Wall clock time and date at job start Tue Mar 31 2020 12:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47220 * 269.99679 * 3 2 1 5 5 H 1.48500 * 109.47349 * 30.00171 * 3 2 1 6 6 H 1.48508 * 109.46994 * 149.99519 * 3 2 1 7 7 C 1.38811 * 119.99273 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00544 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00166 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.91595 * 34.66479 * 10 9 7 12 12 C 1.53867 * 109.92282 * 273.54340 * 10 9 7 13 13 C 1.54131 * 106.49813 * 242.35310 * 12 10 9 14 14 C 1.54847 * 104.63200 * 335.50262 * 13 12 10 15 15 H 1.09003 * 113.73329 * 273.72060 * 14 13 12 16 16 C 1.54206 * 108.04621 * 145.45514 * 14 13 12 17 17 N 1.46904 * 107.63208 * 272.99016 * 16 14 13 18 18 C 1.34780 * 125.61483 * 181.50046 * 17 16 14 19 19 O 1.21274 * 120.00084 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00261 * 0.02684 * 18 17 16 21 21 C 1.52999 * 109.47320 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46924 * 179.97438 * 21 20 18 23 23 C 1.41380 * 126.58375 * 269.71292 * 22 21 20 24 24 C 1.34511 * 106.84562 * 179.83893 * 23 22 21 25 25 O 1.34305 * 108.41940 * 0.42693 * 24 23 22 26 26 C 1.34307 * 109.47391 * 359.72543 * 25 24 23 27 27 C 1.47334 * 108.76761 * 1.52088 * 17 16 14 28 28 C 1.53718 * 109.91931 * 155.98888 * 10 9 7 29 29 H 1.09008 * 112.96442 * 264.45849 * 28 10 9 30 30 H 0.97007 * 119.99714 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99681 * 0.02562 * 9 7 2 32 32 H 1.09007 * 110.05082 * 123.09590 * 12 10 9 33 33 H 1.08998 * 110.05237 * 1.61333 * 12 10 9 34 34 H 1.09007 * 110.40620 * 216.71650 * 13 12 10 35 35 H 1.08997 * 110.50268 * 94.33833 * 13 12 10 36 36 H 1.08997 * 109.82598 * 32.51873 * 16 14 13 37 37 H 1.09006 * 109.81981 * 153.46614 * 16 14 13 38 38 H 1.09007 * 109.46833 * 300.00052 * 20 18 17 39 39 H 1.09001 * 109.47198 * 59.99899 * 20 18 17 40 40 H 1.08993 * 109.47227 * 299.99756 * 21 20 18 41 41 H 1.09001 * 109.47061 * 59.99823 * 21 20 18 42 42 H 1.08002 * 126.57473 * 359.97438 * 23 22 21 43 43 H 1.08000 * 125.79118 * 180.18925 * 24 23 22 44 44 H 1.08002 * 125.78893 * 180.02562 * 26 25 24 45 45 H 1.08994 * 110.30062 * 217.15850 * 27 17 16 46 46 H 1.09002 * 110.38104 * 95.05981 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9734 -3.5570 0.5834 12 6 2.3974 -4.0662 -1.4433 13 6 1.6722 -5.4015 -1.7017 14 6 1.4822 -6.0219 -0.2957 15 1 2.3364 -6.6073 0.0446 16 6 0.1413 -6.7835 -0.2869 17 7 -0.9129 -5.8244 0.0692 18 6 -2.2219 -6.1131 0.2094 19 8 -3.0073 -5.2383 0.5069 20 6 -2.7096 -7.5231 -0.0035 21 6 -4.2228 -7.5780 0.2160 22 6 -4.7105 -8.9877 0.0025 23 6 -5.1562 -9.5497 -1.2158 24 6 -5.4933 -10.8258 -0.9562 25 8 -5.2855 -11.0624 0.3494 26 6 -4.8108 -9.9513 0.9358 27 6 -0.3036 -4.4948 0.2473 28 6 1.1763 -4.7704 0.5886 29 1 1.3562 -4.9391 1.6504 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0002 32 1 3.4740 -4.1987 -1.5508 33 1 2.0424 -3.3071 -2.1403 34 1 2.2854 -6.0527 -2.3247 35 1 0.7054 -5.2258 -2.1733 36 1 -0.0548 -7.1982 -1.2756 37 1 0.1765 -7.5851 0.4510 38 1 -2.4780 -7.8378 -1.0211 39 1 -2.2158 -8.1891 0.7041 40 1 -4.4539 -7.2634 1.2337 41 1 -4.7169 -6.9119 -0.4913 42 1 -5.2129 -9.0508 -2.1720 43 1 -5.8710 -11.5380 -1.6749 44 1 -4.5529 -9.8489 1.9795 45 1 -0.7880 -3.9636 1.0665 46 1 -0.3779 -3.9167 -0.6738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026235598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:47 Heat of formation + Delta-G solvation = -8.639680 kcal Electronic energy + Delta-G solvation = -26527.734997 eV Core-core repulsion = 22805.014721 eV Total energy + Delta-G solvation = -3722.720276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.77550 -40.43762 -38.55953 -35.14345 -34.93405 -33.24585 -31.69080 -30.95856 -29.76360 -28.81771 -28.38165 -25.79187 -24.66847 -23.36183 -22.74934 -21.82837 -20.41779 -19.72834 -19.02947 -18.84124 -17.78544 -17.22787 -16.88620 -16.16664 -15.98030 -15.36053 -15.21924 -14.83684 -14.81460 -14.06925 -13.93935 -13.41117 -13.15417 -13.04810 -12.96428 -12.72836 -12.56230 -12.53261 -12.33023 -12.10480 -11.90958 -11.56526 -11.27275 -11.06834 -10.81618 -10.65501 -10.58525 -10.44267 -10.27362 -10.13207 -9.95587 -9.87079 -9.60039 -9.53638 -8.89109 -8.77295 -8.39618 -6.94956 -5.74576 -3.04478 1.52285 2.33686 2.80942 2.90586 3.19199 3.44471 3.49417 3.51619 4.40632 4.53608 4.57023 4.59587 4.71942 4.78413 4.93086 4.95836 5.06534 5.12551 5.36425 5.42562 5.46936 5.48438 5.51063 5.54937 5.58836 5.62504 5.77871 5.83966 5.89773 5.95937 5.98390 6.00501 6.04768 6.07551 6.27543 6.29802 6.37874 6.52022 6.52642 6.55429 6.67894 6.80056 6.87509 7.10422 7.72142 7.73153 8.35139 8.43706 9.54310 10.11563 10.44868 11.47626 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002552 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.097019 B =10967.608846 C =11779.053723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.182 3.818 11 H 0.053 0.947 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.104 4.104 15 H 0.102 0.898 16 C 0.108 3.892 17 N -0.616 5.616 18 C 0.522 3.478 19 O -0.538 6.538 20 C -0.127 4.127 21 C -0.036 4.036 22 C -0.175 4.175 23 C -0.208 4.208 24 C -0.045 4.045 25 O -0.180 6.180 26 C -0.042 4.042 27 C 0.116 3.884 28 C -0.105 4.105 29 H 0.087 0.913 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.201 0.799 44 H 0.201 0.799 45 H 0.079 0.921 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -24.138 -1.649 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.072 3.928 11 H 0.071 0.929 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.123 4.123 15 H 0.120 0.880 16 C -0.016 4.016 17 N -0.351 5.351 18 C 0.310 3.690 19 O -0.415 6.415 20 C -0.167 4.167 21 C -0.074 4.074 22 C -0.177 4.177 23 C -0.227 4.227 24 C -0.113 4.113 25 O -0.075 6.075 26 C -0.109 4.109 27 C -0.006 4.006 28 C -0.125 4.125 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.165 0.835 43 H 0.217 0.783 44 H 0.218 0.782 45 H 0.098 0.902 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.054 -23.775 -1.320 24.342 hybrid contribution 0.304 1.095 -0.295 1.174 sum -4.750 -22.681 -1.615 23.229 Atomic orbital electron populations 1.69667 1.05068 1.25741 1.57350 1.24759 0.95488 0.97700 1.02939 0.86211 0.78630 0.83992 0.77458 1.21783 1.21812 1.20801 1.19233 0.90985 0.84139 1.42971 0.91179 1.42719 1.05954 0.99674 1.88497 1.20673 0.93842 0.85605 0.92722 0.92878 1.22981 0.98771 0.96048 1.00837 1.22416 1.00676 0.97164 0.95060 1.23161 0.95680 0.96218 0.97214 0.87962 1.21971 0.87725 0.92001 0.99856 1.48586 1.06338 1.11201 1.68948 1.20306 0.80643 0.90788 0.77242 1.90743 1.53614 1.49332 1.47815 1.21610 0.96971 0.94139 1.04006 1.19716 0.93232 0.90671 1.03813 1.20535 1.05979 0.97620 0.93524 1.21811 1.06137 0.95130 0.99625 1.24012 1.05738 0.98234 0.83307 1.84065 1.64860 1.36835 1.21781 1.23919 1.03748 0.84070 0.99203 1.22151 0.91992 0.83587 1.02819 1.23207 0.94772 0.95257 0.99249 0.89468 0.93427 0.77724 0.93028 0.90786 0.92417 0.91822 0.91591 0.91973 0.89075 0.89192 0.90207 0.90032 0.83452 0.78261 0.78192 0.90225 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.63 9.95 -15.06 -0.15 -6.78 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.76 4.79 -52.63 -0.25 -18.01 16 10 C 0.18 3.45 3.24 -67.11 -0.22 3.23 16 11 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 12 C -0.15 -2.44 6.56 -25.69 -0.17 -2.61 16 13 C -0.12 -1.54 5.58 -25.17 -0.14 -1.68 16 14 C -0.10 -1.24 4.25 -87.26 -0.37 -1.61 16 15 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 16 C 0.11 1.19 5.71 -3.19 -0.02 1.17 16 17 N -0.62 -9.09 3.32 -171.11 -0.57 -9.66 16 18 C 0.52 7.95 7.85 -10.98 -0.09 7.87 16 19 O -0.54 -10.60 16.23 5.56 0.09 -10.51 16 20 C -0.13 -1.35 4.87 -27.88 -0.14 -1.48 16 21 C -0.04 -0.39 5.02 -27.89 -0.14 -0.53 16 22 C -0.18 -1.70 5.42 -104.74 -0.57 -2.27 16 23 C -0.21 -1.85 10.87 -39.70 -0.43 -2.28 16 24 C -0.05 -0.35 12.09 29.41 0.36 0.00 16 25 O -0.18 -1.65 10.65 5.69 0.06 -1.59 16 26 C -0.04 -0.36 12.01 29.42 0.35 -0.01 16 27 C 0.12 2.08 4.40 -2.88 -0.01 2.07 16 28 C -0.10 -1.65 4.03 -87.78 -0.35 -2.00 16 29 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.39 10.13 5.33 -40.82 -0.22 9.91 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.06 0.92 7.28 -51.93 -0.38 0.55 16 36 H 0.07 0.64 7.83 -51.93 -0.41 0.24 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.20 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.08 1.64 8.02 -51.93 -0.42 1.22 16 46 H 0.08 1.66 6.30 -51.93 -0.33 1.34 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -33.64 370.53 -8.76 -42.40 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.19 Total: 9.40 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.18 Total: -7.38 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.10 Total: -55.35 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.15 Total: -12.10 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.64 -8.76 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026235598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds