Wall clock time and date at job start Tue Mar 31 2020 12:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48502 * 109.46990 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46750 * 30.00347 * 3 2 1 6 6 H 1.48498 * 109.47041 * 150.00643 * 3 2 1 7 7 C 1.38809 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.47091 * 32.36269 * 10 9 7 12 12 C 1.56003 * 110.52512 * 269.56761 * 10 9 7 13 13 C 1.56341 * 105.77135 * 248.33394 * 12 10 9 14 14 C 1.51558 * 101.81176 * 25.44118 * 13 12 10 15 15 H 1.09006 * 111.54475 * 71.63177 * 14 13 12 16 16 C 1.51526 * 123.34596 * 207.98012 * 14 13 12 17 17 N 1.49623 * 102.49670 * 151.63479 * 16 14 13 18 18 C 1.34773 * 126.06973 * 154.35079 * 17 16 14 19 19 O 1.21286 * 119.99746 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00408 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47306 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.46866 * 180.02562 * 21 20 18 23 23 C 1.41384 * 126.57573 * 269.71344 * 22 21 20 24 24 C 1.34519 * 106.83686 * 179.83804 * 23 22 21 25 25 O 1.34302 * 108.41962 * 0.42907 * 24 23 22 26 26 C 1.34302 * 109.47812 * 359.72214 * 25 24 23 27 27 C 1.49285 * 107.85660 * 334.35150 * 17 16 14 28 28 C 1.49709 * 110.52163 * 155.00574 * 10 9 7 29 29 H 1.09004 * 107.87007 * 196.35199 * 28 10 9 30 30 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.08997 * 110.19097 * 7.41081 * 12 10 9 33 33 H 1.08997 * 110.18840 * 129.18611 * 12 10 9 34 34 H 1.09002 * 110.96059 * 267.31327 * 13 12 10 35 35 H 1.08996 * 110.95619 * 143.56742 * 13 12 10 36 36 H 1.09003 * 110.79888 * 269.88770 * 16 14 13 37 37 H 1.08999 * 110.80168 * 33.37884 * 16 14 13 38 38 H 1.08994 * 109.47274 * 299.99959 * 20 18 17 39 39 H 1.08999 * 109.46935 * 59.99752 * 20 18 17 40 40 H 1.08994 * 109.47300 * 300.00407 * 21 20 18 41 41 H 1.08999 * 109.46947 * 60.00223 * 21 20 18 42 42 H 1.07996 * 126.58351 * 359.97438 * 23 22 21 43 43 H 1.08000 * 125.79121 * 180.11725 * 24 23 22 44 44 H 1.08004 * 125.79059 * 179.97438 * 26 25 24 45 45 H 1.09003 * 110.39740 * 112.41319 * 27 17 16 46 46 H 1.08995 * 110.39872 * 234.69803 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3221 -4.1360 -1.4615 13 6 1.4445 -5.4154 -1.6541 14 6 0.3400 -5.1894 -0.6412 15 1 -0.3368 -4.3955 -0.9574 16 6 -0.4171 -6.3167 0.0311 17 7 -0.8095 -5.7076 1.3402 18 6 -1.8648 -6.0666 2.0978 19 8 -2.0811 -5.4956 3.1458 20 6 -2.7759 -7.1775 1.6430 21 6 -3.8844 -7.3836 2.6771 22 6 -4.7952 -8.4949 2.2225 23 6 -5.9566 -8.3604 1.4276 24 6 -6.4587 -9.5969 1.2590 25 8 -5.6727 -10.4671 1.9138 26 6 -4.6623 -9.8044 2.5000 27 6 0.1753 -4.6316 1.6580 28 6 1.2200 -4.7467 0.5919 29 1 1.8797 -5.5778 0.8415 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.0226 -3.3642 -2.1705 33 1 3.3766 -4.3785 -1.5931 34 1 2.0113 -6.3162 -1.4185 35 1 1.0418 -5.4633 -2.6659 36 1 -1.2988 -6.5905 -0.5484 37 1 0.2302 -7.1802 0.1844 38 1 -3.2188 -6.9138 0.6827 39 1 -2.2018 -8.0981 1.5378 40 1 -3.4412 -7.6474 3.6373 41 1 -4.4585 -6.4631 2.7827 42 1 -6.3616 -7.4416 1.0301 43 1 -7.3465 -9.8470 0.6970 44 1 -3.8766 -10.2476 3.0938 45 1 -0.3040 -3.6535 1.6161 46 1 0.6142 -4.7968 2.6419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026235601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:55 Heat of formation + Delta-G solvation = 2.807650 kcal Electronic energy + Delta-G solvation = -26415.956905 eV Core-core repulsion = 22693.733022 eV Total energy + Delta-G solvation = -3722.223882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76540 -40.47853 -38.68414 -35.25095 -34.92454 -33.29845 -31.72156 -30.83715 -29.90307 -28.87776 -28.42895 -25.66990 -24.70861 -23.33775 -22.60044 -21.81623 -20.40708 -20.02223 -18.98650 -18.76745 -17.72913 -17.42271 -16.51512 -16.22618 -16.06258 -15.62035 -14.94777 -14.66804 -14.54286 -14.34322 -14.16420 -13.59267 -13.41227 -13.01948 -12.89085 -12.68929 -12.58641 -12.48669 -12.37495 -11.98613 -11.79238 -11.41443 -11.21030 -11.06406 -10.95313 -10.81893 -10.68612 -10.45809 -10.28239 -10.08854 -9.94530 -9.73736 -9.59005 -9.49775 -8.91524 -8.76377 -8.46310 -6.97330 -5.77033 -3.06197 1.53226 2.34583 2.81116 2.91179 3.06329 3.43360 3.48818 3.50636 4.20247 4.48057 4.57461 4.59013 4.74107 4.92143 4.96683 5.00013 5.08635 5.19840 5.33140 5.37340 5.43351 5.49945 5.52629 5.56705 5.58917 5.64963 5.81719 5.84565 5.84787 5.93444 5.98844 6.01764 6.05899 6.19058 6.28503 6.29705 6.30830 6.38473 6.47452 6.54447 6.66432 6.81685 6.88476 7.04183 7.68380 7.70660 8.32819 8.41112 9.52503 10.09081 10.43671 11.45279 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002573 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.230132 B =10880.739077 C =11583.312601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.057 0.943 12 C -0.145 4.145 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.093 0.907 16 C 0.117 3.883 17 N -0.624 5.624 18 C 0.525 3.475 19 O -0.544 6.544 20 C -0.128 4.128 21 C -0.036 4.036 22 C -0.175 4.175 23 C -0.208 4.208 24 C -0.045 4.045 25 O -0.180 6.180 26 C -0.043 4.043 27 C 0.132 3.868 28 C -0.120 4.120 29 H 0.067 0.933 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.201 0.799 44 H 0.201 0.799 45 H 0.083 0.917 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -21.947 -0.533 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.136 4.136 14 C -0.144 4.144 15 H 0.112 0.888 16 C -0.005 4.005 17 N -0.359 5.359 18 C 0.314 3.686 19 O -0.422 6.422 20 C -0.168 4.168 21 C -0.074 4.074 22 C -0.176 4.176 23 C -0.227 4.227 24 C -0.113 4.113 25 O -0.076 6.076 26 C -0.110 4.110 27 C 0.011 3.989 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.166 0.834 43 H 0.218 0.782 44 H 0.218 0.782 45 H 0.102 0.898 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.034 -21.816 0.140 22.922 hybrid contribution 0.170 1.177 -0.242 1.214 sum -6.864 -20.639 -0.102 21.750 Atomic orbital electron populations 1.69656 1.05094 1.25694 1.57501 1.24742 0.95480 0.97684 1.02932 0.86215 0.78682 0.83992 0.77433 1.21803 1.21828 1.20776 1.19245 0.91000 0.84102 1.42843 0.91132 1.42432 1.05712 0.99576 1.88158 1.20052 0.94005 0.85315 0.92245 0.92543 1.23862 0.97939 0.96142 1.00671 1.21809 0.95612 0.98550 0.97631 1.22620 0.97261 0.98119 0.96440 0.88846 1.21771 0.99119 0.95762 0.83811 1.49888 1.27436 1.36735 1.21870 1.20300 0.80308 0.84359 0.83676 1.90717 1.72133 1.55670 1.23640 1.21608 0.96496 0.97719 1.00936 1.19711 0.93826 0.96064 0.97766 1.20535 0.98791 0.95046 1.03277 1.21828 0.98046 0.98702 1.04100 1.24020 0.98100 0.88039 1.01099 1.84061 1.32499 1.37951 1.53042 1.23899 0.93342 0.91386 1.02392 1.20930 0.89061 0.91356 0.97559 1.22049 0.96496 1.00818 0.94653 0.91486 0.93493 0.78122 0.90598 0.92862 0.92004 0.92083 0.90746 0.91207 0.88944 0.89212 0.90310 0.90008 0.83394 0.78237 0.78232 0.89848 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.14 4.85 -53.45 -0.26 -17.40 16 10 C 0.20 3.63 3.47 -67.95 -0.24 3.39 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.15 -2.33 6.74 -23.33 -0.16 -2.49 16 13 C -0.10 -1.24 6.61 -25.67 -0.17 -1.41 16 14 C -0.13 -1.74 3.07 -89.45 -0.27 -2.01 16 15 H 0.09 1.56 7.88 -51.93 -0.41 1.15 16 16 C 0.12 1.36 6.49 -3.05 -0.02 1.34 16 17 N -0.62 -9.22 3.43 -171.57 -0.59 -9.81 16 18 C 0.52 7.96 7.88 -10.99 -0.09 7.87 16 19 O -0.54 -10.45 16.35 5.55 0.09 -10.36 16 20 C -0.13 -1.37 4.74 -27.88 -0.13 -1.50 16 21 C -0.04 -0.39 5.02 -27.88 -0.14 -0.53 16 22 C -0.18 -1.72 5.42 -104.74 -0.57 -2.29 16 23 C -0.21 -1.90 10.87 -39.70 -0.43 -2.33 16 24 C -0.05 -0.36 12.09 29.42 0.36 0.00 16 25 O -0.18 -1.67 10.65 5.72 0.06 -1.61 16 26 C -0.04 -0.37 12.01 29.41 0.35 -0.02 16 27 C 0.13 2.27 6.67 -4.12 -0.03 2.24 16 28 C -0.12 -1.88 2.25 -91.23 -0.21 -2.09 16 29 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 9.89 6.73 -40.82 -0.27 9.61 16 32 H 0.08 1.42 7.98 -51.93 -0.41 1.00 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 42 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.20 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.08 1.73 7.22 -51.93 -0.37 1.36 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -32.79 374.72 -8.64 -41.42 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.30 Total: 8.97 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.98 Total: -6.90 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.12 Total: -54.41 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.15 Total: -11.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.79 -8.64 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026235601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.232 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds