Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48502 * 109.46990 * 270.00417 * 3 2 1 5 5 H 1.48502 * 109.46750 * 30.00347 * 3 2 1 6 6 H 1.48498 * 109.47041 * 150.00643 * 3 2 1 7 7 C 1.38809 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.47091 * 32.36269 * 10 9 7 12 12 C 1.56003 * 110.52512 * 269.56761 * 10 9 7 13 13 C 1.56341 * 105.77135 * 248.33394 * 12 10 9 14 14 C 1.51558 * 101.81176 * 25.44118 * 13 12 10 15 15 H 1.09006 * 111.54475 * 71.63177 * 14 13 12 16 16 C 1.51526 * 123.34596 * 207.98012 * 14 13 12 17 17 N 1.49623 * 102.49670 * 151.63479 * 16 14 13 18 18 C 1.34773 * 126.06973 * 154.35079 * 17 16 14 19 19 O 1.21286 * 119.99746 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00408 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47306 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.46866 * 180.02562 * 21 20 18 23 23 C 1.41384 * 126.57573 * 269.71344 * 22 21 20 24 24 C 1.34519 * 106.83686 * 179.83804 * 23 22 21 25 25 O 1.34302 * 108.41962 * 0.42907 * 24 23 22 26 26 C 1.34302 * 109.47812 * 359.72214 * 25 24 23 27 27 C 1.49285 * 107.85660 * 334.35150 * 17 16 14 28 28 C 1.49709 * 110.52163 * 155.00574 * 10 9 7 29 29 H 1.09004 * 107.87007 * 196.35199 * 28 10 9 30 30 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.08997 * 110.19097 * 7.41081 * 12 10 9 33 33 H 1.08997 * 110.18840 * 129.18611 * 12 10 9 34 34 H 1.09002 * 110.96059 * 267.31327 * 13 12 10 35 35 H 1.08996 * 110.95619 * 143.56742 * 13 12 10 36 36 H 1.09003 * 110.79888 * 269.88770 * 16 14 13 37 37 H 1.08999 * 110.80168 * 33.37884 * 16 14 13 38 38 H 1.08994 * 109.47274 * 299.99959 * 20 18 17 39 39 H 1.08999 * 109.46935 * 59.99752 * 20 18 17 40 40 H 1.08994 * 109.47300 * 300.00407 * 21 20 18 41 41 H 1.08999 * 109.46947 * 60.00223 * 21 20 18 42 42 H 1.07996 * 126.58351 * 359.97438 * 23 22 21 43 43 H 1.08000 * 125.79121 * 180.11725 * 24 23 22 44 44 H 1.08004 * 125.79059 * 179.97438 * 26 25 24 45 45 H 1.09003 * 110.39740 * 112.41319 * 27 17 16 46 46 H 1.08995 * 110.39872 * 234.69803 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3221 -4.1360 -1.4615 13 6 1.4445 -5.4154 -1.6541 14 6 0.3400 -5.1894 -0.6412 15 1 -0.3368 -4.3955 -0.9574 16 6 -0.4171 -6.3167 0.0311 17 7 -0.8095 -5.7076 1.3402 18 6 -1.8648 -6.0666 2.0978 19 8 -2.0811 -5.4956 3.1458 20 6 -2.7759 -7.1775 1.6430 21 6 -3.8844 -7.3836 2.6771 22 6 -4.7952 -8.4949 2.2225 23 6 -5.9566 -8.3604 1.4276 24 6 -6.4587 -9.5969 1.2590 25 8 -5.6727 -10.4671 1.9138 26 6 -4.6623 -9.8044 2.5000 27 6 0.1753 -4.6316 1.6580 28 6 1.2200 -4.7467 0.5919 29 1 1.8797 -5.5778 0.8415 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.0226 -3.3642 -2.1705 33 1 3.3766 -4.3785 -1.5931 34 1 2.0113 -6.3162 -1.4185 35 1 1.0418 -5.4633 -2.6659 36 1 -1.2988 -6.5905 -0.5484 37 1 0.2302 -7.1802 0.1844 38 1 -3.2188 -6.9138 0.6827 39 1 -2.2018 -8.0981 1.5378 40 1 -3.4412 -7.6474 3.6373 41 1 -4.4585 -6.4631 2.7827 42 1 -6.3616 -7.4416 1.0301 43 1 -7.3465 -9.8470 0.6970 44 1 -3.8766 -10.2476 3.0938 45 1 -0.3040 -3.6535 1.6161 46 1 0.6142 -4.7968 2.6419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026235601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = -17.654596 kcal Electronic energy + Delta-G solvation = -26416.844214 eV Core-core repulsion = 22693.733022 eV Total energy + Delta-G solvation = -3723.111192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.40873 -41.71173 -39.94303 -36.68805 -35.79179 -35.03291 -32.58995 -32.53670 -30.95329 -29.93341 -29.66230 -27.09024 -25.74113 -25.15873 -23.81079 -22.43566 -21.20105 -21.04906 -20.26433 -20.07465 -19.38208 -18.44577 -17.58661 -17.45467 -16.85961 -16.76185 -16.47168 -15.85346 -15.71980 -15.53423 -15.37813 -15.09575 -14.71630 -14.41316 -13.84047 -13.66792 -13.64293 -13.40874 -13.32161 -13.20004 -13.02332 -12.90505 -12.81279 -12.59907 -12.32514 -12.22821 -12.03989 -11.89708 -11.85378 -11.49331 -11.38004 -11.02599 -10.89112 -10.85920 -10.51712 -9.70892 -9.40009 -8.97734 -7.93425 -5.20764 0.91283 1.45532 1.47089 1.55268 1.62247 1.64377 1.94055 2.36019 2.56293 3.02977 3.40772 3.52286 3.74942 3.91535 3.95195 4.02057 4.08298 4.19027 4.20449 4.27311 4.33178 4.40907 4.48125 4.51997 4.60678 4.67393 4.72475 4.74715 4.82204 4.87007 4.88621 4.97154 5.06333 5.08542 5.14461 5.23590 5.24648 5.25056 5.37482 5.41101 5.45667 5.54534 5.61767 5.69794 6.24971 6.28977 6.53746 7.14106 7.34656 8.13228 8.34371 9.30128 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002573 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.230132 B =10880.739077 C =11583.312601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.731 5.731 10 C 0.181 3.819 11 H 0.051 0.949 12 C -0.139 4.139 13 C -0.082 4.082 14 C -0.114 4.114 15 H 0.055 0.945 16 C 0.122 3.878 17 N -0.625 5.625 18 C 0.517 3.483 19 O -0.596 6.596 20 C -0.112 4.112 21 C -0.029 4.029 22 C -0.194 4.194 23 C -0.231 4.231 24 C -0.038 4.038 25 O -0.189 6.189 26 C -0.039 4.039 27 C 0.135 3.865 28 C -0.122 4.122 29 H 0.101 0.899 30 H 0.248 0.752 31 H 0.371 0.629 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.151 0.849 43 H 0.233 0.767 44 H 0.227 0.773 45 H 0.032 0.968 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 -25.563 -1.896 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.370 5.370 10 C 0.072 3.928 11 H 0.069 0.931 12 C -0.179 4.179 13 C -0.120 4.120 14 C -0.133 4.133 15 H 0.073 0.927 16 C 0.002 3.998 17 N -0.359 5.359 18 C 0.308 3.692 19 O -0.478 6.478 20 C -0.152 4.152 21 C -0.067 4.067 22 C -0.195 4.195 23 C -0.251 4.251 24 C -0.105 4.105 25 O -0.085 6.085 26 C -0.106 4.106 27 C 0.013 3.987 28 C -0.142 4.142 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.169 0.831 43 H 0.250 0.750 44 H 0.243 0.757 45 H 0.051 0.949 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.004 -25.495 -1.262 26.223 hybrid contribution -0.111 2.273 0.217 2.286 sum -6.115 -23.222 -1.045 24.036 Atomic orbital electron populations 1.69830 1.06671 1.25744 1.60123 1.25530 0.96264 1.01050 1.04357 0.85191 0.77711 0.79853 0.77349 1.21417 1.22811 1.19372 1.19661 0.91460 0.85305 1.40054 0.90438 1.42620 1.05263 1.00875 1.88291 1.20406 0.93795 0.84101 0.94475 0.93117 1.23655 1.00051 0.97079 0.97153 1.21762 0.94389 0.97850 0.97952 1.22560 0.96821 0.98078 0.95843 0.92677 1.22027 1.00613 0.95400 0.81746 1.49996 1.26830 1.35945 1.23095 1.21211 0.80326 0.84757 0.82944 1.90691 1.73320 1.57636 1.26110 1.21600 0.95629 0.96947 1.01001 1.19556 0.93854 0.95549 0.97785 1.20490 0.99293 0.95218 1.04530 1.22029 0.98477 0.99606 1.04942 1.24633 0.98364 0.87353 1.00183 1.84084 1.32775 1.38397 1.53195 1.24363 0.93465 0.91002 1.01775 1.20674 0.89859 0.90137 0.98066 1.21906 0.96694 1.00495 0.95079 0.88116 0.94347 0.79729 0.93899 0.90725 0.88245 0.90697 0.88138 0.87463 0.87603 0.85977 0.90883 0.92436 0.83138 0.75038 0.75702 0.94917 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 3 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.23 -12.87 9.96 84.03 0.84 -12.03 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -36.25 4.85 -323.01 -1.57 -37.82 16 10 C 0.18 6.70 3.47 44.98 0.16 6.86 16 11 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 12 C -0.14 -4.21 6.74 32.80 0.22 -3.99 16 13 C -0.08 -1.75 6.61 31.28 0.21 -1.55 16 14 C -0.11 -2.91 3.07 -10.04 -0.03 -2.94 16 15 H 0.05 1.85 7.88 -2.38 -0.02 1.83 16 16 C 0.12 2.38 6.49 85.29 0.55 2.94 16 17 N -0.62 -17.90 3.43 -815.11 -2.79 -20.69 16 18 C 0.52 15.55 7.88 87.66 0.69 16.24 16 19 O -0.60 -23.95 16.35 -3.05 -0.05 -24.00 16 20 C -0.11 -2.19 4.74 29.85 0.14 -2.05 16 21 C -0.03 -0.62 5.02 29.85 0.15 -0.47 16 22 C -0.19 -3.53 5.42 -19.94 -0.11 -3.64 16 23 C -0.23 -3.93 10.87 22.19 0.24 -3.69 16 24 C -0.04 -0.52 12.09 66.97 0.81 0.29 16 25 O -0.19 -3.04 10.65 -2.46 -0.03 -3.07 16 26 C -0.04 -0.58 12.01 66.97 0.80 0.22 16 27 C 0.14 4.79 6.67 84.78 0.57 5.35 16 28 C -0.12 -3.69 2.25 -11.19 -0.03 -3.72 16 29 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 20.28 6.73 -92.70 -0.62 19.65 16 32 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.51 7.58 -2.39 -0.02 1.50 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 1.83 7.91 -2.39 -0.02 1.81 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 43 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.03 1.47 7.22 -2.39 -0.02 1.46 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -77.20 374.72 3.90 -73.30 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.35 Total: 30.43 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.68 Total: -6.39 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.08 Total: -119.33 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.08 Total: -27.06 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -77.20 3.90 -73.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026235601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.649 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds