Wall clock time and date at job start Tue Mar 31 2020 12:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47139 * 240.00323 * 3 2 1 5 5 H 1.48508 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47046 * 120.00064 * 3 2 1 7 7 C 1.38814 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46813 * 35.00354 * 10 9 7 12 12 C 1.53000 * 109.46840 * 155.00080 * 10 9 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47127 * 300.00449 * 13 12 10 15 15 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 16 16 N 1.46504 * 109.46883 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00111 * 84.99828 * 16 14 13 18 18 O 1.21690 * 120.00271 * 359.97438 * 17 16 14 19 19 C 1.46659 * 119.99682 * 179.97438 * 17 16 14 20 20 O 1.34939 * 126.00946 * 359.69508 * 19 17 16 21 21 C 1.33949 * 109.37539 * 179.82482 * 20 19 17 22 22 C 1.35135 * 108.75365 * 0.43777 * 21 20 19 23 23 C 1.36468 * 126.00418 * 180.02562 * 19 17 16 24 24 C 1.51084 * 143.67188 * 359.97438 * 23 19 17 25 25 C 1.54377 * 105.24440 * 197.16424 * 24 23 19 26 26 C 1.51152 * 143.43961 * 179.73014 * 22 21 20 27 27 C 1.52997 * 109.47164 * 59.99836 * 14 13 12 28 28 C 1.52996 * 109.47185 * 275.00198 * 10 9 7 29 29 H 0.97004 * 119.99701 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99458 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47398 * 300.00326 * 12 10 9 32 32 H 1.09001 * 109.47194 * 60.00507 * 12 10 9 33 33 H 1.08998 * 109.47533 * 59.99948 * 13 12 10 34 34 H 1.08996 * 109.47853 * 180.02562 * 13 12 10 35 35 H 0.97003 * 119.99624 * 264.99510 * 16 14 13 36 36 H 1.08004 * 125.61784 * 180.18878 * 21 20 19 37 37 H 1.09001 * 110.28607 * 316.10949 * 24 23 19 38 38 H 1.09001 * 110.28389 * 78.12683 * 24 23 19 39 39 H 1.09002 * 110.75397 * 91.85509 * 25 24 23 40 40 H 1.08993 * 110.76190 * 215.05352 * 25 24 23 41 41 H 1.08998 * 110.28887 * 43.88947 * 26 22 21 42 42 H 1.08998 * 110.36773 * 281.82181 * 26 22 21 43 43 H 1.09002 * 109.47045 * 180.02562 * 27 14 13 44 44 H 1.09001 * 109.47375 * 59.99966 * 27 14 13 45 45 H 1.08992 * 109.47554 * 299.99819 * 28 10 9 46 46 H 1.09004 * 109.47108 * 60.00069 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9691 -3.5508 0.5872 12 6 1.1812 -4.7524 0.6081 13 6 1.9463 -6.0773 0.6076 14 6 2.3098 -6.4558 -0.8297 15 1 1.3988 -6.5621 -1.4188 16 7 3.0419 -7.7248 -0.8303 17 6 2.3677 -8.8917 -0.8304 18 8 1.1508 -8.8915 -0.8296 19 6 3.1007 -10.1620 -0.8315 20 8 4.4426 -10.3036 -0.8383 21 6 4.7520 -11.6068 -0.8332 22 6 3.6074 -12.3251 -0.8329 23 6 2.5455 -11.4086 -0.8323 24 6 1.2326 -12.1563 -0.8321 25 6 1.5845 -13.5942 -0.3941 26 6 3.0575 -13.7331 -0.8333 27 6 3.1865 -5.3602 -1.4394 28 6 2.4208 -4.0350 -1.4391 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.9227 -4.4830 1.6322 32 1 0.2701 -4.8584 0.0193 33 1 2.8573 -5.9711 1.1966 34 1 1.3216 -6.8580 1.0415 35 1 4.0119 -7.7250 -0.8306 36 1 5.7516 -12.0160 -0.8338 37 1 0.5401 -11.7038 -0.1224 38 1 0.7995 -12.1597 -1.8323 39 1 1.4926 -13.7022 0.6867 40 1 0.9545 -14.3199 -0.9083 41 1 3.6068 -14.3536 -0.1252 42 1 3.1139 -14.1621 -1.8337 43 1 3.4450 -5.6296 -2.4635 44 1 4.0975 -5.2539 -0.8503 45 1 1.5098 -4.1410 -2.0279 46 1 3.0454 -3.2545 -1.8735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034700220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:03 Heat of formation + Delta-G solvation = -44.334200 kcal Electronic energy + Delta-G solvation = -26173.530911 eV Core-core repulsion = 22449.262805 eV Total energy + Delta-G solvation = -3724.268106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.87896 -40.99028 -39.25445 -38.26131 -36.41076 -34.69717 -32.60425 -31.72471 -31.65990 -31.35876 -29.18395 -27.86596 -25.70386 -24.35037 -23.63836 -22.98051 -22.10157 -21.28081 -21.25605 -20.42918 -19.11416 -18.59621 -17.58853 -17.36288 -17.02343 -16.77935 -16.10250 -15.97535 -15.66413 -15.38285 -15.30776 -15.03241 -15.00245 -14.48066 -14.13433 -13.96148 -13.70116 -13.60322 -13.20595 -13.10524 -12.77807 -12.68081 -12.64347 -12.47101 -12.28392 -12.08836 -12.07481 -12.05939 -12.03075 -11.76338 -11.65231 -11.37296 -11.08647 -10.85462 -10.32655 -10.16680 -9.55309 -8.98927 -7.91932 -5.20540 -0.00780 1.31130 1.47531 1.50811 1.56711 1.61713 2.04862 2.19646 2.57817 3.04103 3.40573 3.63886 3.73380 3.81816 3.85257 3.87938 4.12509 4.15995 4.19230 4.22342 4.35663 4.36991 4.47247 4.55666 4.57129 4.64394 4.78172 4.81897 4.82265 4.93695 4.97210 5.01549 5.06655 5.08381 5.09714 5.18416 5.21223 5.27025 5.31695 5.36504 5.43270 5.50681 5.54244 5.63838 5.81247 6.30106 6.44008 7.00861 7.35392 8.12758 8.35552 9.31689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.002160 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.477357 B =12959.701249 C =13404.228208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.112 4.112 13 C -0.111 4.111 14 C 0.152 3.848 15 H 0.070 0.930 16 N -0.701 5.701 17 C 0.600 3.400 18 O -0.559 6.559 19 C -0.096 4.096 20 O -0.160 6.160 21 C 0.026 3.974 22 C -0.232 4.232 23 C -0.123 4.123 24 C -0.063 4.063 25 C -0.113 4.113 26 C -0.043 4.043 27 C -0.108 4.108 28 C -0.122 4.122 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.256 0.744 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 -31.624 -2.218 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.379 5.379 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.151 4.151 13 C -0.150 4.150 14 C 0.048 3.952 15 H 0.088 0.912 16 N -0.351 5.351 17 C 0.388 3.612 18 O -0.439 6.439 19 C -0.147 4.147 20 O -0.056 6.056 21 C -0.042 4.042 22 C -0.234 4.234 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.151 4.151 26 C -0.080 4.080 27 C -0.146 4.146 28 C -0.163 4.163 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.709 -31.216 -2.209 33.412 hybrid contribution -0.122 1.409 -0.027 1.415 sum 11.586 -29.807 -2.236 32.057 Atomic orbital electron populations 1.69829 1.06683 1.25967 1.59879 1.25593 0.96382 1.01191 1.04177 0.85211 0.77139 0.79213 0.78214 1.20320 1.22482 1.20353 1.19610 0.91468 0.85162 1.40500 0.90401 1.42682 1.05431 1.01156 1.88673 1.20483 0.94254 0.84636 0.94210 0.93382 1.21626 0.98521 0.94238 1.00679 1.21740 1.00756 0.95956 0.96513 1.20960 0.95576 0.81960 0.96700 0.91190 1.45874 1.11098 1.04612 1.73506 1.16780 0.86067 0.82146 0.76253 1.90856 1.13666 1.86855 1.52558 1.20909 0.81546 0.94309 1.17970 1.84165 1.21528 1.28431 1.71486 1.24318 1.00966 0.78521 1.00430 1.21786 0.92564 0.99247 1.09760 1.21689 1.00073 0.91701 0.99115 1.20705 0.92010 0.94935 1.02407 1.22410 0.96168 0.94348 1.02136 1.20516 0.94643 0.89553 1.03286 1.21685 0.98503 0.92622 1.01799 1.22016 0.99453 0.95983 0.98875 0.94186 0.79844 0.92402 0.93054 0.90289 0.92471 0.74663 0.72844 0.91632 0.89845 0.90559 0.88170 0.88763 0.89038 0.90216 0.89627 0.93694 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 2 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.14 9.93 84.03 0.83 -12.31 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -38.00 5.12 -322.94 -1.65 -39.66 16 10 C 0.17 6.78 2.77 44.99 0.12 6.90 16 11 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 12 C -0.11 -3.89 5.39 30.59 0.16 -3.72 16 13 C -0.11 -3.15 5.49 30.60 0.17 -2.98 16 14 C 0.15 4.06 2.45 44.99 0.11 4.17 16 15 H 0.07 2.20 7.57 -2.39 -0.02 2.18 16 16 N -0.70 -16.22 5.07 -446.51 -2.27 -18.48 16 17 C 0.60 16.67 7.75 86.44 0.67 17.34 16 18 O -0.56 -19.61 16.53 -4.32 -0.07 -19.68 16 19 C -0.10 -2.27 7.13 24.06 0.17 -2.10 16 20 O -0.16 -2.88 10.40 -5.47 -0.06 -2.94 16 21 C 0.03 0.32 12.08 67.10 0.81 1.13 16 22 C -0.23 -3.48 6.93 -19.94 -0.14 -3.62 16 23 C -0.12 -2.66 6.66 -19.66 -0.13 -2.79 16 24 C -0.06 -1.18 6.76 30.44 0.21 -0.97 16 25 C -0.11 -1.23 7.05 31.52 0.22 -1.01 16 26 C -0.04 -0.40 6.76 30.45 0.21 -0.20 16 27 C -0.11 -2.69 5.39 30.61 0.17 -2.52 16 28 C -0.12 -4.22 5.51 30.61 0.17 -4.05 16 29 H 0.25 15.18 8.31 -92.70 -0.77 14.40 16 30 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.42 7.30 8.36 -92.71 -0.78 6.53 16 36 H 0.26 0.40 8.06 -2.91 -0.02 0.38 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -73.74 374.60 1.98 -71.76 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.50 Total: 31.88 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.22 Total: -11.02 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.64 Total: -118.64 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.13 Total: -22.61 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.74 1.98 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034700220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.430 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds