Wall clock time and date at job start Tue Mar 31 2020 12:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47088 * 5.28789 * 3 2 1 5 5 H 1.48495 * 109.46844 * 125.28667 * 3 2 1 6 6 H 1.48497 * 109.46908 * 245.28684 * 3 2 1 7 7 C 1.38811 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 345.64942 * 7 2 1 9 9 N 1.36935 * 119.99964 * 165.65470 * 7 2 1 10 10 C 1.47083 * 125.62931 * 348.94815 * 9 7 2 11 11 C 1.54457 * 107.29725 * 180.96847 * 10 9 7 12 12 C 1.54385 * 102.87109 * 21.50085 * 11 10 9 13 13 C 1.47575 * 125.62495 * 168.63854 * 9 7 2 14 14 C 1.52103 * 110.51270 * 207.36010 * 12 11 10 15 15 C 1.53353 * 109.44168 * 295.90713 * 14 12 11 16 16 N 1.46928 * 108.68597 * 306.70339 * 15 14 12 17 17 C 1.34778 * 120.55101 * 234.36495 * 16 15 14 18 18 O 1.21275 * 120.00277 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99612 * 359.97438 * 17 16 15 20 20 C 1.50710 * 109.46897 * 180.02562 * 19 17 16 21 21 C 1.34505 * 125.78957 * 90.00105 * 20 19 17 22 22 C 1.41382 * 106.84137 * 180.02562 * 21 20 19 23 23 C 1.34512 * 106.84049 * 359.97438 * 22 21 20 24 24 O 1.34298 * 125.78663 * 269.69076 * 20 19 17 25 25 C 1.46928 * 118.89841 * 54.34776 * 16 15 14 26 26 C 1.52110 * 110.50739 * 83.33374 * 12 11 10 27 27 H 0.97002 * 120.00420 * 174.93157 * 1 2 3 28 28 H 1.09003 * 109.87408 * 300.38969 * 10 9 7 29 29 H 1.09002 * 109.87658 * 61.53556 * 10 9 7 30 30 H 1.08995 * 110.73251 * 139.85226 * 11 10 9 31 31 H 1.09004 * 110.72660 * 263.15810 * 11 10 9 32 32 H 1.09003 * 110.37719 * 275.51894 * 13 9 7 33 33 H 1.08995 * 110.38134 * 37.87499 * 13 9 7 34 34 H 1.08994 * 109.47603 * 55.89370 * 14 12 11 35 35 H 1.09001 * 109.48068 * 175.91999 * 14 12 11 36 36 H 1.08992 * 109.59858 * 186.93829 * 15 14 12 37 37 H 1.08995 * 109.59725 * 66.46106 * 15 14 12 38 38 H 1.09003 * 109.47413 * 299.99447 * 19 17 16 39 39 H 1.08995 * 109.47525 * 60.00239 * 19 17 16 40 40 H 1.08000 * 126.58191 * 0.02930 * 21 20 19 41 41 H 1.07998 * 126.58217 * 179.97438 * 22 21 20 42 42 H 1.08001 * 125.79359 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.60337 * 185.89135 * 25 16 15 44 44 H 1.09002 * 109.60479 * 65.40491 * 25 16 15 45 45 H 1.08999 * 109.47619 * 184.07927 * 26 12 11 46 46 H 1.08999 * 109.47536 * 304.09031 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2903 2.7435 0.1290 5 1 3.1981 1.6420 1.1428 6 1 3.0046 1.7537 -1.2718 7 6 2.0102 -1.2021 -0.0005 8 1 1.4955 -2.1230 0.2309 9 7 3.3476 -1.2205 -0.2944 10 6 4.1193 -0.0961 -0.8451 11 6 5.5723 -0.5850 -1.0337 12 6 5.4140 -2.1196 -1.0913 13 6 4.2536 -2.3698 -0.1047 14 6 6.6835 -2.8048 -0.6091 15 6 7.8369 -2.4726 -1.5636 16 7 7.4250 -2.8065 -2.9338 17 6 8.1760 -3.6278 -3.6940 18 8 7.8264 -3.8971 -4.8237 19 6 9.4503 -4.2116 -3.1403 20 6 10.0960 -5.0877 -4.1827 21 6 10.9903 -4.6860 -5.1036 22 6 11.3283 -5.8247 -5.8704 23 6 10.6207 -6.8543 -5.3718 24 8 9.8804 -6.4032 -4.3460 25 6 6.1806 -2.2304 -3.4615 26 6 5.0368 -2.5641 -2.4962 27 1 -0.4851 -0.8367 -0.0742 28 1 3.7018 0.2046 -1.8060 29 1 4.0979 0.7436 -0.1504 30 1 5.9893 -0.2047 -1.9662 31 1 6.1910 -0.2924 -0.1853 32 1 4.6231 -2.3967 0.9205 33 1 3.7422 -3.3008 -0.3493 34 1 6.9282 -2.4528 0.3930 35 1 6.5287 -3.8836 -0.5879 36 1 8.7155 -3.0580 -1.2929 37 1 8.0691 -1.4096 -1.5003 38 1 10.1324 -3.4052 -2.8709 39 1 9.2231 -4.8062 -2.2555 40 1 11.3762 -3.6856 -5.2325 41 1 12.0216 -5.8610 -6.6977 42 1 10.6470 -7.8721 -5.7321 43 1 5.9675 -2.6561 -4.4420 44 1 6.2849 -1.1486 -3.5448 45 1 4.8588 -3.6394 -2.5017 46 1 4.1320 -2.0443 -2.8112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035241591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:46 Heat of formation + Delta-G solvation = -6.736720 kcal Electronic energy + Delta-G solvation = -27247.255031 eV Core-core repulsion = 23524.617274 eV Total energy + Delta-G solvation = -3722.637757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46753 -41.62378 -40.05914 -37.38135 -34.97863 -34.16405 -33.42595 -32.85615 -31.94762 -30.63300 -28.91392 -27.80744 -25.41512 -24.42122 -24.11239 -22.66742 -22.38638 -21.77340 -20.74442 -19.83650 -18.91376 -18.34304 -18.13260 -17.09416 -16.95273 -16.78812 -16.51980 -16.45372 -15.54544 -15.31153 -15.08393 -15.02116 -14.87317 -14.57848 -14.34880 -13.96898 -13.71915 -13.63382 -13.60717 -13.49143 -13.14326 -13.02810 -12.86531 -12.68650 -12.55959 -12.15973 -11.89388 -11.67715 -11.56764 -11.43279 -11.30471 -10.97207 -10.91633 -10.78790 -10.61172 -9.63236 -9.36528 -9.05434 -8.65649 -5.46771 0.77524 1.39877 1.49930 1.57567 1.68175 1.72539 1.99189 2.25841 2.55811 3.12343 3.33638 3.50903 3.56081 3.68833 3.76892 3.86685 4.08401 4.16185 4.17048 4.17587 4.26864 4.32342 4.38351 4.46764 4.47944 4.61089 4.65660 4.72187 4.75542 4.79815 4.89068 4.91937 4.95888 5.03347 5.06219 5.09292 5.10913 5.23831 5.26371 5.39913 5.44799 5.53552 5.61564 5.64131 6.10638 6.22464 6.40858 6.83576 7.13260 7.46777 8.11361 8.87231 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.002688 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.054911 B =10415.566142 C =10500.001985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.085 4.085 3 Si 1.115 2.885 4 H -0.317 1.317 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.307 4.307 8 H 0.039 0.961 9 N -0.633 5.633 10 C 0.099 3.901 11 C -0.109 4.109 12 C -0.059 4.059 13 C 0.139 3.861 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.603 5.603 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.054 4.054 20 C -0.017 4.017 21 C -0.211 4.211 22 C -0.229 4.229 23 C -0.047 4.047 24 O -0.196 6.196 25 C 0.120 3.880 26 C -0.106 4.106 27 H 0.245 0.755 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.232 0.768 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.051 0.949 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.140 -8.161 -5.818 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.277 4.277 3 Si 0.943 3.057 4 H -0.246 1.246 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.436 4.436 8 H 0.057 0.943 9 N -0.360 5.360 10 C -0.025 4.025 11 C -0.146 4.146 12 C -0.060 4.060 13 C 0.014 3.986 14 C -0.152 4.152 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.301 3.699 18 O -0.468 6.468 19 C -0.093 4.093 20 C -0.067 4.067 21 C -0.231 4.231 22 C -0.248 4.248 23 C -0.114 4.114 24 O -0.093 6.093 25 C -0.002 4.002 26 C -0.144 4.144 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.115 0.885 38 H 0.180 0.820 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.248 0.752 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 29.502 -6.867 -6.138 30.906 hybrid contribution -1.276 -1.986 -0.228 2.371 sum 28.226 -8.852 -6.366 30.259 Atomic orbital electron populations 1.71000 1.07135 1.28300 1.54851 1.27223 0.96506 1.04711 0.99260 0.83326 0.72346 0.71632 0.78437 1.24627 1.20806 1.17653 1.20046 0.84431 0.94436 1.44714 0.94271 1.44942 1.04792 1.11396 1.74911 1.22160 0.93784 0.90929 0.95607 1.22685 0.93755 0.94302 1.03863 1.21029 0.95224 0.95748 0.93974 1.21786 0.90325 0.89574 0.96869 1.21748 0.92426 1.00740 1.00286 1.22188 0.97779 1.03598 0.78174 1.48187 1.22926 1.46771 1.15670 1.21017 0.85891 0.77930 0.85099 1.90716 1.73292 1.61414 1.21341 1.20306 0.94001 0.98732 0.96234 1.22033 1.00690 0.82085 1.01882 1.21879 1.02175 1.01152 0.97853 1.22174 1.05464 0.92797 1.04362 1.24718 0.95132 1.01788 0.89795 1.83979 1.56049 1.24020 1.45202 1.21510 0.83019 0.98846 0.96866 1.21518 0.97682 1.00403 0.94797 0.94622 0.95562 0.95998 0.88640 0.88434 0.94697 0.95935 0.88015 0.91434 0.85797 0.88537 0.82028 0.84636 0.82286 0.81594 0.75171 0.91197 0.89689 0.93067 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.02 13.70 21.65 0.30 -63.72 16 2 C -0.09 -5.19 5.50 84.86 0.47 -4.72 16 3 Si 1.11 54.35 24.53 68.60 1.68 56.03 16 4 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 5 H -0.28 -12.68 6.84 99.48 0.68 -12.00 16 6 H -0.25 -10.74 5.43 99.48 0.54 -10.20 16 7 C -0.31 -18.19 10.56 84.03 0.89 -17.30 16 8 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 9 N -0.63 -30.16 3.31 -692.29 -2.29 -32.45 16 10 C 0.10 3.94 4.24 86.76 0.37 4.31 16 11 C -0.11 -2.80 4.91 31.56 0.16 -2.65 16 12 C -0.06 -1.53 0.55 -51.84 -0.03 -1.56 16 13 C 0.14 5.18 6.16 86.63 0.53 5.71 16 14 C -0.11 -1.83 4.84 30.42 0.15 -1.68 16 15 C 0.10 1.11 6.07 86.42 0.52 1.64 16 16 N -0.60 -11.21 2.96 -818.31 -2.42 -13.63 16 17 C 0.51 11.05 7.69 87.66 0.67 11.73 16 18 O -0.59 -19.05 15.44 -3.02 -0.05 -19.10 16 19 C -0.05 -0.70 4.58 29.11 0.13 -0.57 16 20 C -0.02 -0.33 5.81 24.83 0.14 -0.19 16 21 C -0.21 -3.96 10.81 22.19 0.24 -3.72 16 22 C -0.23 -3.93 10.91 22.19 0.24 -3.69 16 23 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 24 O -0.20 -4.35 10.65 -2.48 -0.03 -4.37 16 25 C 0.12 2.88 6.12 86.41 0.53 3.41 16 26 C -0.11 -3.02 4.87 30.42 0.15 -2.88 16 27 H 0.24 16.33 8.73 -92.71 -0.81 15.52 16 28 H 0.03 1.13 6.78 -2.39 -0.02 1.11 16 29 H 0.02 0.93 3.81 -2.39 -0.01 0.92 16 30 H 0.10 2.02 6.17 -2.39 -0.01 2.00 16 31 H 0.10 2.01 7.98 -2.38 -0.02 2.00 16 32 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 33 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 34 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 0.42 5.91 -2.39 -0.01 0.40 16 37 H 0.10 0.75 7.62 -2.39 -0.02 0.74 16 38 H 0.16 0.78 7.93 -2.39 -0.02 0.76 16 39 H 0.14 1.13 7.70 -2.39 -0.02 1.11 16 40 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.07 1.99 6.99 -2.39 -0.02 1.97 16 44 H 0.09 1.80 6.55 -2.39 -0.02 1.79 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.05 1.84 7.82 -2.39 -0.02 1.83 16 Total: -1.00 -85.87 352.30 3.91 -81.96 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.75 Total: 7.46 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.97 Total: -12.16 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.42 Total: -109.81 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.68 Total: 56.03 kcal Total: -85.87 3.91 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035241591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.220 kcal (2) G-P(sol) polarization free energy of solvation -85.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds