180 * 105.95119 * 179.83457 * 25 24 22 27 27 O 1.34212 * 109.12616 * 0.43104 * 26 25 24 28 28 C 1.33650 * 110.90816 * 359.71139 * 27 26 25 29 29 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.36471 * 322.98670 * 10 9 7 31 31 H 1.08998 * 110.36915 * 85.19876 * 10 9 7 32 32 H 1.09000 * 111.00680 * 81.11723 * 11 10 9 33 33 H 1.09003 * 111.00378 * 204.97284 * 11 10 9 34 34 H 1.09006 * 110.62085 * 277.00510 * 12 11 10 35 35 H 1.09000 * 110.90805 * 153.85153 * 12 11 10 36 36 H 1.09001 * 109.49719 * 305.52697 * 17 15 13 37 37 H 1.08993 * 109.50301 * 65.62380 * 17 15 13 38 38 H 1.09000 * 109.45728 * 301.34261 * 18 17 15 39 39 H 1.08999 * 109.46161 * 181.38261 * 18 17 15 40 40 H 1.09000 * 109.49675 * 178.68455 * 19 18 17 41 41 H 1.09005 * 109.49518 * 58.59039 * 19 18 17 42 42 H 1.08995 * 109.58436 * 294.84417 * 20 19 18 43 43 H 1.09000 * 109.70539 * 174.48894 * 20 19 18 44 44 H 1.07996 * 127.01943 * 359.97438 * 25 24 22 45 45 H 1.08004 * 125.43007 * 180.14591 * 26 25 24 46 46 H 1.08006 * 125.79917 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0944 -2.5604 0.3574 11 6 -0.2179 -4.0397 0.8001 12 6 0.7578 -4.7405 -0.1837 13 6 1.8850 -3.7004 -0.3550 14 1 2.7174 -3.9401 0.3066 15 6 2.3632 -3.6859 -1.8082 16 1 2.9710 -2.7983 -1.9840 17 6 1.1527 -3.6771 -2.7471 18 6 1.6339 -3.8031 -4.1945 19 6 2.3748 -5.1300 -4.3739 20 6 3.5992 -5.1552 -3.4534 21 7 3.1610 -4.8902 -2.0763 22 6 3.4844 -5.7360 -1.0780 23 8 3.0274 -5.5648 0.0359 24 6 4.3915 -6.8683 -1.3364 25 6 4.3426 -8.2040 -0.7239 26 6 5.3576 -8.8951 -1.2648 27 8 6.0141 -8.1071 -2.1305 28 6 5.4558 -6.8943 -2.1894 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3626 -1.8952 1.1782 31 1 -0.7290 -2.3691 -0.5079 32 1 0.1100 -4.1675 1.8318 33 1 -1.2369 -4.4033 0.6678 34 1 0.2666 -4.9373 -1.1366 35 1 1.1469 -5.6636 0.2459 36 1 0.4997 -4.5160 -2.5066 37 1 0.6050 -2.7427 -2.6258 38 1 2.3065 -2.9773 -4.4267 39 1 0.7761 -3.7724 -4.8663 40 1 2.6969 -5.2296 -5.4105 41 1 1.7103 -5.9553 -4.1180 42 1 4.3070 -4.3875 -3.7659 43 1 4.0762 -6.1340 -3.5031 44 1 3.6331 -8.5574 0.0096 45 1 5.6092 -9.9202 -1.0361 46 1 5.7906 -6.0740 -2.8071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025198421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:53 Heat of formation + Delta-G solvation = 47.514802 kcal Electronic energy + Delta-G solvation = -28719.150928 eV Core-core repulsion = 24998.865693 eV Total energy + Delta-G solvation = -3720.285235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64330 -40.32020 -37.21212 -36.66765 -33.32539 -32.41470 -32.33822 -31.16316 -29.64063 -29.14581 -27.13261 -24.98214 -24.30854 -23.42946 -22.43012 -21.57730 -20.73792 -19.98701 -19.64169 -18.56074 -17.38053 -16.95853 -16.24189 -15.90274 -15.39331 -15.12802 -14.91402 -14.51606 -14.34746 -14.02861 -13.70182 -13.64264 -13.25150 -13.00900 -12.92478 -12.82168 -12.32711 -12.01602 -11.81670 -11.52735 -11.23451 -11.18150 -10.92049 -10.81642 -10.63583 -10.51286 -10.26754 -9.99031 -9.95255 -9.86728 -9.57643 -9.44914 -9.38323 -8.82560 -8.65858 -8.43826 -7.99883 -6.52633 -5.65067 -2.98926 1.39166 2.05699 2.80967 3.17729 3.42964 3.44826 3.49450 3.50923 4.47126 4.58318 4.64872 4.86059 4.90947 5.02051 5.16213 5.33201 5.41230 5.52583 5.54293 5.57251 5.58265 5.75000 5.81946 5.84492 5.93389 5.98654 6.07842 6.12602 6.16958 6.19079 6.28581 6.41314 6.51246 6.60746 6.65988 6.79948 6.84883 6.90596 7.03234 7.11515 7.13444 7.62769 7.68339 7.76599 7.81224 7.92046 8.40157 8.62106 9.32593 9.95157 10.68027 11.47369 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004326 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.934254 B = 6471.533301 C = 6660.653630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.070 0.930 9 N -0.595 5.595 10 C 0.176 3.824 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.155 3.845 14 H 0.085 0.915 15 C 0.138 3.862 16 H 0.076 0.924 17 C -0.129 4.129 18 C -0.120 4.120 19 C -0.131 4.131 20 C 0.095 3.905 21 N -0.598 5.598 22 C 0.569 3.431 23 O -0.504 6.504 24 C -0.218 4.218 25 C -0.168 4.168 26 C -0.045 4.045 27 O -0.179 6.179 28 C 0.002 3.998 29 H 0.251 0.749 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.206 0.794 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 -16.762 -8.839 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.088 0.912 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.189 4.189 12 C -0.161 4.161 13 C 0.048 3.952 14 H 0.102 0.898 15 C 0.034 3.966 16 H 0.094 0.906 17 C -0.167 4.167 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.029 4.029 21 N -0.332 5.332 22 C 0.358 3.642 23 O -0.381 6.381 24 C -0.223 4.223 25 C -0.188 4.188 26 C -0.111 4.111 27 O -0.075 6.075 28 C -0.068 4.068 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.175 0.825 45 H 0.222 0.778 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.824 -16.503 -8.369 20.090 hybrid contribution 0.244 1.081 -0.181 1.123 sum 8.068 -15.422 -8.550 19.392 Atomic orbital electron populations 1.69948 1.04913 1.24894 1.56490 1.24903 0.95554 0.97512 1.02042 0.86253 0.78862 0.84029 0.77474 1.21701 1.21792 1.20728 1.18937 0.90182 0.82514 1.43599 0.91244 1.44697 1.07928 1.02372 1.76948 1.21306 0.85634 0.89824 0.98093 1.23017 0.97365 0.99787 0.98727 1.22950 0.96061 0.98482 0.98603 1.21946 0.96735 0.85724 0.90756 0.89775 1.22225 0.90902 0.84272 0.99172 0.90622 1.22065 0.98221 1.03534 0.92839 1.21551 0.99776 0.96564 0.97916 1.21878 0.97325 0.98989 0.98695 1.22008 0.97074 1.01536 0.82256 1.48166 1.53460 1.24720 1.06808 1.17335 0.80810 0.81124 0.84951 1.90787 1.52650 1.71140 1.23524 1.21794 1.00813 0.96899 1.02764 1.22791 1.00961 0.92162 1.02891 1.23889 0.95269 0.97243 0.94680 1.83776 1.50141 1.21263 1.52288 1.24587 0.94829 0.86839 1.00522 0.93885 0.92216 0.95907 0.92751 0.93167 0.92415 0.90818 0.91418 0.89578 0.92061 0.92282 0.91342 0.91756 0.91543 0.89770 0.82538 0.77751 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.69 55.49 0.59 -26.44 16 2 C 0.00 -0.09 5.46 -17.43 -0.10 -0.19 16 3 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.26 9.59 -15.06 -0.14 -6.41 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.59 -15.45 3.03 -162.58 -0.49 -15.94 16 10 C 0.18 4.48 5.37 -2.53 -0.01 4.46 16 11 C -0.15 -3.20 7.10 -24.52 -0.17 -3.37 16 12 C -0.12 -2.52 5.37 -24.83 -0.13 -2.65 16 13 C 0.16 3.45 2.29 -66.95 -0.15 3.29 16 14 H 0.09 2.09 5.43 -54.67 -0.30 1.79 16 15 C 0.14 2.63 2.76 -67.61 -0.19 2.44 16 16 H 0.08 1.60 7.67 -51.93 -0.40 1.20 16 17 C -0.13 -2.27 4.92 -26.61 -0.13 -2.40 16 18 C -0.12 -1.65 5.88 -26.69 -0.16 -1.81 16 19 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 20 C 0.09 1.07 5.35 -3.71 -0.02 1.05 16 21 N -0.60 -9.26 2.97 -166.50 -0.49 -9.75 16 22 C 0.57 9.40 7.32 -12.54 -0.09 9.31 16 23 O -0.50 -10.09 10.24 5.27 0.05 -10.04 16 24 C -0.22 -2.86 5.58 -103.28 -0.58 -3.44 16 25 C -0.17 -1.92 11.14 -37.45 -0.42 -2.34 16 26 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 27 O -0.18 -1.77 10.52 7.67 0.08 -1.69 16 28 C 0.00 0.02 9.71 30.08 0.29 0.31 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.06 1.68 7.13 -51.93 -0.37 1.31 16 31 H 0.02 0.62 7.99 -51.93 -0.42 0.20 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.12 4.86 -51.93 -0.25 0.87 16 35 H 0.07 1.51 5.97 -51.93 -0.31 1.20 16 36 H 0.07 1.20 5.36 -51.93 -0.28 0.92 16 37 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.79 4.51 -51.93 -0.23 0.56 16 44 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 45 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.21 1.57 6.87 -52.48 -0.36 1.21 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -32.55 347.46 -8.55 -41.09 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.69 Total: 3.68 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.81 Total: -3.41 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.39 Total: -52.13 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.13 Total: -11.72 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.55 -8.55 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.610 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds