Wall clock time and date at job start Tue Mar 31 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00033 * 2 1 4 4 H 1.48499 * 109.47459 * 270.00262 * 3 2 1 5 5 H 1.48501 * 109.47127 * 30.00078 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00103 * 3 2 1 7 7 C 1.38813 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99642 * 196.10918 * 7 2 1 9 9 N 1.36928 * 120.00140 * 15.82766 * 7 2 1 10 10 C 1.44578 * 118.64502 * 206.61511 * 9 7 2 11 11 C 1.54856 * 109.60571 * 270.70975 * 10 9 7 12 12 C 1.47098 * 110.32110 * 288.73622 * 11 10 9 13 13 C 1.52564 * 114.32793 * 62.79955 * 12 11 10 14 14 C 1.50883 * 109.35869 * 274.98764 * 13 12 11 15 15 H 1.09003 * 109.36463 * 331.69619 * 14 13 12 16 16 N 1.46497 * 109.36884 * 212.08038 * 14 13 12 17 17 C 1.34777 * 120.00177 * 154.99654 * 16 14 13 18 18 O 1.21281 * 119.99923 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.99991 * 179.97438 * 17 16 14 20 20 H 1.09009 * 115.55187 * 34.33998 * 19 17 16 21 21 C 1.52998 * 117.50336 * 248.62321 * 19 17 16 22 22 C 1.52993 * 60.00030 * 252.51297 * 21 19 17 23 23 H 1.08999 * 117.51740 * 107.48228 * 22 21 19 24 24 C 1.50704 * 117.49677 * 252.50607 * 22 21 19 25 25 C 1.34518 * 125.78847 * 188.62094 * 24 22 21 26 26 C 1.41382 * 106.83847 * 180.02562 * 25 24 22 27 27 C 1.34508 * 106.84556 * 0.02562 * 26 25 24 28 28 O 1.34306 * 125.79051 * 8.32335 * 24 22 21 29 29 C 1.47606 * 118.64388 * 26.35588 * 9 7 2 30 30 H 0.97008 * 120.00517 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.45076 * 30.75370 * 10 9 7 32 32 H 1.09006 * 109.44780 * 150.67051 * 10 9 7 33 33 H 1.09004 * 109.32662 * 48.98976 * 11 10 9 34 34 H 1.08996 * 109.33598 * 168.46950 * 11 10 9 35 35 H 1.09005 * 108.50907 * 184.05271 * 12 11 10 36 36 H 1.08999 * 108.51138 * 301.69430 * 12 11 10 37 37 H 1.08995 * 109.49386 * 34.95158 * 13 12 11 38 38 H 1.08999 * 109.49422 * 155.02432 * 13 12 11 39 39 H 0.97004 * 119.99765 * 334.99901 * 16 14 13 40 40 H 1.08999 * 117.49721 * 0.02562 * 21 19 17 41 41 H 1.09006 * 117.49755 * 145.02189 * 21 19 17 42 42 H 1.07998 * 126.57854 * 0.03980 * 25 24 22 43 43 H 1.08007 * 126.57629 * 179.97438 * 26 25 24 44 44 H 1.07997 * 125.79294 * 180.02562 * 27 26 25 45 45 H 1.08999 * 108.94322 * 258.57485 * 29 9 7 46 46 H 1.09005 * 108.94493 * 17.19824 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0584 -1.2206 0.2590 9 7 1.3645 -2.3654 -0.3245 10 6 1.8672 -3.6099 0.2128 11 6 2.9242 -4.2028 -0.7511 12 6 2.2767 -4.7058 -1.9724 13 6 1.5724 -3.6333 -2.7977 14 6 0.1792 -3.4219 -2.2585 15 1 -0.1743 -4.3447 -1.7985 16 7 -0.7170 -3.0559 -3.3581 17 6 -2.0389 -3.3001 -3.2599 18 8 -2.4865 -3.8224 -2.2610 19 6 -2.9608 -2.9231 -4.3908 20 1 -2.5402 -3.0183 -5.3919 21 6 -3.9503 -1.7823 -4.1453 22 6 -4.4505 -3.2262 -4.2187 23 1 -4.7637 -3.6987 -3.2877 24 6 -5.2242 -3.6330 -5.4464 25 6 -5.8768 -4.7971 -5.6150 26 6 -6.4582 -4.7578 -6.9032 27 6 -6.1256 -3.5724 -7.4449 28 8 -5.3838 -2.8925 -6.5554 29 6 0.1805 -2.2963 -1.2032 30 1 -0.4851 0.8401 0.0004 31 1 2.3247 -3.4270 1.1851 32 1 1.0437 -4.3150 0.3266 33 1 3.6442 -3.4288 -1.0172 34 1 3.4455 -5.0218 -0.2556 35 1 3.0348 -5.1800 -2.5958 36 1 1.5422 -5.4597 -1.6893 37 1 2.1320 -2.7001 -2.7350 38 1 1.5149 -3.9540 -3.8379 39 1 -0.3591 -2.6379 -4.1569 40 1 -3.9342 -1.3041 -3.1659 41 1 -4.1807 -1.1265 -4.9850 42 1 -5.9440 -5.6063 -4.9030 43 1 -7.0542 -5.5316 -7.3642 44 1 -6.4117 -3.2239 -8.4263 45 1 -0.7186 -2.3780 -0.5924 46 1 0.1738 -1.3329 -1.7130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034413787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:31 Heat of formation + Delta-G solvation = 25.577585 kcal Electronic energy + Delta-G solvation = -26891.726569 eV Core-core repulsion = 23170.490066 eV Total energy + Delta-G solvation = -3721.236504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.73337 -39.80386 -37.96535 -36.33772 -34.33195 -33.51974 -33.14048 -30.78166 -30.20606 -29.47118 -26.12574 -24.75814 -24.09087 -23.27430 -22.55817 -21.81833 -20.37097 -20.16712 -19.54767 -19.20642 -17.75353 -16.94411 -16.63260 -16.09921 -15.69062 -15.35533 -14.98264 -14.58150 -14.31152 -13.95055 -13.64406 -13.40086 -13.22268 -12.97304 -12.87508 -12.65428 -12.50090 -12.40295 -12.07123 -11.96114 -11.32808 -11.20293 -11.05965 -10.94345 -10.70870 -10.59857 -10.40049 -10.23337 -10.14205 -10.05074 -9.94545 -9.78267 -9.55014 -9.43453 -8.53737 -8.48159 -8.35702 -6.63899 -5.75140 -3.19919 1.49826 2.40672 2.75839 2.84008 3.36767 3.44213 3.45587 3.48989 3.88399 4.39239 4.51303 4.61475 4.76204 4.86281 4.91122 5.13190 5.16864 5.27378 5.34647 5.47548 5.56876 5.64438 5.66915 5.73004 5.75454 5.85039 5.95192 5.97140 6.00316 6.03603 6.22882 6.33195 6.34680 6.49084 6.62818 6.66904 6.68105 6.80754 6.92971 6.98652 6.99361 7.11857 7.40446 7.76862 7.84905 7.94847 8.48364 8.62028 9.25570 9.92670 10.38062 11.30977 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003135 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.650621 B = 8930.359490 C =10058.306409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.072 0.928 16 N -0.711 5.711 17 C 0.542 3.458 18 O -0.538 6.538 19 C -0.172 4.172 20 H 0.123 0.877 21 C -0.135 4.135 22 C -0.054 4.054 23 H 0.148 0.852 24 C 0.024 3.976 25 C -0.205 4.205 26 C -0.213 4.213 27 C -0.046 4.046 28 O -0.175 6.175 29 C 0.176 3.824 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.396 0.604 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.202 0.798 45 H 0.031 0.969 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 -7.890 -14.597 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.091 0.909 16 N -0.361 5.361 17 C 0.327 3.673 18 O -0.415 6.415 19 C -0.193 4.193 20 H 0.141 0.859 21 C -0.173 4.173 22 C -0.072 4.072 23 H 0.166 0.834 24 C -0.026 4.026 25 C -0.224 4.224 26 C -0.232 4.232 27 C -0.114 4.114 28 O -0.072 6.072 29 C 0.050 3.950 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.229 0.771 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.050 0.950 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.949 -7.855 -13.870 17.811 hybrid contribution 0.496 0.864 -0.637 1.182 sum -7.453 -6.991 -14.507 17.745 Atomic orbital electron populations 1.70095 1.05127 1.25315 1.53847 1.25055 0.95247 0.98335 1.00836 0.86334 0.79158 0.83935 0.77595 1.21559 1.21826 1.20476 1.19210 0.92523 0.84941 1.42148 0.91589 1.43555 1.32558 1.02047 1.52738 1.20737 0.94099 0.88263 0.94303 1.21495 1.00192 0.99712 0.97354 1.20219 0.98957 0.97457 0.96990 1.21267 0.95724 1.00870 0.97451 1.21862 0.87998 1.00733 0.88038 0.90940 1.46046 1.06878 1.62392 1.20786 1.19368 0.82596 0.78431 0.86880 1.90701 1.75852 1.43406 1.31587 1.22391 0.90776 1.06194 0.99928 0.85894 1.23101 0.98987 0.90201 1.04994 1.20513 0.92126 1.00770 0.93826 0.83398 1.21447 1.02168 0.91353 0.87617 1.21565 1.03242 0.98946 0.98622 1.21837 1.05885 0.99271 0.96197 1.23997 0.98682 0.93128 0.95580 1.83985 1.57196 1.42964 1.23032 1.21374 0.89044 0.95141 0.89484 0.93727 0.93597 0.94944 0.92087 0.93455 0.93721 0.93256 0.90063 0.93125 0.77075 0.86755 0.87289 0.83299 0.83479 0.78156 0.95048 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.01 55.49 0.61 -25.37 16 2 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 3 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.93 9.44 -15.06 -0.14 -7.07 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.41 2.26 -171.88 -0.39 -14.80 16 10 C 0.15 3.24 5.65 -4.09 -0.02 3.22 16 11 C -0.15 -2.57 5.74 -28.59 -0.16 -2.73 16 12 C -0.10 -1.57 5.16 -29.79 -0.15 -1.73 16 13 C -0.12 -1.93 5.07 -28.02 -0.14 -2.07 16 14 C 0.12 2.25 2.27 -68.32 -0.15 2.10 16 15 H 0.07 1.49 6.75 -51.93 -0.35 1.14 16 16 N -0.71 -11.57 4.98 -54.19 -0.27 -11.84 16 17 C 0.54 9.16 7.57 -10.99 -0.08 9.08 16 18 O -0.54 -11.20 15.92 5.56 0.09 -11.11 16 19 C -0.17 -2.23 5.89 -91.78 -0.54 -2.77 16 20 H 0.12 1.36 8.14 -51.92 -0.42 0.93 16 21 C -0.14 -1.65 9.87 -26.74 -0.26 -1.92 16 22 C -0.05 -0.68 5.75 -91.77 -0.53 -1.21 16 23 H 0.15 1.97 7.67 -51.93 -0.40 1.57 16 24 C 0.02 0.29 6.80 -35.62 -0.24 0.05 16 25 C -0.20 -2.29 10.81 -39.70 -0.43 -2.72 16 26 C -0.21 -2.02 10.91 -39.70 -0.43 -2.45 16 27 C -0.05 -0.42 12.09 29.41 0.36 -0.06 16 28 O -0.18 -2.01 10.36 5.68 0.06 -1.96 16 29 C 0.18 4.21 4.29 -2.76 -0.01 4.19 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 32 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.79 7.35 -51.93 -0.38 0.40 16 37 H 0.08 1.54 7.49 -51.93 -0.39 1.15 16 38 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 39 H 0.40 5.27 8.54 -40.82 -0.35 4.92 16 40 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.11 1.16 7.96 -51.93 -0.41 0.75 16 42 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 46 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -31.96 372.77 -9.56 -41.51 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.20 Total: 7.56 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.04 Total: -6.07 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.05 Total: -52.02 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.15 Total: -13.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.96 -9.56 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034413787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.091 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds