Wall clock time and date at job start Tue Mar 31 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 16 16 N 1.46496 * 109.47313 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00354 * 84.99862 * 16 14 13 18 18 O 1.21612 * 119.99766 * 0.02562 * 17 16 14 19 19 C 1.47386 * 120.00169 * 179.97438 * 17 16 14 20 20 C 1.47016 * 127.19088 * 359.68973 * 19 17 16 21 21 C 1.34181 * 105.95381 * 179.83046 * 20 19 17 22 22 O 1.34218 * 109.12201 * 0.43284 * 21 20 19 23 23 C 1.33658 * 110.90891 * 359.70993 * 22 21 20 24 24 C 1.50700 * 125.80348 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.49713 * 8.74735 * 24 23 22 26 26 C 1.53001 * 117.49975 * 300.09219 * 24 23 22 27 27 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 28 28 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 29 29 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 33 33 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 35 35 H 0.97007 * 119.99693 * 264.99991 * 16 14 13 36 36 H 1.07998 * 127.02430 * 359.97438 * 20 19 17 37 37 H 1.07993 * 125.44324 * 180.14439 * 21 20 19 38 38 H 1.08993 * 115.55092 * 154.41839 * 24 23 22 39 39 H 1.09006 * 117.49850 * 0.02562 * 25 24 23 40 40 H 1.09003 * 117.49937 * 145.01416 * 25 24 23 41 41 H 1.09001 * 117.49795 * 214.98059 * 26 24 23 42 42 H 1.09005 * 117.50023 * 359.97137 * 26 24 23 43 43 H 1.09001 * 109.47375 * 180.02562 * 27 14 13 44 44 H 1.09002 * 109.47497 * 59.99850 * 27 14 13 45 45 H 1.09002 * 109.47075 * 299.99543 * 28 10 9 46 46 H 1.08996 * 109.47407 * 60.00500 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 1 1.4000 -6.5626 1.4159 16 7 3.0435 -7.7245 0.8271 17 6 3.0345 -8.5076 1.9239 18 8 2.4176 -8.1613 2.9131 19 6 3.7712 -9.7841 1.9242 20 6 4.5574 -10.3566 0.8216 21 6 5.0438 -11.5198 1.2807 22 8 4.6215 -11.7061 2.5411 23 6 3.8614 -10.6839 2.9455 24 6 3.2134 -10.5486 4.2994 25 6 3.6024 -11.5664 5.3735 26 6 2.2204 -11.6343 4.7190 27 6 1.9469 -6.0771 -0.6104 28 6 1.1808 -4.7521 -0.6103 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 3.0467 -3.2553 1.8709 32 1 1.5111 -4.1418 2.0259 33 1 3.4462 -5.6305 2.4602 34 1 4.0981 -5.2536 0.8472 35 1 3.5352 -8.0008 0.0379 36 1 4.7136 -9.9274 -0.1570 37 1 5.6708 -12.2000 0.7235 38 1 3.0099 -9.5280 4.6233 39 1 4.3272 -12.3336 5.1010 40 1 3.6544 -11.2154 6.4041 41 1 1.3636 -11.3279 5.3192 42 1 2.0353 -12.4462 4.0156 43 1 1.3220 -6.8575 -1.0448 44 1 2.8576 -5.9704 -1.1998 45 1 0.2701 -4.8584 -0.0208 46 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034719388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:02 Heat of formation + Delta-G solvation = -0.560827 kcal Electronic energy + Delta-G solvation = -26178.487952 eV Core-core repulsion = 22456.118002 eV Total energy + Delta-G solvation = -3722.369950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90784 -39.77240 -37.89499 -37.35793 -34.80552 -33.43651 -32.69575 -30.57890 -30.36814 -29.99899 -27.44465 -24.45761 -23.36860 -23.09877 -22.71568 -22.28492 -21.31541 -20.45074 -20.06334 -19.32458 -18.11905 -17.00283 -16.58368 -16.28092 -16.14392 -15.65381 -15.18175 -14.87871 -14.71415 -14.10536 -13.89047 -13.72764 -13.53328 -13.25749 -12.97842 -12.89527 -12.56468 -12.34362 -11.98864 -11.92055 -11.77288 -11.39686 -11.27716 -11.00842 -10.81648 -10.77973 -10.72893 -10.63767 -10.19006 -10.11145 -10.06403 -9.91780 -9.72720 -9.55442 -8.97752 -8.82341 -8.71486 -6.91128 -5.72670 -3.01016 1.07181 1.74675 2.42211 3.18099 3.24108 3.46221 3.50605 3.51578 3.56998 4.00868 4.36560 4.53810 4.58874 4.60486 4.62555 4.88877 4.97286 5.08568 5.10085 5.27265 5.30801 5.40506 5.44053 5.55140 5.65073 5.69053 5.71548 5.73768 5.76100 5.79730 5.90594 5.91391 5.95759 6.07016 6.27605 6.31556 6.34582 6.52615 6.60737 6.68384 6.72297 6.77160 7.02743 7.18848 7.52759 7.73198 8.23285 8.46351 9.57070 10.16048 10.50599 11.50098 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002284 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.654221 B =12257.706676 C =12621.963577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.147 3.853 15 H 0.088 0.912 16 N -0.718 5.718 17 C 0.588 3.412 18 O -0.539 6.539 19 C -0.236 4.236 20 C -0.188 4.188 21 C -0.039 4.039 22 O -0.176 6.176 23 C 0.107 3.893 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.159 4.159 27 C -0.119 4.119 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.158 0.842 37 H 0.208 0.792 38 H 0.154 0.846 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -27.733 3.198 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.043 3.957 15 H 0.106 0.894 16 N -0.367 5.367 17 C 0.376 3.624 18 O -0.417 6.417 19 C -0.240 4.240 20 C -0.207 4.207 21 C -0.105 4.105 22 O -0.072 6.072 23 C 0.054 3.946 24 C -0.106 4.106 25 C -0.208 4.208 26 C -0.196 4.196 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.175 0.825 37 H 0.225 0.775 38 H 0.171 0.829 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.860 -27.553 4.044 29.223 hybrid contribution 0.570 0.943 -0.713 1.313 sum 9.430 -26.610 3.331 28.427 Atomic orbital electron populations 1.69649 1.05084 1.25686 1.57827 1.24735 0.95504 0.97638 1.03197 0.86287 0.78523 0.83700 0.77805 1.21334 1.21737 1.21322 1.19197 0.90926 0.84185 1.42485 0.91307 1.42426 1.05784 0.99794 1.88577 1.20238 0.94263 0.85957 0.92798 0.93643 1.22221 0.99765 0.94498 1.00792 1.21900 0.98555 0.95348 1.00461 1.21119 0.95455 0.81625 0.97506 0.89358 1.45942 1.53197 1.21756 1.15844 1.17162 0.79824 0.82237 0.83186 1.90765 1.43936 1.73858 1.33190 1.21162 1.08574 0.98884 0.95374 1.22881 1.01314 0.96511 0.99997 1.23847 1.03626 1.00008 0.83006 1.83719 1.52945 1.41513 1.29054 1.21707 0.92441 0.85423 0.95032 1.20852 1.03046 0.99082 0.87648 1.23086 0.98685 1.01321 0.97745 1.23066 0.93692 0.99675 1.03148 1.21759 1.00801 0.98279 0.94885 1.21761 0.98941 0.93444 1.01755 0.93516 0.78309 0.91839 0.92475 0.92353 0.92367 0.76954 0.82455 0.77523 0.82896 0.88163 0.87638 0.87416 0.88480 0.91897 0.91607 0.91943 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.27 5.12 -53.42 -0.27 -18.55 16 10 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.44 5.50 -26.73 -0.15 -2.58 16 13 C -0.12 -1.88 5.49 -26.73 -0.15 -2.03 16 14 C 0.15 2.00 2.45 -67.93 -0.17 1.84 16 15 H 0.09 1.39 7.57 -51.93 -0.39 0.99 16 16 N -0.72 -8.43 5.07 -54.90 -0.28 -8.70 16 17 C 0.59 8.00 7.78 -12.54 -0.10 7.90 16 18 O -0.54 -8.99 14.58 5.27 0.08 -8.91 16 19 C -0.24 -2.70 6.31 -103.27 -0.65 -3.36 16 20 C -0.19 -1.54 10.60 -37.46 -0.40 -1.94 16 21 C -0.04 -0.28 12.03 29.30 0.35 0.07 16 22 O -0.18 -1.67 10.23 7.63 0.08 -1.59 16 23 C 0.11 1.18 6.85 -34.97 -0.24 0.94 16 24 C -0.09 -0.90 5.62 -91.77 -0.52 -1.42 16 25 C -0.17 -1.29 10.17 -26.70 -0.27 -1.57 16 26 C -0.16 -1.28 10.24 -26.70 -0.27 -1.56 16 27 C -0.12 -1.50 5.39 -26.70 -0.14 -1.64 16 28 C -0.12 -1.94 5.40 -26.70 -0.14 -2.08 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.54 7.78 -40.82 -0.32 3.22 16 36 H 0.16 0.87 7.74 -52.49 -0.41 0.47 16 37 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.15 1.80 6.66 -51.93 -0.35 1.45 16 39 H 0.10 0.72 7.96 -51.93 -0.41 0.30 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -33.28 378.32 -9.50 -42.78 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.23 Total: 10.86 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.28 Total: -11.41 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.17 Total: -55.00 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.15 Total: -10.51 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.28 -9.50 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034719388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.220 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds