Wall clock time and date at job start Tue Mar 31 2020 12:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38372 * 119.85767 * 2 1 4 4 C 1.37937 * 120.14860 * 179.76818 * 3 2 1 5 5 C 1.39596 * 119.84897 * 0.48952 * 4 3 2 6 6 C 1.47851 * 120.14412 * 179.79374 * 5 4 3 7 7 O 1.21555 * 119.99863 * 179.72148 * 6 5 4 8 8 N 1.34772 * 119.99786 * 359.44267 * 6 5 4 9 9 C 1.46503 * 120.00096 * 180.28009 * 8 6 5 10 10 C 1.52997 * 109.47112 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.51489 * 60.00339 * 10 9 8 12 12 C 1.53300 * 109.51100 * 180.09695 * 10 9 8 13 13 N 1.47151 * 108.38371 * 172.22408 * 12 10 9 14 14 C 1.36938 * 120.97772 * 129.48898 * 13 12 10 15 15 H 1.08001 * 119.99799 * 206.21607 * 14 13 12 16 16 C 1.38813 * 120.00077 * 26.22443 * 14 13 12 17 17 N 1.31618 * 120.00167 * 16.91776 * 16 14 13 18 18 Si 1.86799 * 119.99717 * 196.91728 * 16 14 13 19 19 H 1.48498 * 109.47591 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47318 * 120.00055 * 18 16 14 21 21 H 1.48500 * 109.47103 * 239.99555 * 18 16 14 22 22 C 1.47149 * 118.03595 * 309.46632 * 13 12 10 23 23 C 1.53289 * 108.38382 * 50.53861 * 22 13 12 24 24 O 1.42956 * 109.26369 * 307.71679 * 23 22 13 25 25 C 1.39551 * 119.71227 * 359.51069 * 5 4 3 26 26 C 1.37983 * 119.85408 * 0.25707 * 25 5 4 27 27 C 1.50697 * 119.92706 * 179.97438 * 26 25 5 28 28 H 1.09001 * 109.46834 * 269.97737 * 1 2 3 29 29 H 1.08997 * 109.46958 * 29.97427 * 1 2 3 30 30 H 1.09000 * 109.47578 * 149.97676 * 1 2 3 31 31 H 1.08000 * 119.92722 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.07851 * 180.27269 * 4 3 2 33 33 H 0.97007 * 120.00151 * 0.27278 * 8 6 5 34 34 H 1.08996 * 109.46762 * 300.00026 * 9 8 6 35 35 H 1.08998 * 109.47122 * 59.99793 * 9 8 6 36 36 H 1.08997 * 109.68572 * 291.95280 * 12 10 9 37 37 H 1.09006 * 109.67938 * 52.50131 * 12 10 9 38 38 H 0.96999 * 120.00000 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.67972 * 170.25629 * 22 13 12 40 40 H 1.08995 * 109.68495 * 290.77437 * 22 13 12 41 41 H 1.08998 * 109.51553 * 67.61937 * 23 22 13 42 42 H 1.09005 * 109.51072 * 187.71926 * 23 22 13 43 43 H 1.08007 * 120.07700 * 180.23422 * 25 5 4 44 44 H 1.08993 * 109.47567 * 90.00156 * 27 26 25 45 45 H 1.09002 * 109.46783 * 209.99993 * 27 26 25 46 46 H 1.08995 * 109.47410 * 329.99585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0048 5 6 4.2762 -0.0001 -0.0006 6 6 5.7547 -0.0002 -0.0001 7 8 6.3624 -1.0530 0.0003 8 7 6.4286 1.1669 -0.0057 9 6 7.8936 1.1669 -0.0114 10 6 8.4036 2.6094 -0.0177 11 1 8.0441 3.1266 0.8719 12 6 9.9366 2.6104 -0.0261 13 7 10.3987 3.9938 -0.2210 14 6 11.3337 4.5485 0.6117 15 1 11.3644 5.6189 0.7522 16 6 12.2421 3.7350 1.2750 17 7 12.4356 2.4978 0.8699 18 14 13.1898 4.3964 2.7426 19 1 12.7937 5.8054 2.9936 20 1 12.8835 3.5745 3.9409 21 1 14.6463 4.3351 2.4596 22 6 9.8267 4.7633 -1.3372 23 6 8.2992 4.6574 -1.2648 24 8 7.9251 3.2799 -1.1861 25 6 3.5754 -1.2069 -0.0006 26 6 2.1955 -1.1999 -0.0005 27 6 1.4371 -2.5021 -0.0011 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6524 2.1333 0.0004 32 1 4.1118 2.1444 0.0093 33 1 5.9436 2.0070 -0.0061 34 1 8.2603 0.6553 0.8785 35 1 8.2535 0.6508 -0.9014 36 1 10.3092 2.2293 0.9246 37 1 10.2996 1.9838 -0.8409 38 1 13.0701 1.9292 1.3337 39 1 10.1266 5.8081 -1.2546 40 1 10.1792 4.3540 -2.2839 41 1 7.9393 5.1828 -0.3803 42 1 7.8606 5.1041 -2.1572 43 1 4.1118 -2.1444 -0.0010 44 1 1.2542 -2.8165 1.0264 45 1 0.4851 -2.3678 -0.5148 46 1 2.0231 -3.2637 -0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035598631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:55 Heat of formation + Delta-G solvation = -40.042089 kcal Electronic energy + Delta-G solvation = -26269.663795 eV Core-core repulsion = 22545.581809 eV Total energy + Delta-G solvation = -3724.081986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33807 -38.97198 -38.26965 -34.86498 -34.35607 -33.67573 -32.35917 -31.37064 -30.87996 -28.16215 -27.55980 -26.83230 -25.26391 -23.33666 -22.64119 -22.09941 -21.57389 -20.10674 -19.46605 -17.73176 -16.95982 -16.32396 -15.99779 -15.52108 -15.34448 -14.98944 -14.86919 -14.69789 -14.40588 -14.30414 -13.96075 -13.72358 -13.37118 -13.25416 -13.11716 -12.87600 -12.83564 -12.80124 -12.34760 -12.27031 -11.82632 -11.56794 -11.52960 -11.19225 -11.12057 -10.87685 -10.74035 -10.43837 -10.26943 -10.07157 -9.83626 -9.66780 -9.10969 -9.05301 -8.94610 -8.71715 -8.57657 -6.78625 -5.87001 -3.30863 0.70388 1.14969 2.84066 3.27472 3.33255 3.40491 3.42392 3.73828 4.22829 4.41659 4.47434 4.50980 4.64339 4.80812 4.85319 5.02949 5.15961 5.18215 5.25403 5.33375 5.35873 5.46818 5.49273 5.52720 5.55082 5.60900 5.81026 5.83607 5.87101 5.91165 6.00512 6.09458 6.11644 6.19409 6.22917 6.33732 6.35882 6.47808 6.63261 6.71545 6.75866 7.04366 7.45479 7.65449 7.68857 7.81325 8.30178 8.33709 9.08122 9.71134 10.28046 11.21129 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.002524 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.046424 B =11089.102485 C =11613.362698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.125 4.125 4 C -0.087 4.087 5 C -0.130 4.130 6 C 0.553 3.447 7 O -0.542 6.542 8 N -0.714 5.714 9 C 0.132 3.868 10 C 0.055 3.945 11 H 0.056 0.944 12 C 0.152 3.848 13 N -0.595 5.595 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.905 3.095 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.050 3.950 24 O -0.390 6.390 25 C -0.058 4.058 26 C -0.098 4.098 27 C -0.117 4.117 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.809 -3.595 -1.759 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.106 4.106 5 C -0.133 4.133 6 C 0.340 3.660 7 O -0.421 6.421 8 N -0.365 5.365 9 C 0.009 3.991 10 C -0.005 4.005 11 H 0.074 0.926 12 C 0.026 3.974 13 N -0.318 5.318 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.216 1.216 22 C -0.018 4.018 23 C -0.028 4.028 24 O -0.310 6.310 25 C -0.077 4.077 26 C -0.098 4.098 27 C -0.173 4.173 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.237 0.763 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.298 -4.526 -1.829 23.804 hybrid contribution 0.661 0.993 0.899 1.493 sum -22.637 -3.533 -0.930 22.930 Atomic orbital electron populations 1.20918 0.91079 1.03089 1.02579 1.19958 0.96170 0.92639 0.97993 1.20949 0.93833 0.97691 1.01810 1.21326 0.94495 0.97172 0.97571 1.19988 0.93064 0.94356 1.05935 1.18272 0.86981 0.84011 0.76748 1.90768 1.69868 1.31181 1.50251 1.45897 1.08007 1.08296 1.74261 1.21454 0.78163 0.96293 1.03230 1.23154 0.98837 0.90697 0.87777 0.92609 1.21311 0.86521 0.86687 1.02903 1.44059 1.46446 1.11024 1.30313 1.19224 1.07789 0.92247 1.19295 0.91291 1.25068 0.97117 0.96787 1.00679 1.70026 1.36774 1.07683 1.40042 0.86194 0.79461 0.78347 0.82591 1.20231 1.21410 1.21593 1.21601 0.91671 0.96700 0.91786 1.23003 0.97178 0.82335 1.00280 1.87776 1.75918 1.23603 1.43676 1.21152 0.93049 0.97909 0.95547 1.19726 0.93356 0.95199 1.01553 1.20860 0.99993 0.93909 1.02535 0.90849 0.91383 0.90931 0.85454 0.85476 0.76345 0.89821 0.90565 0.88542 0.95006 0.93415 0.91963 0.95531 0.93877 0.89997 0.84651 0.91013 0.91067 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.59 36.01 0.35 -0.36 16 2 C -0.07 -0.59 5.89 -104.53 -0.62 -1.21 16 3 C -0.12 -1.13 9.68 -39.64 -0.38 -1.52 16 4 C -0.09 -0.92 9.54 -39.19 -0.37 -1.30 16 5 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 6 C 0.55 8.81 7.77 -12.33 -0.10 8.72 16 7 O -0.54 -10.48 16.35 5.32 0.09 -10.39 16 8 N -0.71 -10.76 5.40 -61.25 -0.33 -11.09 16 9 C 0.13 2.30 5.37 -4.04 -0.02 2.28 16 10 C 0.05 1.04 2.86 -26.58 -0.08 0.96 16 11 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 12 C 0.15 3.59 4.73 -3.53 -0.02 3.58 16 13 N -0.59 -14.77 3.05 -171.83 -0.52 -15.30 16 14 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 15 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 16 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 17 N -0.90 -25.86 11.14 55.49 0.62 -25.25 16 18 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 C 0.11 2.25 6.74 -3.54 -0.02 2.22 16 23 C 0.05 0.86 6.98 37.31 0.26 1.12 16 24 O -0.39 -7.21 10.14 -35.23 -0.36 -7.57 16 25 C -0.06 -0.70 9.24 -39.19 -0.36 -1.06 16 26 C -0.10 -0.96 5.87 -104.68 -0.61 -1.57 16 27 C -0.12 -0.81 9.60 36.00 0.35 -0.47 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 5.93 -51.93 -0.31 0.05 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.15 6.41 -52.48 -0.34 0.82 16 33 H 0.40 5.19 6.39 -40.82 -0.26 4.93 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 39 H 0.06 1.21 7.96 -51.92 -0.41 0.80 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.14 1.67 7.65 -52.48 -0.40 1.26 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.39 5.93 -51.93 -0.31 0.08 16 46 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -32.26 371.42 -9.38 -41.64 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.96 Total: 4.02 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.48 Total: 2.00 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.24 Total: -51.63 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.27 Total: -17.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.26 -9.38 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035598631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.601 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds