Wall clock time and date at job start Tue Mar 31 2020 12:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46239 * 107.53207 * 109.56848 * 10 9 7 12 12 C 1.52524 * 114.27600 * 58.40879 * 11 10 9 13 13 C 1.50127 * 105.41056 * 270.58974 * 12 11 10 14 14 C 1.54842 * 110.81178 * 97.68840 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34060 * 14 13 12 16 16 N 1.46507 * 109.35899 * 200.92182 * 14 13 12 17 17 C 1.34768 * 120.00354 * 204.99812 * 16 14 13 18 18 O 1.21617 * 119.99831 * 0.02562 * 17 16 14 19 19 C 1.47379 * 120.00320 * 180.02562 * 17 16 14 20 20 C 1.47027 * 127.18751 * 0.02707 * 19 17 16 21 21 C 1.34176 * 105.95086 * 179.97438 * 20 19 17 22 22 O 1.34217 * 109.12698 * 0.02562 * 21 20 19 23 23 C 1.33655 * 110.90488 * 359.72711 * 22 21 20 24 24 C 1.50700 * 125.80071 * 180.29060 * 23 22 21 25 25 C 1.53005 * 117.49698 * 8.92720 * 24 23 22 26 26 C 1.53009 * 117.49532 * 300.27211 * 24 23 22 27 27 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 28 28 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 29 29 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 30 30 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 31 31 H 1.08999 * 108.51819 * 179.65126 * 11 10 9 32 32 H 1.08994 * 108.51986 * 297.32066 * 11 10 9 33 33 H 1.08992 * 110.25202 * 29.56275 * 12 11 10 34 34 H 1.08998 * 110.24544 * 151.47978 * 12 11 10 35 35 H 1.09003 * 109.20533 * 218.02647 * 13 12 11 36 36 H 1.08999 * 109.21472 * 337.34360 * 13 12 11 37 37 H 0.97006 * 119.99320 * 25.00409 * 16 14 13 38 38 H 1.07994 * 127.02328 * 359.97438 * 20 19 17 39 39 H 1.08005 * 125.43628 * 179.97438 * 21 20 19 40 40 H 1.08998 * 115.55142 * 154.59930 * 24 23 22 41 41 H 1.08995 * 117.49942 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49682 * 145.02448 * 25 24 23 43 43 H 1.09007 * 117.49409 * 214.98020 * 26 24 23 44 44 H 1.08993 * 117.49650 * 359.97438 * 26 24 23 45 45 H 1.08998 * 108.16066 * 33.30621 * 27 9 7 46 46 H 1.09004 * 108.15966 * 149.87646 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4752 -4.2700 1.0126 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1135 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9485 -5.3019 -1.4245 19 6 3.7962 -4.1955 -3.4729 20 6 3.1364 -3.3310 -4.4623 21 6 3.9675 -3.2734 -5.5141 22 8 5.0560 -4.0148 -5.2557 23 6 4.9781 -4.5695 -4.0422 24 6 6.0178 -5.4595 -3.4112 25 6 7.3628 -5.5927 -4.1283 26 6 6.3710 -6.7586 -4.1384 27 6 2.1840 -3.5379 0.6658 28 1 -0.4850 -0.8349 -0.0928 29 1 0.7234 -2.4530 2.7206 30 1 0.2089 -0.9925 1.8346 31 1 -1.5417 -2.6551 1.9211 32 1 -0.9968 -2.3364 0.2689 33 1 0.2635 -4.6388 1.7241 34 1 -1.4100 -4.8200 1.1209 35 1 -0.3694 -5.2943 -0.8471 36 1 -0.2633 -3.5249 -0.9670 37 1 1.5691 -3.5331 -2.2918 38 1 2.1786 -2.8422 -4.3628 39 1 3.7887 -2.7194 -6.4239 40 1 6.0247 -5.4748 -2.3214 41 1 7.4958 -5.0363 -5.0560 42 1 8.2546 -5.6960 -3.5101 43 1 6.6106 -7.6285 -3.5268 44 1 5.8510 -6.9696 -5.0728 45 1 3.2404 -3.3972 0.4372 46 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034369251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:19 Heat of formation + Delta-G solvation = 35.354453 kcal Electronic energy + Delta-G solvation = -27833.324569 eV Core-core repulsion = 24112.512022 eV Total energy + Delta-G solvation = -3720.812547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.52189 -39.32236 -37.84487 -37.12577 -34.39507 -33.31074 -32.77846 -31.06822 -29.96108 -29.58212 -26.14622 -24.61611 -23.56785 -22.87950 -22.60577 -22.36161 -20.68084 -20.24966 -19.46612 -19.03306 -17.73738 -17.07011 -16.24156 -15.95117 -15.66280 -15.37513 -15.08650 -14.72239 -14.40585 -14.20620 -13.63247 -13.54613 -13.38227 -12.90268 -12.67766 -12.53594 -12.38895 -12.13342 -12.05259 -11.80554 -11.71603 -11.05258 -10.99967 -10.83843 -10.57487 -10.54866 -10.37838 -10.15223 -10.01898 -9.80588 -9.73827 -9.68775 -9.49513 -9.40699 -8.68005 -8.39097 -8.10921 -6.94058 -6.15788 -3.00216 1.44800 2.16494 2.78470 3.51541 3.58024 3.59920 3.74917 3.77199 3.88499 4.31853 4.62380 4.67354 4.83238 4.89031 5.02182 5.16221 5.21955 5.27804 5.32796 5.42538 5.46861 5.50365 5.65625 5.69365 5.83431 5.93843 5.96190 6.00635 6.02376 6.03979 6.10145 6.26123 6.34763 6.38232 6.41027 6.61061 6.70168 6.71146 6.87379 6.92580 7.07794 7.15475 7.24465 7.26213 8.00644 8.09486 8.54778 8.72537 9.09531 9.87443 10.31940 11.14659 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.004392 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.440415 B = 6374.146861 C = 7484.838010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.016 4.016 3 Si 1.034 2.966 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.349 4.349 8 H 0.063 0.937 9 N -0.587 5.587 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.116 3.884 15 H 0.075 0.925 16 N -0.695 5.695 17 C 0.587 3.413 18 O -0.556 6.556 19 C -0.225 4.225 20 C -0.181 4.181 21 C -0.044 4.044 22 O -0.178 6.178 23 C 0.096 3.904 24 C -0.081 4.081 25 C -0.173 4.173 26 C -0.161 4.161 27 C 0.154 3.846 28 H 0.272 0.728 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.158 0.842 39 H 0.207 0.793 40 H 0.152 0.848 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -10.589 -8.308 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.218 4.218 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.477 4.477 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.008 3.992 15 H 0.093 0.907 16 N -0.343 5.343 17 C 0.374 3.626 18 O -0.437 6.437 19 C -0.229 4.229 20 C -0.200 4.200 21 C -0.110 4.110 22 O -0.075 6.075 23 C 0.043 3.957 24 C -0.099 4.099 25 C -0.210 4.210 26 C -0.198 4.198 27 C 0.023 3.977 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.176 0.824 39 H 0.224 0.776 40 H 0.170 0.830 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.060 0.940 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.781 -9.432 -7.903 13.595 hybrid contribution -0.429 -1.086 -0.571 1.300 sum 5.351 -10.518 -8.474 14.529 Atomic orbital electron populations 1.70871 1.07165 1.30533 1.45936 1.25358 0.95775 1.00508 1.00140 0.83978 0.75711 0.77590 0.76330 1.21390 1.22291 1.22355 1.19894 1.09198 0.92394 1.26229 0.91870 1.44369 1.38922 1.05051 1.42444 1.20594 0.86881 1.01548 0.90446 1.21095 0.99418 0.94558 1.02365 1.20937 0.99806 0.97445 0.96596 1.21665 0.94295 1.01104 0.97907 1.22774 0.93479 0.99323 0.83630 0.90684 1.45778 1.19685 1.50094 1.18717 1.17089 0.81328 0.79823 0.84327 1.90691 1.57508 1.38669 1.56837 1.21223 0.97119 1.06910 0.97691 1.22944 1.01957 1.01796 0.93323 1.23790 0.86030 0.99603 1.01566 1.83677 1.40638 1.51416 1.31764 1.21602 0.95220 0.95942 0.82939 1.20789 0.92817 0.96614 0.99653 1.23067 0.92956 1.02156 1.02796 1.23041 1.02580 0.91974 1.02230 1.20617 0.96277 0.86218 0.94584 0.91437 0.95850 0.88754 0.94221 0.91055 0.91740 0.92651 0.93684 0.91053 0.76681 0.82442 0.77631 0.83016 0.88231 0.87818 0.87677 0.88609 0.94048 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 11.99 55.49 0.67 -24.46 16 2 C -0.02 -0.42 4.53 -17.43 -0.08 -0.50 16 3 Si 1.03 24.75 30.06 -169.99 -5.11 19.64 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.35 -9.27 9.46 -15.06 -0.14 -9.41 16 8 H 0.06 1.77 8.05 -52.48 -0.42 1.35 16 9 N -0.59 -13.88 2.62 -175.40 -0.46 -14.34 16 10 C 0.13 2.88 5.22 -5.20 -0.03 2.85 16 11 C -0.14 -2.61 4.96 -30.19 -0.15 -2.76 16 12 C -0.11 -1.82 5.76 -28.40 -0.16 -1.98 16 13 C -0.11 -1.90 5.23 -27.19 -0.14 -2.04 16 14 C 0.12 2.15 2.91 -66.22 -0.19 1.95 16 15 H 0.08 1.39 7.57 -51.93 -0.39 1.00 16 16 N -0.69 -12.74 5.08 -53.24 -0.27 -13.01 16 17 C 0.59 11.08 7.63 -12.54 -0.10 10.99 16 18 O -0.56 -11.51 14.58 5.26 0.08 -11.44 16 19 C -0.23 -3.76 6.31 -103.28 -0.65 -4.42 16 20 C -0.18 -2.56 10.60 -37.45 -0.40 -2.96 16 21 C -0.04 -0.53 12.03 29.30 0.35 -0.18 16 22 O -0.18 -2.44 10.23 7.64 0.08 -2.36 16 23 C 0.10 1.46 6.85 -34.97 -0.24 1.22 16 24 C -0.08 -1.09 5.62 -91.76 -0.52 -1.61 16 25 C -0.17 -1.78 10.17 -26.69 -0.27 -2.05 16 26 C -0.16 -1.71 10.24 -26.69 -0.27 -1.98 16 27 C 0.15 3.27 4.75 -4.93 -0.02 3.24 16 28 H 0.27 7.36 4.95 -40.82 -0.20 7.15 16 29 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.09 2.39 5.61 -51.93 -0.29 2.10 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.55 4.65 -51.93 -0.24 1.30 16 33 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.36 6.58 -51.93 -0.34 1.02 16 37 H 0.40 7.09 7.61 -40.82 -0.31 6.78 16 38 H 0.16 2.03 7.74 -52.49 -0.41 1.62 16 39 H 0.21 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.15 2.30 6.66 -51.93 -0.35 1.95 16 41 H 0.10 1.00 7.97 -51.93 -0.41 0.58 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.98 7.81 -51.93 -0.41 0.58 16 46 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -30.41 361.54 -9.22 -39.63 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.64 Total: 10.53 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.01 Total: -9.65 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.06 Total: -51.81 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.15 Total: -13.79 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.11 Total: 19.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.41 -9.22 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034369251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.987 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds