Wall clock time and date at job start Tue Mar 31 2020 12:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99568 * 359.71829 * 7 2 1 9 9 N 1.36929 * 120.00031 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.46677 * 34.30178 * 10 9 7 12 12 C 1.56004 * 110.52783 * 271.65630 * 10 9 7 13 13 C 1.56677 * 105.60331 * 248.35466 * 12 10 9 14 14 C 1.51567 * 101.86760 * 25.35725 * 13 12 10 15 15 H 1.09001 * 111.53635 * 71.66620 * 14 13 12 16 16 C 1.51516 * 123.34602 * 208.00993 * 14 13 12 17 17 N 1.49622 * 102.49515 * 151.64355 * 16 14 13 18 18 C 1.34784 * 126.07325 * 154.37418 * 17 16 14 19 19 O 1.21284 * 119.99628 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99895 * 359.97438 * 18 17 16 21 21 C 1.52997 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47486 * 180.02562 * 21 20 18 23 23 C 1.34513 * 125.79129 * 89.71370 * 22 21 20 24 24 C 1.41379 * 106.83912 * 179.89584 * 23 22 21 25 25 C 1.34511 * 106.84017 * 0.36585 * 24 23 22 26 26 O 1.34302 * 108.42430 * 359.78042 * 25 24 23 27 27 C 1.49286 * 107.85535 * 334.35125 * 17 16 14 28 28 C 1.49709 * 110.52054 * 156.94002 * 10 9 7 29 29 H 1.09008 * 108.54318 * 196.60306 * 28 10 9 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 32 32 H 1.09001 * 110.18849 * 7.41347 * 12 10 9 33 33 H 1.08997 * 110.18641 * 129.25901 * 12 10 9 34 34 H 1.09004 * 110.90764 * 267.22320 * 13 12 10 35 35 H 1.08995 * 110.99702 * 143.53607 * 13 12 10 36 36 H 1.09002 * 110.80542 * 269.89799 * 16 14 13 37 37 H 1.09000 * 110.80457 * 33.39181 * 16 14 13 38 38 H 1.08998 * 109.46985 * 299.99910 * 20 18 17 39 39 H 1.09003 * 109.46987 * 60.00299 * 20 18 17 40 40 H 1.09008 * 109.46658 * 300.00163 * 21 20 18 41 41 H 1.09003 * 109.47043 * 59.99359 * 21 20 18 42 42 H 1.08000 * 126.57488 * 0.02562 * 23 22 21 43 43 H 1.08002 * 126.57801 * 180.12412 * 24 23 22 44 44 H 1.08002 * 125.78446 * 179.79559 * 25 24 23 45 45 H 1.08993 * 110.39740 * 234.81323 * 27 17 16 46 46 H 1.09003 * 110.39525 * 112.40815 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 0.0036 9 7 3.3795 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5722 -3.2227 -0.5758 12 6 4.3483 -2.9663 1.4603 13 6 5.8920 -2.8477 1.7009 14 6 6.2782 -1.7611 0.7173 15 1 5.9196 -0.7836 1.0399 16 6 7.6522 -1.6580 0.0873 17 7 7.3598 -0.9911 -1.2198 18 6 8.2204 -0.2444 -1.9398 19 8 7.8652 0.2465 -2.9904 20 6 9.6240 -0.0195 -1.4394 21 6 10.3867 0.8557 -2.4360 22 6 11.7905 1.0801 -1.9360 23 6 12.8541 0.3005 -2.2013 24 6 13.9610 0.8784 -1.5381 25 6 13.5059 1.9719 -0.9006 26 8 12.1905 2.0891 -1.1451 27 6 5.9457 -1.3000 -1.5851 28 6 5.4918 -2.2805 -0.5486 29 1 5.8983 -3.2571 -0.8116 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8070 -2.3340 2.1642 33 1 4.0285 -4.0032 1.5623 34 1 6.3957 -3.7849 1.4641 35 1 6.1053 -2.5406 2.7247 36 1 8.3126 -1.0416 0.6972 37 1 8.0810 -2.6476 -0.0705 38 1 9.5889 0.4795 -0.4710 39 1 10.1309 -0.9789 -1.3357 40 1 10.4218 0.3570 -3.4047 41 1 9.8797 1.8150 -2.5395 42 1 12.8615 -0.5939 -2.8066 43 1 14.9762 0.5100 -1.5396 44 1 14.0980 2.6421 -0.2951 45 1 5.8989 -1.7476 -2.5777 46 1 5.3371 -0.3966 -1.5456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026194916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:33 Heat of formation + Delta-G solvation = 8.134708 kcal Electronic energy + Delta-G solvation = -26579.002117 eV Core-core repulsion = 22857.009233 eV Total energy + Delta-G solvation = -3721.992884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83394 -40.66797 -38.86647 -35.40086 -34.30885 -33.38584 -33.05812 -31.15038 -30.21238 -28.89622 -28.57478 -25.87507 -24.74773 -23.13813 -22.55440 -22.02637 -20.62892 -20.17450 -19.19585 -18.99285 -17.93026 -17.65320 -16.71086 -16.44534 -16.17586 -15.80693 -14.99310 -14.81413 -14.53655 -14.29204 -14.13002 -13.82525 -13.48985 -13.10887 -12.98563 -12.79734 -12.71751 -12.62322 -12.45494 -12.29163 -12.04879 -11.77413 -11.45422 -11.36683 -11.13285 -10.92138 -10.78692 -10.48872 -10.36414 -10.21255 -10.14283 -9.93559 -9.72498 -9.57629 -8.95029 -8.73649 -8.66777 -7.29787 -5.78936 -3.14684 1.43357 2.31619 2.60741 2.65676 2.91461 3.36313 3.40303 3.45955 4.02441 4.26766 4.57592 4.58874 4.67212 4.69738 4.75763 4.81377 4.90289 5.01793 5.14745 5.18935 5.26812 5.37492 5.41113 5.44818 5.50594 5.52939 5.56057 5.65096 5.67359 5.70819 5.79849 5.85052 5.88057 6.01319 6.09976 6.11459 6.22004 6.24265 6.28738 6.38239 6.47419 6.67158 6.86753 6.91843 7.47892 7.97284 8.11583 8.40385 9.18119 9.90849 10.09916 11.39323 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002898 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.372328 B = 9660.670055 C =10444.686179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.202 3.798 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.099 4.099 14 C -0.127 4.127 15 H 0.089 0.911 16 C 0.116 3.884 17 N -0.625 5.625 18 C 0.527 3.473 19 O -0.542 6.542 20 C -0.132 4.132 21 C -0.026 4.026 22 C -0.006 4.006 23 C -0.212 4.212 24 C -0.214 4.214 25 C -0.045 4.045 26 O -0.175 6.175 27 C 0.131 3.869 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.324 -3.339 0.864 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.091 3.909 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.137 4.137 14 C -0.146 4.146 15 H 0.108 0.892 16 C -0.006 4.006 17 N -0.360 5.360 18 C 0.316 3.684 19 O -0.420 6.420 20 C -0.172 4.172 21 C -0.063 4.063 22 C -0.057 4.057 23 C -0.231 4.231 24 C -0.233 4.233 25 C -0.113 4.113 26 O -0.071 6.071 27 C 0.010 3.990 28 C -0.144 4.144 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 26.735 -2.857 0.326 26.890 hybrid contribution 0.865 1.095 0.158 1.405 sum 27.601 -1.762 0.484 27.661 Atomic orbital electron populations 1.69694 1.05073 1.25817 1.57410 1.24655 0.95183 0.97088 1.01979 0.86636 0.79116 0.85277 0.77979 1.20926 1.21700 1.20532 1.19072 0.80533 0.94684 1.43085 0.89064 1.42798 1.03987 1.01820 1.89922 1.20000 0.88292 0.89699 0.92869 0.91717 1.23871 0.93520 1.00986 1.00098 1.21884 0.97339 0.96679 0.97778 1.22638 0.94279 1.00981 0.96746 0.89227 1.21807 0.97406 0.97559 0.83790 1.49888 1.13046 1.50644 1.22444 1.20174 0.86511 0.77790 0.83933 1.90732 1.78441 1.49664 1.23145 1.21633 0.92625 1.02146 1.00747 1.19868 0.86218 1.01896 0.98351 1.22487 0.97203 0.89089 0.96874 1.21627 0.92212 1.02968 1.06270 1.21842 1.00507 0.98120 1.02867 1.24041 0.81630 1.01201 1.04399 1.84044 1.24885 1.44038 1.54168 1.20950 0.80540 0.99538 0.97986 1.22099 0.99003 0.98733 0.94565 0.90783 0.93042 0.80583 0.90416 0.92338 0.91733 0.91934 0.90598 0.90812 0.88593 0.88495 0.87917 0.89105 0.83438 0.83511 0.78189 0.90842 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 7 C -0.24 -6.65 10.45 -15.06 -0.16 -6.81 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 9 N -0.74 -16.65 4.69 -53.45 -0.25 -16.90 16 10 C 0.20 3.55 3.45 -67.95 -0.23 3.31 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.14 -2.19 6.77 -23.14 -0.16 -2.35 16 13 C -0.10 -1.15 6.62 -25.47 -0.17 -1.32 16 14 C -0.13 -1.61 3.08 -89.46 -0.28 -1.89 16 15 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 16 C 0.12 1.20 6.48 -3.05 -0.02 1.19 16 17 N -0.63 -8.38 3.43 -171.57 -0.59 -8.97 16 18 C 0.53 7.26 7.88 -10.98 -0.09 7.17 16 19 O -0.54 -9.56 16.35 5.55 0.09 -9.46 16 20 C -0.13 -1.27 4.74 -27.88 -0.13 -1.40 16 21 C -0.03 -0.26 5.04 -27.89 -0.14 -0.40 16 22 C -0.01 -0.06 6.57 -35.63 -0.23 -0.30 16 23 C -0.21 -1.91 10.81 -39.70 -0.43 -2.33 16 24 C -0.21 -1.73 10.91 -39.70 -0.43 -2.16 16 25 C -0.05 -0.36 12.09 29.41 0.36 0.00 16 26 O -0.18 -1.84 10.65 5.71 0.06 -1.78 16 27 C 0.13 2.05 6.67 -4.12 -0.03 2.02 16 28 C -0.12 -1.79 2.25 -91.23 -0.21 -1.99 16 29 H 0.07 0.93 7.99 -51.92 -0.41 0.52 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.36 8.16 4.55 -40.82 -0.19 7.98 16 32 H 0.08 1.38 7.98 -51.93 -0.41 0.96 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.65 7.58 -51.93 -0.39 0.26 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.85 7.91 -51.93 -0.41 0.44 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.99 8.10 -51.92 -0.42 0.57 16 41 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.20 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.07 1.38 7.17 -51.93 -0.37 1.01 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -33.54 371.65 -8.73 -42.27 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.26 Total: 7.11 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.44 Total: -7.15 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.06 Total: -54.13 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.15 Total: -11.24 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.54 -8.73 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026194916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.406 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds