Wall clock time and date at job start Tue Mar 31 2020 12:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 16 16 N 1.46496 * 109.47313 * 180.02562 * 14 13 12 17 17 C 1.34773 * 120.00354 * 84.99862 * 16 14 13 18 18 O 1.21612 * 119.99766 * 0.02562 * 17 16 14 19 19 C 1.47386 * 120.00169 * 179.97438 * 17 16 14 20 20 C 1.47016 * 127.19088 * 359.68973 * 19 17 16 21 21 C 1.34181 * 105.95381 * 179.83046 * 20 19 17 22 22 O 1.34218 * 109.12201 * 0.43284 * 21 20 19 23 23 C 1.33658 * 110.90891 * 359.70993 * 22 21 20 24 24 C 1.50700 * 125.80348 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.49713 * 8.74735 * 24 23 22 26 26 C 1.53001 * 117.49975 * 300.09219 * 24 23 22 27 27 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 28 28 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 29 29 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 33 33 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 35 35 H 0.97007 * 119.99693 * 264.99991 * 16 14 13 36 36 H 1.07998 * 127.02430 * 359.97438 * 20 19 17 37 37 H 1.07993 * 125.44324 * 180.14439 * 21 20 19 38 38 H 1.08993 * 115.55092 * 154.41839 * 24 23 22 39 39 H 1.09006 * 117.49850 * 0.02562 * 25 24 23 40 40 H 1.09003 * 117.49937 * 145.01416 * 25 24 23 41 41 H 1.09001 * 117.49795 * 214.98059 * 26 24 23 42 42 H 1.09005 * 117.50023 * 359.97137 * 26 24 23 43 43 H 1.09001 * 109.47375 * 180.02562 * 27 14 13 44 44 H 1.09002 * 109.47497 * 59.99850 * 27 14 13 45 45 H 1.09002 * 109.47075 * 299.99543 * 28 10 9 46 46 H 1.08996 * 109.47407 * 60.00500 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 1 1.4000 -6.5626 1.4159 16 7 3.0435 -7.7245 0.8271 17 6 3.0345 -8.5076 1.9239 18 8 2.4176 -8.1613 2.9131 19 6 3.7712 -9.7841 1.9242 20 6 4.5574 -10.3566 0.8216 21 6 5.0438 -11.5198 1.2807 22 8 4.6215 -11.7061 2.5411 23 6 3.8614 -10.6839 2.9455 24 6 3.2134 -10.5486 4.2994 25 6 3.6024 -11.5664 5.3735 26 6 2.2204 -11.6343 4.7190 27 6 1.9469 -6.0771 -0.6104 28 6 1.1808 -4.7521 -0.6103 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 3.0467 -3.2553 1.8709 32 1 1.5111 -4.1418 2.0259 33 1 3.4462 -5.6305 2.4602 34 1 4.0981 -5.2536 0.8472 35 1 3.5352 -8.0008 0.0379 36 1 4.7136 -9.9274 -0.1570 37 1 5.6708 -12.2000 0.7235 38 1 3.0099 -9.5280 4.6233 39 1 4.3272 -12.3336 5.1010 40 1 3.6544 -11.2154 6.4041 41 1 1.3636 -11.3279 5.3192 42 1 2.0353 -12.4462 4.0156 43 1 1.3220 -6.8575 -1.0448 44 1 2.8576 -5.9704 -1.1998 45 1 0.2701 -4.8584 -0.0208 46 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034719388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:02 Heat of formation + Delta-G solvation = -21.481295 kcal Electronic energy + Delta-G solvation = -26179.395132 eV Core-core repulsion = 22456.118002 eV Total energy + Delta-G solvation = -3723.277130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.58645 -40.89410 -39.20486 -38.04977 -36.34932 -34.73757 -33.83166 -32.31446 -31.69712 -30.68102 -29.00859 -25.90268 -24.76432 -23.84374 -23.60258 -23.34523 -22.47078 -21.45536 -21.19316 -20.48483 -19.18124 -18.75905 -17.33797 -17.26891 -17.08598 -16.79759 -16.37250 -15.96727 -15.78058 -15.53852 -15.35035 -15.06256 -14.83332 -14.58750 -14.05345 -13.95040 -13.53841 -13.42424 -13.20043 -13.09310 -13.03934 -12.79904 -12.49585 -12.42307 -12.31618 -12.18007 -12.04539 -11.94315 -11.66746 -11.49122 -11.45497 -11.20681 -10.96996 -10.83320 -10.79414 -10.04673 -9.42943 -8.99088 -7.92800 -5.20993 0.26654 1.14299 1.46616 1.49808 1.55693 1.75010 2.22298 2.30474 2.57189 2.88084 3.38393 3.39717 3.67726 3.72968 3.79125 3.86943 3.90480 3.95563 3.98859 4.23659 4.29211 4.36715 4.39868 4.50998 4.54272 4.59014 4.65153 4.67949 4.76976 4.84198 4.87217 4.99440 5.02607 5.06016 5.11556 5.14412 5.15493 5.24713 5.27483 5.39486 5.48162 5.54498 5.55214 5.63774 6.03514 6.29847 6.59919 7.25697 7.35192 8.12957 8.35449 9.30740 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002284 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.654221 B =12257.706676 C =12621.963577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.173 3.827 11 H 0.048 0.952 12 C -0.122 4.122 13 C -0.111 4.111 14 C 0.154 3.846 15 H 0.064 0.936 16 N -0.703 5.703 17 C 0.583 3.417 18 O -0.580 6.580 19 C -0.262 4.262 20 C -0.194 4.194 21 C -0.029 4.029 22 O -0.180 6.180 23 C 0.096 3.904 24 C -0.116 4.116 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.105 4.105 28 C -0.113 4.113 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.414 0.586 36 H 0.185 0.815 37 H 0.252 0.748 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 -30.075 1.810 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.050 3.950 15 H 0.083 0.917 16 N -0.353 5.353 17 C 0.372 3.628 18 O -0.462 6.462 19 C -0.266 4.266 20 C -0.213 4.213 21 C -0.094 4.094 22 O -0.076 6.076 23 C 0.043 3.957 24 C -0.134 4.134 25 C -0.190 4.190 26 C -0.191 4.191 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.203 0.797 37 H 0.268 0.732 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.071 0.929 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.113 -29.948 2.625 32.051 hybrid contribution -0.072 1.583 -0.251 1.605 sum 11.041 -28.364 2.374 30.530 Atomic orbital electron populations 1.69812 1.06596 1.25997 1.59817 1.25555 0.96376 1.01067 1.04102 0.85243 0.77206 0.79370 0.78161 1.20147 1.22274 1.20717 1.19588 0.91370 0.85326 1.40618 0.90741 1.42669 1.05445 1.01127 1.88599 1.20482 0.94548 0.85022 0.93455 0.93384 1.22025 0.98954 0.95780 0.99545 1.21759 0.98966 0.93951 1.00378 1.20854 0.94339 0.81975 0.97851 0.91728 1.45697 1.52819 1.20609 1.16206 1.17563 0.79399 0.82995 0.82796 1.90746 1.45759 1.74926 1.34734 1.21190 1.09841 0.98305 0.97303 1.23192 1.00935 0.96823 1.00335 1.24751 1.02559 1.00155 0.81893 1.83734 1.52622 1.40945 1.30328 1.21812 0.92782 0.85914 0.95233 1.20756 1.05311 0.98611 0.88740 1.23169 0.98277 0.99948 0.97597 1.23143 0.94131 0.98719 1.03117 1.21656 1.01744 0.96647 0.94247 1.21648 0.98359 0.94079 1.01085 0.94124 0.79719 0.94121 0.94258 0.93574 0.90633 0.74852 0.79746 0.73230 0.85398 0.87373 0.86408 0.86867 0.88011 0.89380 0.89319 0.92885 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.24 -13.36 9.93 84.03 0.83 -12.52 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.94 5.12 -322.94 -1.65 -39.59 16 10 C 0.17 6.80 2.77 44.99 0.12 6.93 16 11 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 12 C -0.12 -4.62 5.50 30.59 0.17 -4.45 16 13 C -0.11 -3.35 5.49 30.60 0.17 -3.18 16 14 C 0.15 4.06 2.45 44.99 0.11 4.17 16 15 H 0.06 2.05 7.57 -2.39 -0.02 2.03 16 16 N -0.70 -15.32 5.07 -445.85 -2.26 -17.58 16 17 C 0.58 15.73 7.78 86.65 0.67 16.40 16 18 O -0.58 -20.16 14.58 -4.07 -0.06 -20.22 16 19 C -0.26 -5.75 6.31 -18.99 -0.12 -5.87 16 20 C -0.19 -2.60 10.60 23.65 0.25 -2.35 16 21 C -0.03 -0.31 12.03 66.89 0.80 0.49 16 22 O -0.18 -3.05 10.23 4.39 0.04 -3.00 16 23 C 0.10 2.05 6.85 25.26 0.17 2.23 16 24 C -0.12 -2.41 5.62 -11.54 -0.06 -2.48 16 25 C -0.15 -2.18 10.17 30.62 0.31 -1.86 16 26 C -0.15 -2.43 10.24 30.62 0.31 -2.12 16 27 C -0.10 -2.37 5.39 30.61 0.17 -2.20 16 28 C -0.11 -3.55 5.40 30.61 0.17 -3.38 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.55 7.80 -92.71 -0.72 19.82 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 6.07 7.78 -92.70 -0.72 5.35 16 36 H 0.19 1.28 7.74 -2.91 -0.02 1.25 16 37 H 0.25 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.13 3.28 6.66 -2.39 -0.02 3.26 16 39 H 0.11 1.36 7.96 -2.38 -0.02 1.35 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -74.98 378.32 2.48 -72.50 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.45 Total: 33.63 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.55 Total: -14.36 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.63 Total: -117.48 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.01 Total: -23.22 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -74.98 2.48 -72.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034719388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.023 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds