Wall clock time and date at job start Tue Mar 31 2020 12:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48506 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 299.99681 * 3 2 1 6 6 H 1.48496 * 109.47562 * 59.99868 * 3 2 1 7 7 C 1.38814 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99870 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.47206 * 32.35949 * 10 9 7 12 12 C 1.56007 * 110.52826 * 269.56682 * 10 9 7 13 13 C 1.56335 * 105.76993 * 234.41555 * 12 10 9 14 14 C 1.51561 * 101.81015 * 334.55393 * 13 12 10 15 15 H 1.08996 * 111.53085 * 288.39124 * 14 13 12 16 16 C 1.51519 * 123.35923 * 152.04101 * 14 13 12 17 17 N 1.49633 * 102.48809 * 208.34623 * 16 14 13 18 18 C 1.34779 * 126.06944 * 205.65573 * 17 16 14 19 19 O 1.21279 * 119.99574 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00208 * 0.02562 * 18 17 16 21 21 C 1.52997 * 109.47055 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.47238 * 179.97438 * 21 20 18 23 23 C 1.41381 * 126.57833 * 89.99817 * 22 21 20 24 24 C 1.34511 * 106.84240 * 179.97438 * 23 22 21 25 25 O 1.34305 * 108.42058 * 0.02562 * 24 23 22 26 26 C 1.34305 * 109.47362 * 359.77384 * 25 24 23 27 27 C 1.49280 * 107.85500 * 25.91507 * 17 16 14 28 28 C 1.49652 * 104.71325 * 5.98530 * 27 17 16 29 29 H 1.09005 * 107.62907 * 78.66775 * 28 27 17 30 30 H 0.96998 * 119.99952 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00089 * 359.97438 * 9 7 2 32 32 H 1.08999 * 110.18467 * 353.48400 * 12 10 9 33 33 H 1.09001 * 110.19367 * 115.25908 * 12 10 9 34 34 H 1.09007 * 110.95862 * 216.43385 * 13 12 10 35 35 H 1.08992 * 110.96600 * 92.68610 * 13 12 10 36 36 H 1.09001 * 110.80426 * 90.09810 * 16 14 13 37 37 H 1.08996 * 110.97417 * 326.66936 * 16 14 13 38 38 H 1.09001 * 109.47328 * 60.00147 * 20 18 17 39 39 H 1.09004 * 109.47043 * 299.99957 * 20 18 17 40 40 H 1.09001 * 109.46832 * 59.99966 * 21 20 18 41 41 H 1.09000 * 109.47611 * 300.00263 * 21 20 18 42 42 H 1.08005 * 126.57614 * 359.93496 * 23 22 21 43 43 H 1.07997 * 125.79011 * 179.97438 * 24 23 22 44 44 H 1.08005 * 125.78655 * 180.24194 * 26 25 24 45 45 H 1.08998 * 110.39923 * 124.92458 * 27 17 16 46 46 H 1.09003 * 110.39705 * 247.32335 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0017 11 1 2.9952 -3.5554 0.5489 12 6 2.3231 -4.1367 -1.4589 13 6 1.7474 -5.5879 -1.5403 14 6 1.8223 -6.0330 -0.0935 15 1 2.8518 -6.2097 0.2179 16 6 0.8849 -7.0575 0.5127 17 7 0.8460 -6.6491 1.9516 18 6 0.5756 -7.4544 2.9980 19 8 0.5732 -7.0048 4.1244 20 6 0.2764 -8.9134 2.7685 21 6 0.0071 -9.5962 4.1109 22 6 -0.2927 -11.0552 3.8813 23 6 0.6444 -12.1133 3.8512 24 6 -0.0496 -13.2421 3.6196 25 8 -1.3499 -12.9254 3.5079 26 6 -1.5038 -11.6011 3.6703 27 6 1.1534 -5.1900 2.0218 28 6 1.2196 -4.7465 0.5940 29 1 0.1963 -4.6299 0.2368 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.8085 -3.4876 -2.1673 33 1 3.3936 -4.1433 -1.6643 34 1 2.3694 -6.2191 -2.1750 35 1 0.7160 -5.5791 -1.8926 36 1 1.2904 -8.0638 0.4067 37 1 -0.1066 -6.9923 0.0648 38 1 1.1304 -9.3878 2.2849 39 1 -0.6017 -9.0081 2.1296 40 1 -0.8467 -9.1219 4.5948 41 1 0.8854 -9.5015 4.7495 42 1 1.7127 -12.0310 3.9874 43 1 0.3682 -14.2345 3.5367 44 1 -2.4409 -11.0652 3.6355 45 1 0.3610 -4.6597 2.5498 46 1 2.1130 -5.0271 2.5125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026235599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:48 Heat of formation + Delta-G solvation = -18.309249 kcal Electronic energy + Delta-G solvation = -26070.471655 eV Core-core repulsion = 22347.332075 eV Total energy + Delta-G solvation = -3723.139580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.40398 -41.69566 -39.93513 -36.80443 -35.78876 -35.07276 -32.67347 -32.54585 -31.00167 -29.91235 -29.64038 -27.11969 -25.75759 -24.88798 -23.81510 -22.42619 -21.41770 -21.06711 -20.50053 -20.10724 -19.11731 -18.43864 -17.65086 -17.55592 -16.83860 -16.78838 -16.53777 -15.81984 -15.66710 -15.46963 -15.38547 -15.31727 -14.44137 -14.39288 -13.96766 -13.73326 -13.62528 -13.42748 -13.25926 -13.13434 -13.08067 -12.98707 -12.83480 -12.62679 -12.43445 -12.15250 -12.09447 -11.88945 -11.82931 -11.57027 -11.36548 -11.01789 -10.99587 -10.86382 -10.51048 -9.74404 -9.39704 -8.99493 -7.94639 -5.22455 0.91551 1.46143 1.46971 1.56592 1.61407 1.64419 1.91430 2.36872 2.55668 2.99360 3.39798 3.51404 3.65554 3.92548 3.94138 4.01798 4.03815 4.19482 4.25974 4.28003 4.33643 4.39550 4.44681 4.53421 4.58959 4.61763 4.71900 4.72918 4.77602 4.83068 4.88183 4.94173 5.00378 5.04625 5.14028 5.20843 5.24610 5.25518 5.37754 5.38509 5.48516 5.54042 5.63614 5.63874 6.25945 6.28029 6.51252 7.12285 7.33715 8.10469 8.32517 9.29004 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.002233 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.695558 B =12537.010635 C =13059.832694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.734 5.734 10 C 0.188 3.812 11 H 0.045 0.955 12 C -0.137 4.137 13 C -0.085 4.085 14 C -0.104 4.104 15 H 0.093 0.907 16 C 0.120 3.880 17 N -0.624 5.624 18 C 0.519 3.481 19 O -0.594 6.594 20 C -0.114 4.114 21 C -0.029 4.029 22 C -0.192 4.192 23 C -0.227 4.227 24 C -0.041 4.041 25 O -0.191 6.191 26 C -0.044 4.044 27 C 0.135 3.865 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.157 0.843 43 H 0.233 0.767 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -29.364 0.621 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.373 5.373 10 C 0.079 3.921 11 H 0.063 0.937 12 C -0.178 4.178 13 C -0.123 4.123 14 C -0.124 4.124 15 H 0.112 0.888 16 C -0.001 4.001 17 N -0.359 5.359 18 C 0.310 3.690 19 O -0.475 6.475 20 C -0.153 4.153 21 C -0.067 4.067 22 C -0.193 4.193 23 C -0.246 4.246 24 C -0.108 4.108 25 O -0.087 6.087 26 C -0.112 4.112 27 C 0.012 3.988 28 C -0.143 4.143 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.174 0.826 43 H 0.250 0.750 44 H 0.238 0.762 45 H 0.063 0.937 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.241 -29.272 1.237 29.324 hybrid contribution 0.049 1.989 0.379 2.026 sum 1.290 -27.283 1.616 27.361 Atomic orbital electron populations 1.69822 1.06564 1.25808 1.59949 1.25537 0.96358 1.01022 1.04170 0.85122 0.78337 0.80127 0.76500 1.18970 1.22070 1.22470 1.19662 0.91401 0.85281 1.40293 0.90639 1.42705 1.05271 1.00962 1.88395 1.20236 0.93683 0.83800 0.94426 0.93652 1.23584 1.00630 0.96349 0.97230 1.21764 1.01926 0.94573 0.94030 1.22553 0.99948 0.93183 0.96674 0.88833 1.22009 1.00362 0.99476 0.78213 1.49998 1.69096 1.08671 1.08091 1.21187 0.75353 0.89572 0.82840 1.90693 1.54488 1.77876 1.24489 1.21612 1.05573 0.88142 0.99966 1.19564 1.02388 0.88901 0.95894 1.20498 0.93889 0.96386 1.08545 1.22024 1.01508 0.92312 1.08719 1.24675 0.79927 1.01587 1.04566 1.84088 1.28880 1.25443 1.70294 1.24342 1.00692 0.80625 1.05493 1.20736 0.99853 0.81243 0.96931 1.21855 1.00898 0.97409 0.94185 0.91896 0.94183 0.79651 0.93432 0.91504 0.88790 0.91073 0.86674 0.89600 0.86671 0.86753 0.91430 0.91690 0.82553 0.75049 0.76225 0.93720 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 7 C -0.23 -12.95 9.96 84.03 0.84 -12.12 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -36.53 5.10 -323.01 -1.65 -38.18 16 10 C 0.19 7.06 3.45 44.98 0.16 7.21 16 11 H 0.05 1.78 8.09 -2.39 -0.02 1.76 16 12 C -0.14 -4.24 6.74 32.80 0.22 -4.02 16 13 C -0.08 -1.78 6.62 31.28 0.21 -1.57 16 14 C -0.10 -2.19 3.14 -10.04 -0.03 -2.22 16 15 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 16 C 0.12 2.06 6.48 85.28 0.55 2.61 16 17 N -0.62 -15.91 3.42 -815.21 -2.79 -18.71 16 18 C 0.52 13.81 7.88 87.66 0.69 14.50 16 19 O -0.59 -21.60 16.35 -3.03 -0.05 -21.65 16 20 C -0.11 -1.87 4.74 29.85 0.14 -1.73 16 21 C -0.03 -0.54 5.02 29.85 0.15 -0.39 16 22 C -0.19 -3.08 5.42 -19.94 -0.11 -3.19 16 23 C -0.23 -3.18 10.87 22.19 0.24 -2.94 16 24 C -0.04 -0.47 12.09 66.97 0.81 0.34 16 25 O -0.19 -2.91 10.65 -2.53 -0.03 -2.93 16 26 C -0.04 -0.63 12.01 66.97 0.80 0.17 16 27 C 0.13 4.38 6.82 84.77 0.58 4.96 16 28 C -0.12 -3.85 2.19 -11.21 -0.02 -3.87 16 29 H 0.06 2.12 7.75 -2.38 -0.02 2.10 16 30 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.37 20.08 7.66 -92.71 -0.71 19.37 16 32 H 0.05 1.73 7.98 -2.39 -0.02 1.71 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.18 7.58 -2.39 -0.02 1.17 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.42 7.91 -2.39 -0.02 1.41 16 39 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 41 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.23 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.99 376.99 3.74 -71.24 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.26 Total: 27.56 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.69 Total: -6.36 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.16 Total: -116.49 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.08 Total: -24.59 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -74.99 3.74 -71.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026235599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.934 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds