Wall clock time and date at job start Tue Mar 31 2020 12:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47220 * 269.99679 * 3 2 1 5 5 H 1.48500 * 109.47349 * 30.00171 * 3 2 1 6 6 H 1.48508 * 109.46994 * 149.99519 * 3 2 1 7 7 C 1.38811 * 119.99273 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99858 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00544 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00166 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.91595 * 34.66479 * 10 9 7 12 12 C 1.53867 * 109.92282 * 273.54340 * 10 9 7 13 13 C 1.54131 * 106.49813 * 242.35310 * 12 10 9 14 14 C 1.54847 * 104.63200 * 335.50262 * 13 12 10 15 15 H 1.09003 * 113.73329 * 273.72060 * 14 13 12 16 16 C 1.54206 * 108.04621 * 145.45514 * 14 13 12 17 17 N 1.46904 * 107.63208 * 272.99016 * 16 14 13 18 18 C 1.34780 * 125.61483 * 181.50046 * 17 16 14 19 19 O 1.21274 * 120.00084 * 180.02562 * 18 17 16 20 20 C 1.50704 * 120.00261 * 0.02684 * 18 17 16 21 21 C 1.52999 * 109.47320 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46924 * 179.97438 * 21 20 18 23 23 C 1.41380 * 126.58375 * 269.71292 * 22 21 20 24 24 C 1.34511 * 106.84562 * 179.83893 * 23 22 21 25 25 O 1.34305 * 108.41940 * 0.42693 * 24 23 22 26 26 C 1.34307 * 109.47391 * 359.72543 * 25 24 23 27 27 C 1.47334 * 108.76761 * 1.52088 * 17 16 14 28 28 C 1.53718 * 109.91931 * 155.98888 * 10 9 7 29 29 H 1.09008 * 112.96442 * 264.45849 * 28 10 9 30 30 H 0.97007 * 119.99714 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99681 * 0.02562 * 9 7 2 32 32 H 1.09007 * 110.05082 * 123.09590 * 12 10 9 33 33 H 1.08998 * 110.05237 * 1.61333 * 12 10 9 34 34 H 1.09007 * 110.40620 * 216.71650 * 13 12 10 35 35 H 1.08997 * 110.50268 * 94.33833 * 13 12 10 36 36 H 1.08997 * 109.82598 * 32.51873 * 16 14 13 37 37 H 1.09006 * 109.81981 * 153.46614 * 16 14 13 38 38 H 1.09007 * 109.46833 * 300.00052 * 20 18 17 39 39 H 1.09001 * 109.47198 * 59.99899 * 20 18 17 40 40 H 1.08993 * 109.47227 * 299.99756 * 21 20 18 41 41 H 1.09001 * 109.47061 * 59.99823 * 21 20 18 42 42 H 1.08002 * 126.57473 * 359.97438 * 23 22 21 43 43 H 1.08000 * 125.79118 * 180.18925 * 24 23 22 44 44 H 1.08002 * 125.78893 * 180.02562 * 26 25 24 45 45 H 1.08994 * 110.30062 * 217.15850 * 27 17 16 46 46 H 1.09002 * 110.38104 * 95.05981 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9734 -3.5570 0.5834 12 6 2.3974 -4.0662 -1.4433 13 6 1.6722 -5.4015 -1.7017 14 6 1.4822 -6.0219 -0.2957 15 1 2.3364 -6.6073 0.0446 16 6 0.1413 -6.7835 -0.2869 17 7 -0.9129 -5.8244 0.0692 18 6 -2.2219 -6.1131 0.2094 19 8 -3.0073 -5.2383 0.5069 20 6 -2.7096 -7.5231 -0.0035 21 6 -4.2228 -7.5780 0.2160 22 6 -4.7105 -8.9877 0.0025 23 6 -5.1562 -9.5497 -1.2158 24 6 -5.4933 -10.8258 -0.9562 25 8 -5.2855 -11.0624 0.3494 26 6 -4.8108 -9.9513 0.9358 27 6 -0.3036 -4.4948 0.2473 28 6 1.1763 -4.7704 0.5886 29 1 1.3562 -4.9391 1.6504 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0002 32 1 3.4740 -4.1987 -1.5508 33 1 2.0424 -3.3071 -2.1403 34 1 2.2854 -6.0527 -2.3247 35 1 0.7054 -5.2258 -2.1733 36 1 -0.0548 -7.1982 -1.2756 37 1 0.1765 -7.5851 0.4510 38 1 -2.4780 -7.8378 -1.0211 39 1 -2.2158 -8.1891 0.7041 40 1 -4.4539 -7.2634 1.2337 41 1 -4.7169 -6.9119 -0.4913 42 1 -5.2129 -9.0508 -2.1720 43 1 -5.8710 -11.5380 -1.6749 44 1 -4.5529 -9.8489 1.9795 45 1 -0.7880 -3.9636 1.0665 46 1 -0.3779 -3.9167 -0.6738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026235598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:46 Heat of formation + Delta-G solvation = -30.168540 kcal Electronic energy + Delta-G solvation = -26528.668558 eV Core-core repulsion = 22805.014721 eV Total energy + Delta-G solvation = -3723.653837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.40696 -41.66858 -39.84040 -36.64862 -35.79745 -34.93262 -32.72140 -32.48954 -30.78588 -29.85930 -29.72341 -27.16302 -25.84290 -25.16553 -23.89338 -22.42934 -21.12034 -20.93432 -20.29077 -20.20764 -19.14561 -18.55420 -17.88167 -17.27041 -16.86007 -16.70614 -16.56260 -16.28041 -15.64154 -15.45655 -15.15697 -14.95555 -14.35450 -14.31211 -13.91477 -13.74231 -13.64031 -13.62721 -13.31513 -13.26412 -13.12160 -13.00731 -12.88837 -12.62050 -12.36508 -12.17934 -11.90946 -11.78043 -11.60132 -11.54411 -11.46762 -11.30011 -10.92540 -10.90793 -10.52002 -9.63691 -9.39902 -8.99135 -7.94115 -5.22910 0.91424 1.44657 1.46845 1.55234 1.62505 1.65538 2.05449 2.36502 2.55367 3.31692 3.40311 3.47506 3.70419 3.79475 3.92086 4.01048 4.17264 4.22277 4.23044 4.30587 4.34305 4.40547 4.42100 4.45775 4.60289 4.68255 4.69188 4.77705 4.79394 4.85548 4.88340 4.93858 5.08381 5.11643 5.15695 5.24518 5.26371 5.29423 5.35026 5.37628 5.49333 5.54967 5.62238 5.66268 6.25315 6.28203 6.58478 7.16347 7.33131 8.12441 8.32219 9.29584 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022720 B = 0.002552 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.097019 B =10967.608846 C =11779.053723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.083 4.083 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.170 3.830 11 H 0.053 0.947 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.082 4.082 15 H 0.144 0.856 16 C 0.103 3.897 17 N -0.615 5.615 18 C 0.513 3.487 19 O -0.597 6.597 20 C -0.110 4.110 21 C -0.031 4.031 22 C -0.193 4.193 23 C -0.229 4.229 24 C -0.039 4.039 25 O -0.189 6.189 26 C -0.041 4.041 27 C 0.125 3.875 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.248 0.752 31 H 0.373 0.627 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.153 0.847 43 H 0.234 0.766 44 H 0.224 0.776 45 H 0.035 0.965 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -28.161 -1.980 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.275 4.275 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.072 0.928 12 C -0.180 4.180 13 C -0.146 4.146 14 C -0.101 4.101 15 H 0.162 0.838 16 C -0.018 4.018 17 N -0.349 5.349 18 C 0.304 3.696 19 O -0.478 6.478 20 C -0.149 4.149 21 C -0.069 4.069 22 C -0.194 4.194 23 C -0.248 4.248 24 C -0.105 4.105 25 O -0.085 6.085 26 C -0.108 4.108 27 C 0.002 3.998 28 C -0.121 4.121 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.207 0.793 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.171 0.829 43 H 0.250 0.750 44 H 0.240 0.760 45 H 0.054 0.946 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.947 -27.878 -1.667 28.083 hybrid contribution -0.314 2.303 -0.212 2.334 sum -3.261 -25.575 -1.879 25.850 Atomic orbital electron populations 1.69859 1.06828 1.25862 1.60061 1.25604 0.96279 1.01298 1.04276 0.85137 0.77749 0.79565 0.77328 1.21565 1.22677 1.19035 1.19681 0.91518 0.85297 1.40163 0.90285 1.42986 1.05630 1.01154 1.88562 1.21026 0.93872 0.84420 0.94533 0.92843 1.22789 1.00333 0.97072 0.97824 1.22383 0.99882 0.95697 0.96648 1.23253 0.97765 0.94413 0.94649 0.83779 1.22304 0.85531 0.91564 1.02434 1.48699 1.07195 1.10555 1.68412 1.21287 0.80206 0.92247 0.75892 1.90717 1.55169 1.51480 1.50439 1.21593 0.96601 0.90805 1.05926 1.19559 0.93535 0.91277 1.02517 1.20477 1.07375 0.97011 0.94553 1.22019 1.07103 0.95931 0.99785 1.24653 1.04307 0.98437 0.83135 1.84087 1.64882 1.37025 1.22505 1.24343 1.02852 0.83581 1.00022 1.21732 0.93739 0.85013 0.99365 1.23115 0.92168 0.96348 1.00457 0.88580 0.94291 0.79320 0.90969 0.94743 0.88754 0.93661 0.89146 0.88216 0.87034 0.86147 0.91312 0.92272 0.82891 0.74961 0.75952 0.94594 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 3 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.23 -13.20 9.95 84.03 0.84 -12.37 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -37.96 4.79 -320.41 -1.54 -39.49 16 10 C 0.17 6.42 3.24 45.53 0.15 6.57 16 11 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 12 C -0.14 -4.54 6.56 31.27 0.21 -4.34 16 13 C -0.11 -2.56 5.58 31.61 0.18 -2.38 16 14 C -0.08 -1.62 4.25 -8.62 -0.04 -1.66 16 15 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 16 C 0.10 1.83 5.71 86.71 0.50 2.33 16 17 N -0.62 -17.72 3.32 -813.66 -2.70 -20.43 16 18 C 0.51 15.70 7.85 87.66 0.69 16.39 16 19 O -0.60 -25.09 16.23 -3.01 -0.05 -25.14 16 20 C -0.11 -2.11 4.87 29.85 0.15 -1.96 16 21 C -0.03 -0.66 5.02 29.85 0.15 -0.51 16 22 C -0.19 -3.47 5.42 -19.94 -0.11 -3.57 16 23 C -0.23 -3.69 10.87 22.19 0.24 -3.45 16 24 C -0.04 -0.49 12.09 66.97 0.81 0.32 16 25 O -0.19 -3.01 10.65 -2.54 -0.03 -3.04 16 26 C -0.04 -0.62 12.01 66.97 0.80 0.19 16 27 C 0.12 4.69 4.40 86.68 0.38 5.07 16 28 C -0.10 -3.09 4.03 -8.96 -0.04 -3.12 16 29 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.25 15.60 8.31 -92.70 -0.77 14.83 16 31 H 0.37 21.01 5.33 -92.71 -0.49 20.51 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.03 1.38 7.91 -2.39 -0.02 1.36 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.04 1.25 7.28 -2.39 -0.02 1.23 16 36 H 0.09 1.28 7.83 -2.39 -0.02 1.26 16 37 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 42 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.22 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 46 H 0.05 2.03 6.30 -2.39 -0.02 2.02 16 Total: -1.00 -80.64 370.53 3.84 -76.80 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.48 Total: 31.19 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.37 Total: -6.95 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -3.96 Total: -122.39 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.08 Total: -28.18 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -80.64 3.84 -76.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026235598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.632 kcal (2) G-P(sol) polarization free energy of solvation -80.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds