Wall clock time and date at job start Tue Mar 31 2020 12:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38372 * 119.85767 * 2 1 4 4 C 1.37937 * 120.14860 * 179.76818 * 3 2 1 5 5 C 1.39596 * 119.84897 * 0.48952 * 4 3 2 6 6 C 1.47851 * 120.14412 * 179.79374 * 5 4 3 7 7 O 1.21555 * 119.99863 * 179.72148 * 6 5 4 8 8 N 1.34772 * 119.99786 * 359.44267 * 6 5 4 9 9 C 1.46503 * 120.00096 * 180.28009 * 8 6 5 10 10 C 1.52997 * 109.47112 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.51489 * 60.00339 * 10 9 8 12 12 C 1.53300 * 109.51100 * 180.09695 * 10 9 8 13 13 N 1.47151 * 108.38371 * 172.22408 * 12 10 9 14 14 C 1.36938 * 120.97772 * 129.48898 * 13 12 10 15 15 H 1.08001 * 119.99799 * 206.21607 * 14 13 12 16 16 C 1.38813 * 120.00077 * 26.22443 * 14 13 12 17 17 N 1.31618 * 120.00167 * 16.91776 * 16 14 13 18 18 Si 1.86799 * 119.99717 * 196.91728 * 16 14 13 19 19 H 1.48498 * 109.47591 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47318 * 120.00055 * 18 16 14 21 21 H 1.48500 * 109.47103 * 239.99555 * 18 16 14 22 22 C 1.47149 * 118.03595 * 309.46632 * 13 12 10 23 23 C 1.53289 * 108.38382 * 50.53861 * 22 13 12 24 24 O 1.42956 * 109.26369 * 307.71679 * 23 22 13 25 25 C 1.39551 * 119.71227 * 359.51069 * 5 4 3 26 26 C 1.37983 * 119.85408 * 0.25707 * 25 5 4 27 27 C 1.50697 * 119.92706 * 179.97438 * 26 25 5 28 28 H 1.09001 * 109.46834 * 269.97737 * 1 2 3 29 29 H 1.08997 * 109.46958 * 29.97427 * 1 2 3 30 30 H 1.09000 * 109.47578 * 149.97676 * 1 2 3 31 31 H 1.08000 * 119.92722 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.07851 * 180.27269 * 4 3 2 33 33 H 0.97007 * 120.00151 * 0.27278 * 8 6 5 34 34 H 1.08996 * 109.46762 * 300.00026 * 9 8 6 35 35 H 1.08998 * 109.47122 * 59.99793 * 9 8 6 36 36 H 1.08997 * 109.68572 * 291.95280 * 12 10 9 37 37 H 1.09006 * 109.67938 * 52.50131 * 12 10 9 38 38 H 0.96999 * 120.00000 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.67972 * 170.25629 * 22 13 12 40 40 H 1.08995 * 109.68495 * 290.77437 * 22 13 12 41 41 H 1.08998 * 109.51553 * 67.61937 * 23 22 13 42 42 H 1.09005 * 109.51072 * 187.71926 * 23 22 13 43 43 H 1.08007 * 120.07700 * 180.23422 * 25 5 4 44 44 H 1.08993 * 109.47567 * 90.00156 * 27 26 25 45 45 H 1.09002 * 109.46783 * 209.99993 * 27 26 25 46 46 H 1.08995 * 109.47410 * 329.99585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0048 5 6 4.2762 -0.0001 -0.0006 6 6 5.7547 -0.0002 -0.0001 7 8 6.3624 -1.0530 0.0003 8 7 6.4286 1.1669 -0.0057 9 6 7.8936 1.1669 -0.0114 10 6 8.4036 2.6094 -0.0177 11 1 8.0441 3.1266 0.8719 12 6 9.9366 2.6104 -0.0261 13 7 10.3987 3.9938 -0.2210 14 6 11.3337 4.5485 0.6117 15 1 11.3644 5.6189 0.7522 16 6 12.2421 3.7350 1.2750 17 7 12.4356 2.4978 0.8699 18 14 13.1898 4.3964 2.7426 19 1 12.7937 5.8054 2.9936 20 1 12.8835 3.5745 3.9409 21 1 14.6463 4.3351 2.4596 22 6 9.8267 4.7633 -1.3372 23 6 8.2992 4.6574 -1.2648 24 8 7.9251 3.2799 -1.1861 25 6 3.5754 -1.2069 -0.0006 26 6 2.1955 -1.1999 -0.0005 27 6 1.4371 -2.5021 -0.0011 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6524 2.1333 0.0004 32 1 4.1118 2.1444 0.0093 33 1 5.9436 2.0070 -0.0061 34 1 8.2603 0.6553 0.8785 35 1 8.2535 0.6508 -0.9014 36 1 10.3092 2.2293 0.9246 37 1 10.2996 1.9838 -0.8409 38 1 13.0701 1.9292 1.3337 39 1 10.1266 5.8081 -1.2546 40 1 10.1792 4.3540 -2.2839 41 1 7.9393 5.1828 -0.3803 42 1 7.8606 5.1041 -2.1572 43 1 4.1118 -2.1444 -0.0010 44 1 1.2542 -2.8165 1.0264 45 1 0.4851 -2.3678 -0.5148 46 1 2.0231 -3.2637 -0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035598631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:54 Heat of formation + Delta-G solvation = -60.487327 kcal Electronic energy + Delta-G solvation = -26270.550367 eV Core-core repulsion = 22545.581809 eV Total energy + Delta-G solvation = -3724.968558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.38802 -40.27285 -39.57099 -36.51183 -35.93973 -34.49716 -33.26794 -33.06532 -32.42783 -29.28653 -28.70135 -27.97692 -26.66788 -25.09118 -23.79109 -22.99259 -22.88864 -21.59193 -20.77968 -19.02933 -18.64194 -17.58329 -17.38557 -17.03819 -16.33018 -16.20683 -16.09358 -16.04207 -15.74706 -15.52356 -15.09235 -15.05727 -14.81894 -14.60818 -14.51877 -13.89974 -13.84161 -13.56832 -13.44831 -13.19653 -13.03566 -12.79508 -12.71454 -12.64144 -12.52567 -12.24194 -12.18948 -12.07839 -11.91858 -11.86040 -11.34994 -11.10434 -10.81475 -10.57682 -10.27183 -9.80531 -9.54703 -8.77950 -7.93131 -5.40803 -0.17051 0.38105 1.44624 1.46631 1.57209 1.78418 2.03068 2.46469 2.75027 2.83190 3.21800 3.46814 3.63909 3.79496 3.93008 4.01435 4.01798 4.04831 4.23438 4.25440 4.30176 4.43005 4.48891 4.56468 4.62549 4.67403 4.73460 4.78974 4.81883 4.83192 4.94547 4.96063 4.99289 5.05280 5.18904 5.21040 5.26316 5.31273 5.37324 5.41633 5.50270 5.58623 5.64885 5.98006 6.24031 6.30368 6.46102 7.03280 7.11170 7.72355 8.26052 9.13015 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.002524 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.046424 B =11089.102485 C =11613.362698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.062 4.062 3 C -0.125 4.125 4 C -0.088 4.088 5 C -0.156 4.156 6 C 0.551 3.449 7 O -0.587 6.587 8 N -0.703 5.703 9 C 0.142 3.858 10 C 0.078 3.922 11 H 0.067 0.933 12 C 0.159 3.841 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.076 0.924 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.262 1.262 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.101 3.899 23 C 0.057 3.943 24 O -0.390 6.390 25 C -0.076 4.076 26 C -0.104 4.104 27 C -0.116 4.116 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.142 0.858 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.067 0.933 37 H -0.001 1.001 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.309 -1.615 -1.543 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.159 4.159 6 C 0.340 3.660 7 O -0.469 6.469 8 N -0.354 5.354 9 C 0.018 3.982 10 C 0.018 3.982 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.093 0.907 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.220 1.220 22 C -0.024 4.024 23 C -0.021 4.021 24 O -0.309 6.309 25 C -0.095 4.095 26 C -0.104 4.104 27 C -0.173 4.173 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.160 0.840 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.843 -2.494 -1.631 27.008 hybrid contribution 1.681 0.409 0.752 1.886 sum -25.162 -2.085 -0.879 25.263 Atomic orbital electron populations 1.21012 0.88494 1.04407 1.03689 1.20414 0.98041 0.92059 0.95763 1.21335 0.93202 0.99140 1.00560 1.21510 0.95443 0.96603 0.97064 1.19822 0.90984 0.95949 1.09128 1.18811 0.88401 0.83270 0.75471 1.90735 1.71065 1.32671 1.52422 1.45697 1.06769 1.08953 1.73996 1.21141 0.79818 0.95145 1.02128 1.22738 0.95293 0.91601 0.88560 0.91550 1.21082 0.89676 0.85975 1.00035 1.44363 1.46582 1.11434 1.31505 1.19594 1.07802 0.92656 1.19339 0.90667 1.25869 0.98514 0.97107 1.03299 1.70191 1.37746 1.08997 1.41324 0.85160 0.77606 0.78314 0.79080 1.18647 1.21632 1.22045 1.21839 0.94164 0.96619 0.89806 1.23099 0.94402 0.81723 1.02854 1.87792 1.75359 1.24565 1.43225 1.21198 0.94361 0.97126 0.96850 1.20027 0.92439 0.97048 1.00859 1.20927 1.00473 0.92477 1.03373 0.89631 0.89941 0.89838 0.82460 0.84038 0.74807 0.90576 0.92308 0.91440 0.98250 0.93951 0.90786 0.96733 0.92570 0.85981 0.86244 0.90120 0.89000 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.59 71.24 0.68 -0.23 16 2 C -0.06 -0.92 5.89 -19.81 -0.12 -1.03 16 3 C -0.12 -1.87 9.68 22.23 0.22 -1.65 16 4 C -0.09 -1.70 9.54 22.53 0.21 -1.49 16 5 C -0.16 -4.07 5.87 -20.09 -0.12 -4.19 16 6 C 0.55 18.15 7.77 86.79 0.67 18.83 16 7 O -0.59 -24.09 16.35 -3.89 -0.06 -24.15 16 8 N -0.70 -21.27 5.40 -465.97 -2.52 -23.79 16 9 C 0.14 5.13 5.37 86.38 0.46 5.59 16 10 C 0.08 2.95 2.86 30.69 0.09 3.03 16 11 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 12 C 0.16 7.78 4.73 86.36 0.41 8.19 16 13 N -0.61 -30.81 3.05 -697.54 -2.13 -32.93 16 14 C -0.26 -14.32 9.65 84.03 0.81 -13.51 16 15 H 0.08 3.90 7.88 -2.91 -0.02 3.88 16 16 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 17 N -0.94 -55.77 11.14 21.65 0.24 -55.53 16 18 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 C 0.10 4.07 6.74 86.35 0.58 4.65 16 23 C 0.06 1.79 6.98 72.08 0.50 2.29 16 24 O -0.39 -13.80 10.14 -148.98 -1.51 -15.31 16 25 C -0.08 -1.87 9.24 22.53 0.21 -1.67 16 26 C -0.10 -1.87 5.87 -19.90 -0.12 -1.99 16 27 C -0.12 -1.41 9.60 71.24 0.68 -0.73 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.08 0.48 5.93 -2.39 -0.01 0.46 16 31 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.14 2.21 6.41 -2.91 -0.02 2.19 16 33 H 0.41 10.19 6.39 -92.70 -0.59 9.60 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 3.68 6.14 -2.39 -0.01 3.67 16 37 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 39 H 0.07 2.77 7.96 -2.38 -0.02 2.75 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 43 H 0.12 3.19 7.65 -2.91 -0.02 3.17 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.72 5.93 -2.39 -0.01 0.71 16 46 H 0.06 0.83 8.08 -2.39 -0.02 0.82 16 Total: -1.00 -72.83 371.42 2.05 -70.78 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.40 Total: 20.84 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.60 Total: 13.61 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.40 Total: -112.25 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.57 Total: -39.46 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.83 2.05 -70.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035598631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.290 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds