Wall clock time and date at job start Tue Mar 31 2020 12:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47025 * 269.99641 * 3 2 1 5 5 H 1.48502 * 109.46939 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.46909 * 149.99874 * 3 2 1 7 7 C 1.38812 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99617 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64993 * 342.64123 * 9 7 2 11 11 C 1.54909 * 104.93055 * 204.09662 * 10 9 7 12 12 C 1.55275 * 101.52379 * 323.12663 * 11 10 9 13 13 C 1.47028 * 125.64496 * 162.66289 * 9 7 2 14 14 H 1.09003 * 109.88250 * 59.34866 * 13 9 7 15 15 C 1.52995 * 109.88566 * 298.33551 * 13 9 7 16 16 H 1.09007 * 109.58399 * 48.27613 * 15 13 9 17 17 C 1.53189 * 109.58759 * 287.85289 * 15 13 9 18 18 C 1.53045 * 109.31403 * 185.57826 * 17 15 13 19 19 C 1.53037 * 109.53873 * 61.35772 * 18 17 15 20 20 C 1.53193 * 109.31508 * 298.63965 * 19 18 17 21 21 N 1.46921 * 109.58654 * 168.55752 * 15 13 9 22 22 C 1.34777 * 120.63423 * 353.41905 * 21 15 13 23 23 O 1.21614 * 119.99407 * 5.88275 * 22 21 15 24 24 C 1.47372 * 120.00356 * 185.87662 * 22 21 15 25 25 C 1.47024 * 127.19413 * 214.51864 * 24 22 21 26 26 C 1.34180 * 105.95119 * 179.83457 * 25 24 22 27 27 O 1.34212 * 109.12616 * 0.43104 * 26 25 24 28 28 C 1.33650 * 110.90816 * 359.71139 * 27 26 25 29 29 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.36471 * 322.98670 * 10 9 7 31 31 H 1.08998 * 110.36915 * 85.19876 * 10 9 7 32 32 H 1.09000 * 111.00680 * 81.11723 * 11 10 9 33 33 H 1.09003 * 111.00378 * 204.97284 * 11 10 9 34 34 H 1.09006 * 110.62085 * 277.00510 * 12 11 10 35 35 H 1.09000 * 110.90805 * 153.85153 * 12 11 10 36 36 H 1.09001 * 109.49719 * 305.52697 * 17 15 13 37 37 H 1.08993 * 109.50301 * 65.62380 * 17 15 13 38 38 H 1.09000 * 109.45728 * 301.34261 * 18 17 15 39 39 H 1.08999 * 109.46161 * 181.38261 * 18 17 15 40 40 H 1.09000 * 109.49675 * 178.68455 * 19 18 17 41 41 H 1.09005 * 109.49518 * 58.59039 * 19 18 17 42 42 H 1.08995 * 109.58436 * 294.84417 * 20 19 18 43 43 H 1.09000 * 109.70539 * 174.48894 * 20 19 18 44 44 H 1.07996 * 127.01943 * 359.97438 * 25 24 22 45 45 H 1.08004 * 125.43007 * 180.14591 * 26 25 24 46 46 H 1.08006 * 125.79917 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0944 -2.5604 0.3574 11 6 -0.2179 -4.0397 0.8001 12 6 0.7578 -4.7405 -0.1837 13 6 1.8850 -3.7004 -0.3550 14 1 2.7174 -3.9401 0.3066 15 6 2.3632 -3.6859 -1.8082 16 1 2.9710 -2.7983 -1.9840 17 6 1.1527 -3.6771 -2.7471 18 6 1.6339 -3.8031 -4.1945 19 6 2.3748 -5.1300 -4.3739 20 6 3.5992 -5.1552 -3.4534 21 7 3.1610 -4.8902 -2.0763 22 6 3.4844 -5.7360 -1.0780 23 8 3.0274 -5.5648 0.0359 24 6 4.3915 -6.8683 -1.3364 25 6 4.3426 -8.2040 -0.7239 26 6 5.3576 -8.8951 -1.2648 27 8 6.0141 -8.1071 -2.1305 28 6 5.4558 -6.8943 -2.1894 29 1 -0.4850 0.8400 -0.0004 30 1 -0.3626 -1.8952 1.1782 31 1 -0.7290 -2.3691 -0.5079 32 1 0.1100 -4.1675 1.8318 33 1 -1.2369 -4.4033 0.6678 34 1 0.2666 -4.9373 -1.1366 35 1 1.1469 -5.6636 0.2459 36 1 0.4997 -4.5160 -2.5066 37 1 0.6050 -2.7427 -2.6258 38 1 2.3065 -2.9773 -4.4267 39 1 0.7761 -3.7724 -4.8663 40 1 2.6969 -5.2296 -5.4105 41 1 1.7103 -5.9553 -4.1180 42 1 4.3070 -4.3875 -3.7659 43 1 4.0762 -6.1340 -3.5031 44 1 3.6331 -8.5574 0.0096 45 1 5.6092 -9.9202 -1.0361 46 1 5.7906 -6.0740 -2.8071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025198421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:52 Heat of formation + Delta-G solvation = 27.390026 kcal Electronic energy + Delta-G solvation = -28720.023604 eV Core-core repulsion = 24998.865693 eV Total energy + Delta-G solvation = -3721.157910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.45588 -41.68732 -38.81217 -38.07144 -34.74151 -34.13736 -33.43284 -32.49330 -31.18754 -30.49853 -28.68918 -26.60630 -26.08730 -24.61905 -23.67330 -22.46291 -22.22259 -21.32778 -21.21012 -19.84101 -18.91860 -18.30208 -17.39825 -17.06540 -16.78123 -16.61808 -16.34928 -16.12106 -15.73294 -15.39936 -15.06157 -14.86084 -14.60932 -14.32068 -14.11237 -13.89599 -13.79904 -13.58198 -13.26641 -13.04197 -12.98677 -12.77646 -12.72539 -12.52127 -12.07910 -11.98217 -11.93468 -11.68230 -11.58595 -11.40507 -11.25491 -11.08158 -10.71379 -10.60058 -10.13119 -9.61157 -9.41047 -8.60640 -7.83536 -5.19882 0.51435 1.22728 1.43476 1.45154 1.54058 1.90819 2.15392 2.29172 2.51890 3.33042 3.58324 3.76336 3.85619 3.91189 3.94209 3.96821 4.09672 4.16899 4.22589 4.30847 4.38085 4.46008 4.53169 4.61184 4.66805 4.79016 4.80983 4.85892 4.90406 4.98186 5.04460 5.06610 5.13159 5.22982 5.26662 5.27427 5.33875 5.39870 5.47967 5.52718 5.60451 5.67050 5.76959 5.92085 6.07791 6.27319 6.57700 7.13592 7.32503 7.84576 8.55498 9.28088 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004326 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.934254 B = 6471.533301 C = 6660.653630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.234 4.234 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.186 3.814 11 C -0.140 4.140 12 C -0.107 4.107 13 C 0.153 3.847 14 H 0.060 0.940 15 C 0.150 3.850 16 H 0.049 0.951 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.123 4.123 20 C 0.088 3.912 21 N -0.596 5.596 22 C 0.565 3.435 23 O -0.552 6.552 24 C -0.253 4.253 25 C -0.200 4.200 26 C -0.019 4.019 27 O -0.175 6.175 28 C 0.025 3.975 29 H 0.247 0.753 30 H 0.023 0.977 31 H 0.000 1.000 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.152 0.848 45 H 0.248 0.752 46 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -19.080 -11.245 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.364 4.364 8 H 0.083 0.917 9 N -0.337 5.337 10 C 0.061 3.939 11 C -0.178 4.178 12 C -0.144 4.144 13 C 0.048 3.952 14 H 0.077 0.923 15 C 0.045 3.955 16 H 0.067 0.933 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.033 4.033 21 N -0.329 5.329 22 C 0.356 3.644 23 O -0.432 6.432 24 C -0.258 4.258 25 C -0.219 4.219 26 C -0.085 4.085 27 O -0.070 6.070 28 C -0.044 4.044 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.170 0.830 45 H 0.264 0.736 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.078 -18.868 -10.819 23.971 hybrid contribution -0.376 1.718 0.592 1.855 sum 9.702 -17.150 -10.227 22.200 Atomic orbital electron populations 1.70144 1.06280 1.25205 1.57635 1.25653 0.96404 1.00654 1.02231 0.85217 0.77693 0.79664 0.77620 1.20851 1.22052 1.19918 1.19172 0.90257 0.83762 1.43172 0.91654 1.44908 1.08065 1.03182 1.77584 1.21054 0.85336 0.91695 0.95817 1.22925 0.99326 0.96928 0.98653 1.22825 0.94997 0.97828 0.98792 1.21917 0.96459 0.84283 0.92556 0.92265 1.21622 0.91514 0.85126 0.97207 0.93333 1.21893 0.97108 1.01027 0.95683 1.21526 1.00610 0.98460 0.94795 1.21864 0.96687 0.96788 1.00749 1.22374 0.97786 1.03607 0.79536 1.48134 1.52742 1.23213 1.08799 1.17871 0.80659 0.81611 0.84270 1.90744 1.54699 1.72517 1.25277 1.21570 1.02043 0.96566 1.05584 1.22919 1.02663 0.92141 1.04195 1.24585 0.93247 0.98164 0.92482 1.83835 1.49864 1.21101 1.52218 1.24977 0.93083 0.87382 0.99007 0.94416 0.95880 0.98171 0.93099 0.90383 0.91322 0.90465 0.91483 0.94036 0.92239 0.91033 0.87561 0.91939 0.89772 0.87069 0.83003 0.73599 0.74443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.38 10.69 21.65 0.23 -58.15 16 2 C -0.06 -3.27 5.46 84.86 0.46 -2.80 16 3 Si 0.97 47.15 29.55 68.60 2.03 49.17 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.23 -13.76 9.59 84.03 0.81 -12.95 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.61 -33.60 3.03 -668.27 -2.02 -35.62 16 10 C 0.19 10.02 5.37 86.86 0.47 10.48 16 11 C -0.14 -6.13 7.10 32.03 0.23 -5.90 16 12 C -0.11 -4.48 5.37 31.82 0.17 -4.31 16 13 C 0.15 7.14 2.29 45.34 0.10 7.25 16 14 H 0.06 3.13 5.43 -45.87 -0.25 2.88 16 15 C 0.15 5.89 2.76 44.97 0.12 6.01 16 16 H 0.05 2.15 7.67 -2.38 -0.02 2.13 16 17 C -0.12 -4.29 4.92 30.67 0.15 -4.14 16 18 C -0.12 -3.01 5.88 30.62 0.18 -2.83 16 19 C -0.12 -2.31 6.08 30.67 0.19 -2.12 16 20 C 0.09 1.72 5.35 86.36 0.46 2.18 16 21 N -0.60 -18.04 2.97 -798.94 -2.37 -20.41 16 22 C 0.57 18.55 7.32 86.65 0.63 19.19 16 23 O -0.55 -22.84 10.24 -4.07 -0.04 -22.89 16 24 C -0.25 -6.20 5.58 -18.99 -0.11 -6.31 16 25 C -0.20 -4.18 11.14 23.65 0.26 -3.92 16 26 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 27 O -0.18 -2.71 10.52 4.52 0.05 -2.66 16 28 C 0.03 0.42 9.71 67.39 0.65 1.08 16 29 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.02 1.38 7.13 -2.39 -0.02 1.36 16 31 H 0.00 0.02 7.99 -2.39 -0.02 0.00 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 2.70 4.86 -2.38 -0.01 2.69 16 35 H 0.08 3.23 5.97 -2.39 -0.01 3.22 16 36 H 0.07 2.39 5.36 -2.39 -0.01 2.38 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.11 1.61 4.51 -2.39 -0.01 1.60 16 44 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 45 H 0.25 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.24 2.45 6.87 -2.91 -0.02 2.43 16 Total: -1.00 -76.84 347.46 4.22 -72.63 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.75 Total: 16.49 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.59 Total: 1.44 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -4.16 Total: -114.18 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.01 Total: -25.55 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.84 4.22 -72.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.015 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds