Wall clock time and date at job start Tue Mar 31 2020 12:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48496 * 109.47090 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47122 * 119.99794 * 3 2 1 6 6 H 1.48501 * 109.47227 * 239.99844 * 3 2 1 7 7 C 1.38813 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00035 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64566 * 14.67098 * 9 7 2 11 11 C 1.54917 * 104.83316 * 155.83477 * 10 9 7 12 12 C 1.55149 * 101.57829 * 37.00832 * 11 10 9 13 13 C 1.47024 * 125.65126 * 194.36112 * 9 7 2 14 14 H 1.08996 * 109.88060 * 300.51970 * 13 9 7 15 15 C 1.52999 * 109.87846 * 61.68319 * 13 9 7 16 16 H 1.09003 * 109.58631 * 303.31707 * 15 13 9 17 17 C 1.53194 * 109.59111 * 63.60498 * 15 13 9 18 18 C 1.53042 * 109.31599 * 174.42217 * 17 15 13 19 19 C 1.53040 * 109.53291 * 298.63472 * 18 17 15 20 20 C 1.53185 * 109.31783 * 61.36617 * 19 18 17 21 21 N 1.46925 * 109.58509 * 182.89251 * 15 13 9 22 22 C 1.34776 * 120.63028 * 6.58092 * 21 15 13 23 23 O 1.21611 * 120.00406 * 7.91686 * 22 21 15 24 24 C 1.47382 * 120.00019 * 187.92005 * 22 21 15 25 25 C 1.47027 * 127.19137 * 144.50787 * 24 22 21 26 26 C 1.34176 * 105.95111 * 179.88785 * 25 24 22 27 27 O 1.34212 * 109.12661 * 0.38151 * 26 25 24 28 28 C 1.33656 * 110.90794 * 359.74046 * 27 26 25 29 29 H 0.96997 * 119.99962 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.37226 * 274.67044 * 10 9 7 31 31 H 1.09003 * 110.37177 * 36.88748 * 10 9 7 32 32 H 1.09002 * 111.00565 * 155.08971 * 11 10 9 33 33 H 1.08999 * 111.00194 * 278.93791 * 11 10 9 34 34 H 1.09000 * 110.72065 * 82.86446 * 12 11 10 35 35 H 1.09003 * 110.72265 * 205.96044 * 12 11 10 36 36 H 1.09008 * 109.49405 * 294.37115 * 17 15 13 37 37 H 1.08999 * 109.49898 * 54.46314 * 17 15 13 38 38 H 1.09001 * 109.45719 * 58.65103 * 18 17 15 39 39 H 1.08996 * 109.46095 * 178.62401 * 18 17 15 40 40 H 1.09008 * 109.49369 * 181.31861 * 19 18 17 41 41 H 1.09001 * 109.50046 * 301.40941 * 19 18 17 42 42 H 1.09001 * 109.59038 * 65.14980 * 20 19 18 43 43 H 1.08996 * 109.59163 * 185.57744 * 20 19 18 44 44 H 1.07993 * 127.02170 * 0.02562 * 25 24 22 45 45 H 1.08005 * 125.43863 * 180.12437 * 26 25 24 46 46 H 1.08006 * 125.79986 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1077 -2.5526 -0.3034 11 6 -0.2470 -4.0211 -0.7767 12 6 0.7648 -4.7445 0.1507 13 6 1.8996 -3.7089 0.2953 14 1 2.6997 -3.9318 -0.4105 15 6 2.4422 -3.7318 1.7256 16 1 3.1736 -2.9335 1.8519 17 6 1.2898 -3.5338 2.7154 18 6 1.8154 -3.6963 4.1435 19 6 2.3715 -5.1103 4.3262 20 6 3.5361 -5.3264 3.3549 21 7 3.0757 -5.0306 1.9913 22 6 3.2311 -5.9338 1.0031 23 8 2.9794 -5.6268 -0.1464 24 6 3.7059 -7.2936 1.3155 25 6 3.2991 -8.5482 0.6658 26 6 3.9916 -9.5214 1.2770 27 8 4.7643 -8.9788 2.2308 28 6 4.6104 -7.6518 2.2718 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7064 -2.3842 0.5916 31 1 -0.4094 -1.8669 -1.0953 32 1 -1.2597 -4.3898 -0.6134 33 1 0.0402 -4.1231 -1.8232 34 1 0.3126 -4.9641 1.1179 35 1 1.1327 -5.6574 -0.3176 36 1 0.8727 -2.5341 2.5928 37 1 0.5156 -4.2772 2.5258 38 1 2.6067 -2.9688 4.3241 39 1 1.0025 -3.5317 4.8506 40 1 2.7243 -5.2329 5.3503 41 1 1.5871 -5.8390 4.1216 42 1 4.3580 -4.6595 3.6157 43 1 3.8714 -6.3620 3.4108 44 1 2.5897 -8.6627 -0.1404 45 1 3.9332 -10.5739 1.0420 46 1 5.1157 -6.9777 2.9476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025198422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:56 Heat of formation + Delta-G solvation = 51.906638 kcal Electronic energy + Delta-G solvation = -28796.880913 eV Core-core repulsion = 25076.786123 eV Total energy + Delta-G solvation = -3720.094790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.66733 -40.35096 -37.20669 -36.71067 -33.33811 -32.43897 -32.31387 -31.24672 -29.64270 -29.10790 -27.17193 -25.10155 -24.29435 -23.37474 -22.44457 -21.59759 -20.70219 -20.06663 -19.65016 -18.60937 -17.39530 -17.01223 -16.23072 -16.00630 -15.38969 -15.20596 -14.82760 -14.48321 -14.38918 -14.01152 -13.68997 -13.59400 -13.25306 -13.00474 -12.86572 -12.84859 -12.38857 -11.98968 -11.75215 -11.46288 -11.29638 -11.20293 -10.89279 -10.80114 -10.61724 -10.52874 -10.21248 -10.02459 -9.94992 -9.89410 -9.57242 -9.51488 -9.40146 -8.86654 -8.67838 -8.40989 -8.05635 -6.57543 -5.63517 -2.97166 1.37240 2.05545 2.78214 3.15157 3.44011 3.44925 3.49634 3.50537 4.45583 4.58289 4.60135 4.81778 4.90313 5.01994 5.16083 5.31229 5.42007 5.53214 5.55136 5.56025 5.59043 5.71916 5.79812 5.83474 5.92493 5.99409 6.06920 6.11992 6.15343 6.16755 6.27785 6.41077 6.52880 6.58627 6.65260 6.78564 6.84134 6.92590 7.00236 7.09091 7.12002 7.58580 7.69478 7.75054 7.79626 7.92989 8.39766 8.59570 9.32883 9.95274 10.66816 11.48209 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.004331 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.689227 B = 6463.689451 C = 6915.794400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.071 0.929 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.150 4.150 12 C -0.126 4.126 13 C 0.158 3.842 14 H 0.082 0.918 15 C 0.139 3.861 16 H 0.072 0.928 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.084 3.916 21 N -0.598 5.598 22 C 0.571 3.429 23 O -0.505 6.505 24 C -0.215 4.215 25 C -0.168 4.168 26 C -0.043 4.043 27 O -0.179 6.179 28 C -0.008 4.008 29 H 0.251 0.749 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.157 0.843 45 H 0.206 0.794 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -17.663 8.813 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.088 0.912 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.189 4.189 12 C -0.163 4.163 13 C 0.051 3.949 14 H 0.099 0.901 15 C 0.036 3.964 16 H 0.090 0.910 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.039 4.039 21 N -0.331 5.331 22 C 0.360 3.640 23 O -0.382 6.382 24 C -0.220 4.220 25 C -0.188 4.188 26 C -0.109 4.109 27 O -0.075 6.075 28 C -0.077 4.077 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.175 0.825 45 H 0.223 0.777 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.315 -17.393 8.353 20.302 hybrid contribution 0.253 1.099 0.175 1.141 sum 6.569 -16.294 8.528 19.529 Atomic orbital electron populations 1.69937 1.04869 1.24946 1.56750 1.24846 0.95568 0.97466 1.02247 0.86312 0.78572 0.83695 0.77866 1.21740 1.21301 1.21257 1.18919 0.90212 0.82524 1.43458 0.91154 1.44665 1.06167 1.01593 1.79496 1.21360 0.85231 0.90090 0.98266 1.23005 0.97184 0.99792 0.98906 1.22961 0.96112 0.98577 0.98671 1.21762 0.95952 0.85704 0.91479 0.90070 1.22188 0.93868 0.81442 0.98946 0.91045 1.21940 0.97863 1.03842 0.92489 1.21555 1.00464 0.95728 0.98072 1.21887 0.98166 0.98507 0.98388 1.22276 0.97250 1.01858 0.82554 1.48159 1.59679 1.17207 1.08103 1.17301 0.78606 0.82794 0.85325 1.90791 1.49117 1.77891 1.20355 1.21801 1.03919 0.95447 1.00826 1.22783 1.03368 0.89985 1.02672 1.23896 0.95698 0.99413 0.91901 1.83788 1.54804 1.20845 1.48065 1.24816 1.00935 0.81873 1.00089 0.93856 0.96150 0.91580 0.93195 0.92667 0.92837 0.90689 0.89155 0.91888 0.92091 0.92256 0.91368 0.91741 0.91319 0.89138 0.82505 0.77734 0.76572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.57 55.49 0.59 -26.43 16 2 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 3 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.21 9.75 -15.06 -0.15 -6.36 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.59 -15.38 2.66 -162.58 -0.43 -15.81 16 10 C 0.18 4.44 5.42 -2.53 -0.01 4.43 16 11 C -0.15 -3.19 7.08 -24.58 -0.17 -3.37 16 12 C -0.13 -2.56 4.98 -24.91 -0.12 -2.68 16 13 C 0.16 3.52 2.29 -66.96 -0.15 3.36 16 14 H 0.08 2.02 5.70 -52.99 -0.30 1.72 16 15 C 0.14 2.66 2.68 -67.60 -0.18 2.48 16 16 H 0.07 1.50 7.90 -51.93 -0.41 1.09 16 17 C -0.12 -2.22 4.96 -26.61 -0.13 -2.35 16 18 C -0.12 -1.68 5.88 -26.69 -0.16 -1.83 16 19 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 20 C 0.08 0.94 5.78 -3.71 -0.02 0.92 16 21 N -0.60 -9.27 2.94 -166.50 -0.49 -9.76 16 22 C 0.57 9.42 6.79 -12.54 -0.09 9.33 16 23 O -0.50 -10.13 10.58 5.27 0.06 -10.08 16 24 C -0.22 -2.82 5.85 -103.27 -0.60 -3.42 16 25 C -0.17 -1.93 11.15 -37.45 -0.42 -2.35 16 26 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 27 O -0.18 -1.75 10.52 7.65 0.08 -1.66 16 28 C -0.01 -0.08 9.87 30.07 0.30 0.21 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.02 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.07 1.86 6.92 -51.93 -0.36 1.50 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.05 5.35 -51.93 -0.28 0.77 16 35 H 0.07 1.53 5.77 -51.93 -0.30 1.23 16 36 H 0.09 1.97 7.91 -51.92 -0.41 1.56 16 37 H 0.06 1.15 5.62 -51.93 -0.29 0.86 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.81 3.26 -51.93 -0.17 0.64 16 44 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.22 1.51 6.12 -52.48 -0.32 1.18 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -32.53 346.08 -8.44 -40.97 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.61 Total: 3.81 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.82 Total: -3.51 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.34 Total: -52.00 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.14 Total: -11.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.53 -8.44 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.874 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds