Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00033 * 2 1 4 4 H 1.48499 * 109.47459 * 270.00262 * 3 2 1 5 5 H 1.48501 * 109.47127 * 30.00078 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00103 * 3 2 1 7 7 C 1.38813 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99642 * 196.10918 * 7 2 1 9 9 N 1.36928 * 120.00140 * 15.82766 * 7 2 1 10 10 C 1.44578 * 118.64502 * 206.61511 * 9 7 2 11 11 C 1.54856 * 109.60571 * 270.70975 * 10 9 7 12 12 C 1.47098 * 110.32110 * 288.73622 * 11 10 9 13 13 C 1.52564 * 114.32793 * 62.79955 * 12 11 10 14 14 C 1.50883 * 109.35869 * 274.98764 * 13 12 11 15 15 H 1.09003 * 109.36463 * 331.69619 * 14 13 12 16 16 N 1.46497 * 109.36884 * 212.08038 * 14 13 12 17 17 C 1.34777 * 120.00177 * 154.99654 * 16 14 13 18 18 O 1.21281 * 119.99923 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.99991 * 179.97438 * 17 16 14 20 20 H 1.09009 * 115.55187 * 34.33998 * 19 17 16 21 21 C 1.52998 * 117.50336 * 248.62321 * 19 17 16 22 22 C 1.52993 * 60.00030 * 252.51297 * 21 19 17 23 23 H 1.08999 * 117.51740 * 107.48228 * 22 21 19 24 24 C 1.50704 * 117.49677 * 252.50607 * 22 21 19 25 25 C 1.34518 * 125.78847 * 188.62094 * 24 22 21 26 26 C 1.41382 * 106.83847 * 180.02562 * 25 24 22 27 27 C 1.34508 * 106.84556 * 0.02562 * 26 25 24 28 28 O 1.34306 * 125.79051 * 8.32335 * 24 22 21 29 29 C 1.47606 * 118.64388 * 26.35588 * 9 7 2 30 30 H 0.97008 * 120.00517 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.45076 * 30.75370 * 10 9 7 32 32 H 1.09006 * 109.44780 * 150.67051 * 10 9 7 33 33 H 1.09004 * 109.32662 * 48.98976 * 11 10 9 34 34 H 1.08996 * 109.33598 * 168.46950 * 11 10 9 35 35 H 1.09005 * 108.50907 * 184.05271 * 12 11 10 36 36 H 1.08999 * 108.51138 * 301.69430 * 12 11 10 37 37 H 1.08995 * 109.49386 * 34.95158 * 13 12 11 38 38 H 1.08999 * 109.49422 * 155.02432 * 13 12 11 39 39 H 0.97004 * 119.99765 * 334.99901 * 16 14 13 40 40 H 1.08999 * 117.49721 * 0.02562 * 21 19 17 41 41 H 1.09006 * 117.49755 * 145.02189 * 21 19 17 42 42 H 1.07998 * 126.57854 * 0.03980 * 25 24 22 43 43 H 1.08007 * 126.57629 * 179.97438 * 26 25 24 44 44 H 1.07997 * 125.79294 * 180.02562 * 27 26 25 45 45 H 1.08999 * 108.94322 * 258.57485 * 29 9 7 46 46 H 1.09005 * 108.94493 * 17.19824 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0584 -1.2206 0.2590 9 7 1.3645 -2.3654 -0.3245 10 6 1.8672 -3.6099 0.2128 11 6 2.9242 -4.2028 -0.7511 12 6 2.2767 -4.7058 -1.9724 13 6 1.5724 -3.6333 -2.7977 14 6 0.1792 -3.4219 -2.2585 15 1 -0.1743 -4.3447 -1.7985 16 7 -0.7170 -3.0559 -3.3581 17 6 -2.0389 -3.3001 -3.2599 18 8 -2.4865 -3.8224 -2.2610 19 6 -2.9608 -2.9231 -4.3908 20 1 -2.5402 -3.0183 -5.3919 21 6 -3.9503 -1.7823 -4.1453 22 6 -4.4505 -3.2262 -4.2187 23 1 -4.7637 -3.6987 -3.2877 24 6 -5.2242 -3.6330 -5.4464 25 6 -5.8768 -4.7971 -5.6150 26 6 -6.4582 -4.7578 -6.9032 27 6 -6.1256 -3.5724 -7.4449 28 8 -5.3838 -2.8925 -6.5554 29 6 0.1805 -2.2963 -1.2032 30 1 -0.4851 0.8401 0.0004 31 1 2.3247 -3.4270 1.1851 32 1 1.0437 -4.3150 0.3266 33 1 3.6442 -3.4288 -1.0172 34 1 3.4455 -5.0218 -0.2556 35 1 3.0348 -5.1800 -2.5958 36 1 1.5422 -5.4597 -1.6893 37 1 2.1320 -2.7001 -2.7350 38 1 1.5149 -3.9540 -3.8379 39 1 -0.3591 -2.6379 -4.1569 40 1 -3.9342 -1.3041 -3.1659 41 1 -4.1807 -1.1265 -4.9850 42 1 -5.9440 -5.6063 -4.9030 43 1 -7.0542 -5.5316 -7.3642 44 1 -6.4117 -3.2239 -8.4263 45 1 -0.7186 -2.3780 -0.5924 46 1 0.1738 -1.3329 -1.7130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034413787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = 6.725470 kcal Electronic energy + Delta-G solvation = -26892.544058 eV Core-core repulsion = 23170.490066 eV Total energy + Delta-G solvation = -3722.053993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.52015 -41.19474 -39.48414 -37.56095 -36.00169 -35.18426 -33.91826 -32.68758 -31.70981 -30.36680 -27.97208 -26.24479 -25.70432 -24.26022 -24.07662 -22.60937 -21.74340 -21.25805 -20.93896 -20.73191 -18.72878 -18.58933 -18.01279 -17.28940 -17.03931 -16.82933 -16.15435 -15.99100 -15.86051 -15.52404 -15.17666 -15.04583 -14.43657 -14.09713 -14.06417 -13.77551 -13.75996 -13.73274 -13.41093 -13.01010 -12.95033 -12.94083 -12.81998 -12.46711 -12.19742 -12.05586 -12.02390 -11.86075 -11.62739 -11.53746 -11.40268 -11.16462 -10.90698 -10.81864 -10.49307 -10.02003 -9.29992 -8.66381 -7.83733 -5.32289 0.68426 1.45370 1.47082 1.48122 1.56639 1.68519 1.94826 2.23312 2.52783 2.82496 3.27856 3.43294 3.56404 3.66342 3.78089 3.94571 4.02648 4.07644 4.10477 4.16987 4.30435 4.35773 4.42451 4.44969 4.61894 4.65674 4.82453 4.83722 4.88004 4.95074 5.01842 5.04941 5.08338 5.14709 5.19840 5.29105 5.31405 5.40437 5.46797 5.56209 5.60224 5.64053 5.69127 5.81624 6.20517 6.39854 6.60086 7.16534 7.28582 7.93360 8.34173 9.20202 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003135 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.650621 B = 8930.359490 C =10058.306409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.106 4.106 14 C 0.135 3.865 15 H 0.058 0.942 16 N -0.704 5.704 17 C 0.537 3.463 18 O -0.584 6.584 19 C -0.167 4.167 20 H 0.152 0.848 21 C -0.129 4.129 22 C -0.049 4.049 23 H 0.132 0.868 24 C 0.002 3.998 25 C -0.213 4.213 26 C -0.226 4.226 27 C -0.036 4.036 28 O -0.186 6.186 29 C 0.196 3.804 30 H 0.246 0.754 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.413 0.587 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.242 0.758 45 H -0.026 1.026 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 -8.634 -17.619 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.144 4.144 14 C 0.029 3.971 15 H 0.076 0.924 16 N -0.354 5.354 17 C 0.324 3.676 18 O -0.465 6.465 19 C -0.188 4.188 20 H 0.169 0.831 21 C -0.166 4.166 22 C -0.068 4.068 23 H 0.149 0.851 24 C -0.048 4.048 25 C -0.233 4.233 26 C -0.245 4.245 27 C -0.103 4.103 28 O -0.083 6.083 29 C 0.070 3.930 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.250 0.750 40 H 0.114 0.886 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.188 0.812 44 H 0.258 0.742 45 H -0.008 1.008 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.896 -8.620 -16.921 20.203 hybrid contribution 0.109 1.030 0.359 1.097 sum -6.787 -7.590 -16.561 19.441 Atomic orbital electron populations 1.70294 1.06707 1.25496 1.55690 1.25820 0.95931 1.01541 1.01294 0.85292 0.78024 0.79633 0.77650 1.20876 1.22660 1.19320 1.19528 0.92758 0.85872 1.41040 0.91224 1.43771 1.32347 1.02770 1.53481 1.20952 0.95019 0.87064 0.95097 1.21312 0.98592 1.00071 0.97192 1.20240 0.99777 0.97121 0.96677 1.21207 0.93219 1.00433 0.99584 1.21431 0.90314 0.97647 0.87733 0.92426 1.45936 1.06665 1.62191 1.20618 1.20075 0.82973 0.77295 0.87245 1.90679 1.76620 1.45439 1.33739 1.22333 0.90342 1.06793 0.99347 0.83050 1.23114 0.98326 0.90344 1.04857 1.20339 0.91773 1.00650 0.93999 0.85056 1.21243 1.03575 0.92033 0.87940 1.21850 1.02958 0.98768 0.99680 1.22165 1.06387 1.00399 0.95516 1.24850 0.96692 0.92584 0.96187 1.83971 1.57817 1.43374 1.23122 1.20983 0.86710 0.95747 0.89567 0.94439 0.94467 0.95314 0.93080 0.90519 0.90249 0.93030 0.92116 0.89523 0.75006 0.88618 0.85074 0.83073 0.81200 0.74227 1.00795 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 11.01 21.65 0.24 -56.38 16 2 C -0.05 -2.85 4.86 84.86 0.41 -2.43 16 3 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.26 -14.31 9.44 84.04 0.79 -13.52 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 9 N -0.60 -30.44 2.26 -697.70 -1.58 -32.02 16 10 C 0.15 6.17 5.65 87.37 0.49 6.67 16 11 C -0.13 -4.34 5.74 29.39 0.17 -4.18 16 12 C -0.10 -2.93 5.16 28.61 0.15 -2.78 16 13 C -0.11 -3.37 5.07 29.76 0.15 -3.22 16 14 C 0.13 5.19 2.27 44.74 0.10 5.29 16 15 H 0.06 2.42 6.75 -2.39 -0.02 2.41 16 16 N -0.70 -22.93 4.98 -443.73 -2.21 -25.14 16 17 C 0.54 18.63 7.57 87.66 0.66 19.29 16 18 O -0.58 -25.74 15.92 -3.03 -0.05 -25.79 16 19 C -0.17 -4.29 5.89 -11.54 -0.07 -4.36 16 20 H 0.15 3.01 8.14 -2.38 -0.02 2.99 16 21 C -0.13 -3.17 9.87 30.59 0.30 -2.87 16 22 C -0.05 -1.25 5.75 -11.54 -0.07 -1.32 16 23 H 0.13 3.76 7.67 -2.39 -0.02 3.74 16 24 C 0.00 0.04 6.80 24.83 0.17 0.21 16 25 C -0.21 -4.58 10.81 22.19 0.24 -4.34 16 26 C -0.23 -3.75 10.91 22.19 0.24 -3.51 16 27 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 28 O -0.19 -3.89 10.36 -2.58 -0.03 -3.91 16 29 C 0.20 9.90 4.29 86.61 0.37 10.27 16 30 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 32 H 0.03 1.22 8.06 -2.38 -0.02 1.20 16 33 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.51 7.35 -2.39 -0.02 1.50 16 37 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 38 H 0.09 2.15 7.94 -2.39 -0.02 2.13 16 39 H 0.41 10.49 8.54 -92.71 -0.79 9.70 16 40 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.13 2.63 7.96 -2.38 -0.02 2.61 16 42 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 43 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 45 H -0.03 -1.58 8.03 -2.39 -0.02 -1.60 16 46 H 0.05 2.74 6.31 -2.38 -0.02 2.73 16 Total: -1.00 -73.83 372.77 3.52 -70.31 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.19 Total: 26.46 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.93 Total: -0.53 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.55 Total: -113.54 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.08 Total: -29.70 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.83 3.52 -70.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034413787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.034 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds