Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34778 * 120.55101 * 234.36495 * 16 15 14 18 18 O 1.21275 * 120.00277 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99612 * 359.97438 * 17 16 15 20 20 C 1.50710 * 109.46897 * 180.02562 * 19 17 16 21 21 C 1.34505 * 125.78957 * 90.00105 * 20 19 17 22 22 C 1.41382 * 106.84137 * 180.02562 * 21 20 19 23 23 C 1.34512 * 106.84049 * 359.97438 * 22 21 20 24 24 O 1.34298 * 125.78663 * 269.69076 * 20 19 17 25 25 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 26 26 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 27 27 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 28 28 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 29 29 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 30 30 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 31 31 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 32 32 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 33 33 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 34 34 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 35 35 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 36 36 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 37 37 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 38 38 H 1.09003 * 109.47413 * 299.99447 * 19 17 16 39 39 H 1.08995 * 109.47525 * 60.00239 * 19 17 16 40 40 H 1.08000 * 126.58191 * 0.02930 * 21 20 19 41 41 H 1.07998 * 126.58217 * 179.97438 * 22 21 20 42 42 H 1.08001 * 125.79359 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.60337 * 185.89135 * 25 16 15 44 44 H 1.09002 * 109.60479 * 65.40491 * 25 16 15 45 45 H 1.08999 * 109.47619 * 184.07927 * 26 12 11 46 46 H 1.08999 * 109.47536 * 304.09031 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1760 -3.6278 -3.6940 18 8 7.8264 -3.8971 -4.8237 19 6 9.4503 -4.2116 -3.1403 20 6 10.0960 -5.0877 -4.1827 21 6 10.9903 -4.6860 -5.1036 22 6 11.3283 -5.8247 -5.8704 23 6 10.6207 -6.8543 -5.3718 24 8 9.8804 -6.4032 -4.3460 25 6 6.1806 -2.2304 -3.4615 26 6 5.0368 -2.5641 -2.4962 27 1 -0.4851 -0.8367 -0.0742 28 1 3.7018 0.2046 -1.8060 29 1 4.0979 0.7436 -0.1504 30 1 5.9893 -0.2047 -1.9662 31 1 6.1910 -0.2924 -0.1853 32 1 4.6231 -2.3967 0.9205 33 1 3.7422 -3.3008 -0.3493 34 1 6.9282 -2.4528 0.3930 35 1 6.5287 -3.8836 -0.5879 36 1 8.7155 -3.0580 -1.2929 37 1 8.0691 -1.4096 -1.5003 38 1 10.1324 -3.4052 -2.8709 39 1 9.2231 -4.8062 -2.2555 40 1 11.3762 -3.6856 -5.2325 41 1 12.0216 -5.8610 -6.6977 42 1 10.6470 -7.8721 -5.7321 43 1 5.9675 -2.6561 -4.4420 44 1 6.2849 -1.1486 -3.5448 45 1 4.8588 -3.6394 -2.5017 46 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035241591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = 18.144741 kcal Electronic energy + Delta-G solvation = -27246.176090 eV Core-core repulsion = 23524.617274 eV Total energy + Delta-G solvation = -3721.558816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.76528 -40.59514 -38.86986 -36.09035 -33.51731 -33.20736 -32.50188 -31.33644 -30.99180 -29.08238 -27.81520 -26.76320 -23.81839 -23.36949 -22.94539 -21.96447 -21.12202 -20.48308 -19.80585 -18.31192 -17.63228 -17.51760 -17.01125 -16.14163 -15.74809 -15.73631 -15.41940 -15.16147 -14.52293 -14.18303 -13.80282 -13.76832 -13.56631 -13.23358 -13.12287 -13.03006 -12.90769 -12.77712 -12.58291 -12.29620 -12.03624 -11.81687 -11.46354 -11.30987 -11.18001 -10.96910 -10.48223 -10.38327 -10.25696 -10.11803 -10.02904 -9.86865 -9.31041 -8.95214 -8.73031 -8.67188 -8.65642 -7.01378 -6.29914 -3.21171 1.48903 2.38130 2.43472 2.68302 3.00103 3.41466 3.48914 3.71491 4.24448 4.35360 4.61285 4.63685 4.67582 4.74237 4.80054 4.88788 4.95200 4.99322 5.00073 5.12106 5.21017 5.28066 5.36846 5.50715 5.58220 5.61293 5.66995 5.69245 5.74620 5.77898 5.86852 5.89649 5.94925 6.02590 6.22216 6.28573 6.29938 6.32568 6.39719 6.51154 6.63653 6.75438 6.77328 6.92143 7.23889 7.68820 7.99724 8.34709 9.05519 9.57288 10.24666 11.20786 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.002688 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.054911 B =10415.566142 C =10500.001985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.023 4.023 3 Si 1.073 2.927 4 H -0.303 1.303 5 H -0.299 1.299 6 H -0.287 1.287 7 C -0.319 4.319 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.112 3.888 11 C -0.123 4.123 12 C -0.072 4.072 13 C 0.147 3.853 14 C -0.118 4.118 15 C 0.105 3.895 16 N -0.606 5.606 17 C 0.515 3.485 18 O -0.533 6.533 19 C -0.061 4.061 20 C 0.007 3.993 21 C -0.198 4.198 22 C -0.214 4.214 23 C -0.039 4.039 24 O -0.172 6.172 25 C 0.112 3.888 26 C -0.112 4.112 27 H 0.261 0.739 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.219 -8.856 -6.314 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.232 1.232 5 H -0.228 1.228 6 H -0.214 1.214 7 C -0.447 4.447 8 H 0.094 0.906 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.160 4.160 12 C -0.073 4.073 13 C 0.021 3.979 14 C -0.157 4.157 15 C -0.017 4.017 16 N -0.340 5.340 17 C 0.302 3.698 18 O -0.410 6.410 19 C -0.101 4.101 20 C -0.044 4.044 21 C -0.217 4.217 22 C -0.233 4.233 23 C -0.107 4.107 24 O -0.068 6.068 25 C -0.010 4.010 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 24.514 -7.531 -6.655 26.494 hybrid contribution 0.316 -1.596 -0.047 1.628 sum 24.829 -9.128 -6.703 27.290 Atomic orbital electron populations 1.70889 1.05736 1.29225 1.51327 1.25854 0.96499 1.00906 0.98969 0.83796 0.73038 0.76230 0.76190 1.23163 1.22839 1.21431 1.20164 0.81774 0.95960 1.46772 0.90551 1.44854 1.05656 1.08677 1.74736 1.21985 0.90491 0.91765 0.97043 1.22658 0.97457 0.94762 1.01163 1.21108 0.95088 0.95215 0.95891 1.21542 0.89520 0.91994 0.94861 1.21745 0.94149 1.01136 0.98649 1.21875 0.97591 1.01399 0.80868 1.48119 1.24028 1.47362 1.14521 1.20329 0.85023 0.78698 0.85766 1.90733 1.71817 1.59621 1.18793 1.20147 0.95543 0.97864 0.96528 1.21508 1.00088 0.82027 1.00747 1.21512 1.02086 1.00241 0.97857 1.21795 1.04924 0.92863 1.03724 1.23999 0.95861 1.00288 0.90510 1.83992 1.55273 1.23268 1.44274 1.21760 0.82667 0.98153 0.98430 1.21642 0.98057 1.01636 0.93634 0.92904 0.93846 0.95661 0.91310 0.91508 0.95888 0.93927 0.90262 0.91413 0.89930 0.90689 0.85942 0.86988 0.83634 0.83493 0.78142 0.89119 0.91103 0.91838 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 3 Si 1.07 26.89 24.53 -169.99 -4.17 22.72 16 4 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 5 H -0.30 -7.24 6.84 56.52 0.39 -6.85 16 6 H -0.29 -6.54 5.43 56.52 0.31 -6.23 16 7 C -0.32 -9.09 10.56 -15.06 -0.16 -9.25 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 9 N -0.61 -14.56 3.31 -170.17 -0.56 -15.12 16 10 C 0.11 2.34 4.24 -2.96 -0.01 2.33 16 11 C -0.12 -1.86 4.91 -25.24 -0.12 -1.98 16 12 C -0.07 -1.04 0.55 -153.98 -0.08 -1.12 16 13 C 0.15 2.79 6.16 -2.74 -0.02 2.77 16 14 C -0.12 -1.25 4.84 -27.01 -0.13 -1.38 16 15 C 0.11 0.89 6.07 -3.63 -0.02 0.87 16 16 N -0.61 -6.76 2.96 -172.58 -0.51 -7.27 16 17 C 0.51 6.28 7.69 -10.98 -0.08 6.19 16 18 O -0.53 -8.83 15.44 5.56 0.09 -8.75 16 19 C -0.06 -0.52 4.58 -29.03 -0.13 -0.66 16 20 C 0.01 0.08 5.81 -35.62 -0.21 -0.13 16 21 C -0.20 -2.05 10.81 -39.71 -0.43 -2.48 16 22 C -0.21 -2.01 10.91 -39.70 -0.43 -2.45 16 23 C -0.04 -0.36 12.09 29.41 0.36 0.00 16 24 O -0.17 -2.03 10.65 5.71 0.06 -1.97 16 25 C 0.11 1.44 6.12 -3.63 -0.02 1.41 16 26 C -0.11 -1.63 4.87 -27.01 -0.13 -1.77 16 27 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 28 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 29 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 30 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 31 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 32 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 33 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.45 5.91 -51.93 -0.31 0.15 16 37 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 38 H 0.12 0.66 7.93 -51.93 -0.41 0.25 16 39 H 0.11 0.75 7.70 -51.93 -0.40 0.35 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.09 1.29 6.99 -51.93 -0.36 0.92 16 44 H 0.07 0.86 6.55 -51.93 -0.34 0.52 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.49 7.82 -51.93 -0.41 1.08 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -36.00 352.30 -7.72 -43.72 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.96 Total: -1.57 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.73 Total: -8.42 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.31 Total: -51.03 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.15 Total: -10.72 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -4.17 Total: 22.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.00 -7.72 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035241591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.865 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds