Wall clock time and date at job start Tue Mar 31 2020 12:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48496 * 109.46847 * 239.99932 * 3 2 1 5 5 H 1.48503 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47428 * 119.99641 * 3 2 1 7 7 C 1.38817 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99726 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00155 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47381 * 274.99782 * 10 9 7 12 12 C 1.52997 * 109.47592 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47165 * 60.00300 * 12 11 10 14 14 N 1.46500 * 109.47249 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99474 * 274.99290 * 14 13 12 16 16 O 1.21274 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99489 * 179.97438 * 15 14 13 18 18 H 1.09000 * 115.55216 * 34.33159 * 17 15 14 19 19 C 1.53008 * 117.49681 * 248.62401 * 17 15 14 20 20 C 1.52998 * 60.00129 * 252.51268 * 19 17 15 21 21 H 1.09000 * 117.49736 * 107.48867 * 20 19 17 22 22 C 1.50704 * 117.50181 * 252.51248 * 20 19 17 23 23 C 1.34512 * 125.78937 * 188.33489 * 22 20 19 24 24 C 1.41382 * 106.83928 * 179.88610 * 23 22 20 25 25 C 1.34516 * 106.83892 * 0.37834 * 24 23 22 26 26 O 1.34300 * 125.78614 * 8.64883 * 22 20 19 27 27 C 1.53002 * 109.46972 * 300.00293 * 13 12 11 28 28 C 1.52997 * 109.47415 * 59.99860 * 27 13 12 29 29 H 0.96993 * 120.00025 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99882 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47152 * 35.00006 * 10 9 7 32 32 H 1.09000 * 109.47160 * 300.00219 * 11 10 9 33 33 H 1.09002 * 109.46719 * 59.99939 * 11 10 9 34 34 H 1.09000 * 109.47140 * 300.00346 * 12 11 10 35 35 H 1.09001 * 109.47375 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47134 * 59.99508 * 13 12 11 37 37 H 0.96992 * 120.00233 * 95.00296 * 14 13 12 38 38 H 1.08997 * 117.49868 * 0.02562 * 19 17 15 39 39 H 1.09007 * 117.49645 * 145.02439 * 19 17 15 40 40 H 1.07997 * 126.57957 * 0.03427 * 23 22 20 41 41 H 1.08003 * 126.58028 * 180.16454 * 24 23 22 42 42 H 1.08001 * 125.78574 * 179.74258 * 25 24 23 43 43 H 1.09000 * 109.46986 * 299.99742 * 27 13 12 44 44 H 1.09001 * 109.47601 * 180.02562 * 27 13 12 45 45 H 1.09001 * 109.46922 * 180.02562 * 28 27 13 46 46 H 1.09000 * 109.47140 * 59.99976 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.4230 -4.0363 -1.4349 12 6 3.1885 -5.3610 -1.4337 13 6 2.3114 -6.4564 -0.8241 14 7 3.0446 -7.7247 -0.8224 15 6 3.0372 -8.5087 -1.9186 16 8 2.4239 -8.1641 -2.9065 17 6 3.7919 -9.8131 -1.9171 18 1 3.8161 -10.3412 -0.9638 19 6 5.0277 -9.9153 -2.8134 20 6 3.7448 -10.6580 -3.1918 21 1 3.1679 -10.2704 -4.0315 22 6 3.7358 -12.1567 -3.0334 23 6 2.7668 -12.9869 -3.4590 24 6 3.1658 -14.2967 -3.1068 25 6 4.3508 -14.1877 -2.4796 26 8 4.6911 -12.8892 -2.4380 27 6 1.9464 -6.0769 0.6125 28 6 1.1809 -4.7522 0.6113 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.9683 -3.5503 0.5918 32 1 1.5128 -4.1428 -2.0250 33 1 3.0483 -3.2561 -1.8690 34 1 4.0988 -5.2541 -0.8437 35 1 3.4489 -5.6311 -2.4571 36 1 1.4011 -6.5632 -1.4140 37 1 3.5353 -8.0002 -0.0324 38 1 5.2951 -9.0389 -3.4038 39 1 5.8653 -10.5106 -2.4497 40 1 1.8594 -12.7069 -3.9734 41 1 2.6218 -15.2093 -3.3008 42 1 4.9300 -15.0057 -2.0773 43 1 2.8567 -5.9700 1.2025 44 1 1.3219 -6.8574 1.0471 45 1 0.9213 -4.4817 1.6348 46 1 0.2706 -4.8591 0.0213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026565167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:55 Heat of formation + Delta-G solvation = 0.788751 kcal Electronic energy + Delta-G solvation = -25682.561263 eV Core-core repulsion = 21960.249835 eV Total energy + Delta-G solvation = -3722.311428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.93614 -40.28323 -38.33832 -36.67971 -34.83390 -33.33797 -33.01872 -30.70978 -30.40200 -29.84093 -27.57491 -24.79319 -23.56725 -23.29005 -22.33872 -22.02682 -21.02518 -20.49795 -20.22496 -19.39988 -18.03854 -17.40424 -16.92251 -16.38987 -16.15346 -15.39825 -15.24132 -14.82253 -14.66474 -13.99477 -13.76072 -13.62064 -13.48213 -13.16208 -13.04907 -12.99778 -12.83217 -12.55679 -12.29765 -12.02883 -11.81363 -11.49522 -11.31991 -11.07746 -10.91064 -10.79300 -10.75712 -10.66357 -10.24036 -10.20393 -10.10323 -9.94007 -9.75374 -9.56992 -8.98912 -8.83292 -8.70529 -6.92496 -5.73791 -3.02257 1.28396 2.18546 2.40820 2.55359 3.03765 3.45393 3.49825 3.50801 3.52172 4.09071 4.28325 4.42514 4.59725 4.62096 4.70561 4.76964 4.90731 4.94461 5.05105 5.25245 5.28816 5.43603 5.49375 5.53599 5.57866 5.61720 5.67961 5.69023 5.73916 5.75314 5.85923 5.88486 6.03364 6.14022 6.24748 6.27326 6.30991 6.48731 6.57695 6.65823 6.73639 6.78299 7.00220 7.16540 7.42696 7.71984 8.13130 8.45113 9.55863 10.14690 10.49189 11.48903 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.041147 B = 0.001929 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.329040 B =14513.649884 C =14679.905513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.132 4.132 12 C -0.123 4.123 13 C 0.145 3.855 14 N -0.719 5.719 15 C 0.542 3.458 16 O -0.537 6.537 17 C -0.175 4.175 18 H 0.126 0.874 19 C -0.137 4.137 20 C -0.049 4.049 21 H 0.149 0.851 22 C 0.017 3.983 23 C -0.200 4.200 24 C -0.212 4.212 25 C -0.043 4.043 26 O -0.176 6.176 27 C -0.119 4.119 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.399 0.601 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.203 0.797 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -29.072 -2.547 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.173 4.173 12 C -0.162 4.162 13 C 0.041 3.959 14 N -0.369 5.369 15 C 0.328 3.672 16 O -0.414 6.414 17 C -0.197 4.197 18 H 0.144 0.856 19 C -0.174 4.174 20 C -0.067 4.067 21 H 0.166 0.834 22 C -0.033 4.033 23 C -0.219 4.219 24 C -0.231 4.231 25 C -0.111 4.111 26 O -0.073 6.073 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.220 0.780 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.465 -28.515 -3.106 30.205 hybrid contribution 0.194 0.528 0.329 0.652 sum 9.659 -27.987 -2.776 29.737 Atomic orbital electron populations 1.69651 1.05081 1.25700 1.57771 1.24742 0.95509 0.97650 1.03160 0.86283 0.78519 0.83680 0.77797 1.21326 1.21729 1.21332 1.19198 0.90933 0.84180 1.42561 0.91291 1.42418 1.05784 0.99781 1.88572 1.20237 0.94279 0.85981 0.92782 1.22226 0.99770 0.94490 1.00835 1.21891 0.98576 0.95374 1.00384 1.21143 0.95450 0.81708 0.97577 1.46071 1.53042 1.21767 1.15998 1.19464 0.80476 0.84083 0.83175 1.90724 1.43567 1.73785 1.33295 1.22409 1.03201 0.96827 0.97221 0.85591 1.23098 0.90905 1.02649 1.00761 1.20492 1.03290 0.83761 0.99197 0.83378 1.21356 0.89111 0.92308 1.00490 1.21589 1.01249 0.92369 1.06707 1.21864 0.97859 0.98606 1.04807 1.24032 0.98508 0.83619 1.04912 1.83968 1.43216 1.18031 1.62038 1.21749 1.00849 0.98290 0.94833 1.21755 0.98949 0.93452 1.01788 0.93512 0.78304 0.93626 0.92492 0.91804 0.92300 0.92414 0.89414 0.76731 0.87075 0.87090 0.83236 0.83351 0.78022 0.91548 0.91888 0.91349 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.13 5.12 -53.43 -0.27 -18.41 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 12 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 13 C 0.14 1.89 2.45 -67.93 -0.17 1.72 16 14 N -0.72 -7.57 5.08 -53.81 -0.27 -7.84 16 15 C 0.54 6.41 7.58 -10.98 -0.08 6.33 16 16 O -0.54 -8.49 15.92 5.56 0.09 -8.40 16 17 C -0.18 -1.53 5.89 -91.77 -0.54 -2.08 16 18 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.14 -1.06 9.87 -26.73 -0.26 -1.32 16 20 C -0.05 -0.44 5.75 -91.77 -0.53 -0.97 16 21 H 0.15 1.44 7.67 -51.93 -0.40 1.04 16 22 C 0.02 0.16 6.80 -35.62 -0.24 -0.08 16 23 C -0.20 -1.79 10.81 -39.70 -0.43 -2.22 16 24 C -0.21 -1.59 10.91 -39.70 -0.43 -2.02 16 25 C -0.04 -0.30 12.09 29.42 0.36 0.06 16 26 O -0.18 -1.57 10.36 5.72 0.06 -1.51 16 27 C -0.12 -1.45 5.39 -26.73 -0.14 -1.59 16 28 C -0.12 -1.92 5.39 -26.73 -0.14 -2.06 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 31 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 37 H 0.40 3.03 8.60 -40.82 -0.35 2.68 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 0.73 7.96 -51.92 -0.41 0.32 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.20 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.30 381.96 -9.63 -42.92 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.34 Total: 10.37 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -3.35 Total: -12.75 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.18 Total: -53.87 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.15 Total: -9.92 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.30 -9.63 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026565167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.711 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds