Wall clock time and date at job start Tue Mar 31 2020 12:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46239 * 107.53207 * 109.56848 * 10 9 7 12 12 C 1.52524 * 114.27600 * 58.40879 * 11 10 9 13 13 C 1.50127 * 105.41056 * 270.58974 * 12 11 10 14 14 C 1.54842 * 110.81178 * 97.68840 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34060 * 14 13 12 16 16 N 1.46507 * 109.35899 * 200.92182 * 14 13 12 17 17 C 1.34768 * 120.00354 * 204.99812 * 16 14 13 18 18 O 1.21617 * 119.99831 * 0.02562 * 17 16 14 19 19 C 1.47379 * 120.00320 * 180.02562 * 17 16 14 20 20 C 1.47027 * 127.18751 * 0.02707 * 19 17 16 21 21 C 1.34176 * 105.95086 * 179.97438 * 20 19 17 22 22 O 1.34217 * 109.12698 * 0.02562 * 21 20 19 23 23 C 1.33655 * 110.90488 * 359.72711 * 22 21 20 24 24 C 1.50700 * 125.80071 * 180.29060 * 23 22 21 25 25 C 1.53005 * 117.49698 * 8.92720 * 24 23 22 26 26 C 1.53009 * 117.49532 * 300.27211 * 24 23 22 27 27 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 28 28 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 29 29 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 30 30 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 31 31 H 1.08999 * 108.51819 * 179.65126 * 11 10 9 32 32 H 1.08994 * 108.51986 * 297.32066 * 11 10 9 33 33 H 1.08992 * 110.25202 * 29.56275 * 12 11 10 34 34 H 1.08998 * 110.24544 * 151.47978 * 12 11 10 35 35 H 1.09003 * 109.20533 * 218.02647 * 13 12 11 36 36 H 1.08999 * 109.21472 * 337.34360 * 13 12 11 37 37 H 0.97006 * 119.99320 * 25.00409 * 16 14 13 38 38 H 1.07994 * 127.02328 * 359.97438 * 20 19 17 39 39 H 1.08005 * 125.43628 * 179.97438 * 21 20 19 40 40 H 1.08998 * 115.55142 * 154.59930 * 24 23 22 41 41 H 1.08995 * 117.49942 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49682 * 145.02448 * 25 24 23 43 43 H 1.09007 * 117.49409 * 214.98020 * 26 24 23 44 44 H 1.08993 * 117.49650 * 359.97438 * 26 24 23 45 45 H 1.08998 * 108.16066 * 33.30621 * 27 9 7 46 46 H 1.09004 * 108.15966 * 149.87646 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4752 -4.2700 1.0126 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1135 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9485 -5.3019 -1.4245 19 6 3.7962 -4.1955 -3.4729 20 6 3.1364 -3.3310 -4.4623 21 6 3.9675 -3.2734 -5.5141 22 8 5.0560 -4.0148 -5.2557 23 6 4.9781 -4.5695 -4.0422 24 6 6.0178 -5.4595 -3.4112 25 6 7.3628 -5.5927 -4.1283 26 6 6.3710 -6.7586 -4.1384 27 6 2.1840 -3.5379 0.6658 28 1 -0.4850 -0.8349 -0.0928 29 1 0.7234 -2.4530 2.7206 30 1 0.2089 -0.9925 1.8346 31 1 -1.5417 -2.6551 1.9211 32 1 -0.9968 -2.3364 0.2689 33 1 0.2635 -4.6388 1.7241 34 1 -1.4100 -4.8200 1.1209 35 1 -0.3694 -5.2943 -0.8471 36 1 -0.2633 -3.5249 -0.9670 37 1 1.5691 -3.5331 -2.2918 38 1 2.1786 -2.8422 -4.3628 39 1 3.7887 -2.7194 -6.4239 40 1 6.0247 -5.4748 -2.3214 41 1 7.4958 -5.0363 -5.0560 42 1 8.2546 -5.6960 -3.5101 43 1 6.6106 -7.6285 -3.5268 44 1 5.8510 -6.9696 -5.0728 45 1 3.2404 -3.3972 0.4372 46 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034369251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:18 Heat of formation + Delta-G solvation = 18.376629 kcal Electronic energy + Delta-G solvation = -27834.060783 eV Core-core repulsion = 24112.512022 eV Total energy + Delta-G solvation = -3721.548761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61374 -40.85253 -39.43387 -38.05768 -36.07270 -34.92774 -33.99259 -32.93243 -31.52605 -30.68390 -27.91622 -26.16377 -25.06537 -24.21962 -23.81532 -23.33061 -22.19505 -21.56094 -20.99099 -20.40601 -19.02219 -18.88018 -17.36805 -17.20919 -17.10710 -16.63949 -16.45790 -16.16535 -15.93708 -15.62776 -15.53636 -15.00824 -14.79772 -14.33396 -14.10826 -13.97312 -13.74542 -13.54690 -13.45825 -13.11641 -12.77199 -12.52367 -12.48659 -12.44119 -12.18154 -11.94389 -11.94147 -11.75583 -11.55443 -11.48334 -11.28951 -11.18748 -10.92015 -10.85128 -10.36391 -9.99601 -9.46622 -8.85340 -8.27222 -5.06862 0.26255 1.08518 1.57489 1.63223 1.72728 1.82767 2.25132 2.41103 2.66942 2.88539 3.13709 3.35410 3.45808 3.69791 3.73621 3.83262 3.91152 3.99847 4.00604 4.19914 4.24996 4.38304 4.43048 4.46638 4.50676 4.66683 4.67713 4.70019 4.78193 4.81949 4.91952 5.00980 5.05398 5.06751 5.12328 5.15262 5.15893 5.29610 5.31901 5.39231 5.48669 5.61888 5.64796 5.91888 5.98808 6.49769 6.61078 7.10498 7.25607 7.87712 8.31962 9.05578 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.004392 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.440415 B = 6374.146861 C = 7484.838010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.053 4.053 3 Si 1.077 2.923 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.348 4.348 8 H 0.039 0.961 9 N -0.597 5.597 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.102 4.102 14 C 0.123 3.877 15 H 0.079 0.921 16 N -0.695 5.695 17 C 0.581 3.419 18 O -0.582 6.582 19 C -0.264 4.264 20 C -0.204 4.204 21 C -0.023 4.023 22 O -0.175 6.175 23 C 0.098 3.902 24 C -0.117 4.117 25 C -0.152 4.152 26 C -0.147 4.147 27 C 0.158 3.842 28 H 0.271 0.729 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.400 0.600 38 H 0.163 0.837 39 H 0.254 0.746 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.007 0.993 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -11.547 -9.521 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.252 4.252 3 Si 0.905 3.095 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.477 4.477 8 H 0.057 0.943 9 N -0.320 5.320 10 C 0.009 3.991 11 C -0.167 4.167 12 C -0.139 4.139 13 C -0.140 4.140 14 C 0.015 3.985 15 H 0.097 0.903 16 N -0.343 5.343 17 C 0.371 3.629 18 O -0.466 6.466 19 C -0.269 4.269 20 C -0.223 4.223 21 C -0.088 4.088 22 O -0.071 6.071 23 C 0.045 3.955 24 C -0.135 4.135 25 C -0.188 4.188 26 C -0.184 4.184 27 C 0.028 3.972 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.235 0.765 38 H 0.181 0.819 39 H 0.270 0.730 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.026 0.974 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.989 -10.407 -9.122 15.079 hybrid contribution -0.433 -0.815 -0.184 0.940 sum 5.556 -11.222 -9.306 15.601 Atomic orbital electron populations 1.70906 1.07561 1.30656 1.47564 1.26183 0.96011 1.02597 1.00422 0.83355 0.74742 0.74851 0.76568 1.21696 1.21318 1.22175 1.19800 1.08060 0.93676 1.26176 0.94253 1.44400 1.39759 1.05419 1.42404 1.20553 0.87541 1.00180 0.90874 1.20933 0.98488 0.96101 1.01172 1.20928 1.01481 0.95481 0.96013 1.21587 0.92693 1.01338 0.98394 1.22596 0.94657 0.98348 0.82909 0.90286 1.45779 1.19763 1.50107 1.18602 1.17485 0.81042 0.79287 0.85124 1.90657 1.58098 1.39916 1.57883 1.21271 0.98746 1.09291 0.97556 1.23093 1.02970 1.02580 0.93696 1.24640 0.84339 0.97779 1.02070 1.83709 1.41173 1.51336 1.30909 1.21867 0.94930 0.95484 0.83228 1.20732 0.94992 0.99082 0.98715 1.23185 0.92025 1.01162 1.02461 1.23155 1.01781 0.91511 1.01905 1.20592 0.94346 0.86040 0.96187 0.91630 0.94437 0.91997 0.92452 0.93547 0.91379 0.89387 0.91021 0.93239 0.76520 0.81906 0.73013 0.85513 0.87534 0.86077 0.86309 0.88025 0.97444 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 11.99 21.65 0.26 -51.99 16 2 C -0.05 -2.91 4.53 84.86 0.38 -2.52 16 3 Si 1.08 50.91 30.06 68.60 2.06 52.97 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.35 -19.01 9.46 84.04 0.80 -18.21 16 8 H 0.04 2.30 8.05 -2.91 -0.02 2.28 16 9 N -0.60 -28.82 2.62 -708.84 -1.86 -30.68 16 10 C 0.13 5.89 5.22 83.58 0.44 6.32 16 11 C -0.13 -4.83 4.96 28.35 0.14 -4.69 16 12 C -0.10 -3.12 5.76 29.51 0.17 -2.95 16 13 C -0.10 -3.35 5.23 30.30 0.16 -3.19 16 14 C 0.12 4.56 2.91 46.09 0.13 4.70 16 15 H 0.08 2.91 7.57 -2.38 -0.02 2.89 16 16 N -0.69 -26.26 5.08 -440.60 -2.24 -28.50 16 17 C 0.58 22.85 7.63 86.65 0.66 23.51 16 18 O -0.58 -25.20 14.58 -4.08 -0.06 -25.26 16 19 C -0.26 -9.05 6.31 -18.99 -0.12 -9.17 16 20 C -0.20 -5.72 10.60 23.65 0.25 -5.47 16 21 C -0.02 -0.51 12.03 66.89 0.80 0.29 16 22 O -0.18 -4.50 10.23 4.43 0.05 -4.46 16 23 C 0.10 2.98 6.85 25.26 0.17 3.16 16 24 C -0.12 -3.16 5.62 -11.54 -0.06 -3.23 16 25 C -0.15 -2.86 10.17 30.62 0.31 -2.55 16 26 C -0.15 -2.88 10.24 30.62 0.31 -2.57 16 27 C 0.16 6.85 4.75 87.42 0.41 7.26 16 28 H 0.27 14.95 4.95 -92.71 -0.46 14.49 16 29 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.06 3.18 5.61 -2.38 -0.01 3.17 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 33 H 0.07 2.08 6.28 -2.39 -0.02 2.07 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.87 6.58 -2.39 -0.02 1.86 16 37 H 0.40 14.76 7.61 -92.70 -0.71 14.06 16 38 H 0.16 4.22 7.74 -2.91 -0.02 4.20 16 39 H 0.25 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.13 4.06 6.66 -2.39 -0.02 4.04 16 41 H 0.11 1.88 7.97 -2.39 -0.02 1.86 16 42 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.36 7.81 -2.39 -0.02 0.34 16 46 H 0.05 2.01 6.89 -2.39 -0.02 1.99 16 Total: -1.00 -68.11 361.54 3.78 -64.33 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.61 Total: 32.90 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.96 Total: -9.32 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -3.84 Total: -111.17 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.01 Total: -29.71 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.06 Total: 52.97 kcal Total: -68.11 3.78 -64.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034369251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.707 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds