Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47077 * 85.01944 * 3 2 1 5 5 H 1.48496 * 109.46859 * 325.02073 * 3 2 1 6 6 H 1.48497 * 109.47235 * 205.01983 * 3 2 1 7 7 C 1.38809 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00588 * 187.32894 * 7 2 1 9 9 N 1.36942 * 119.99937 * 7.33790 * 7 2 1 10 10 C 1.47432 * 126.05380 * 6.27210 * 9 7 2 11 11 C 1.54518 * 107.14028 * 178.31996 * 10 9 7 12 12 C 1.56016 * 102.70299 * 337.49931 * 11 10 9 13 13 H 1.08995 * 113.55659 * 157.21629 * 12 11 10 14 14 C 1.51626 * 105.66580 * 280.81754 * 12 11 10 15 15 N 1.46521 * 109.91330 * 157.33139 * 14 12 11 16 16 C 1.34781 * 121.01194 * 124.47540 * 15 14 12 17 17 O 1.21282 * 119.99709 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00529 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47572 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47449 * 179.97438 * 19 18 16 21 21 C 1.34515 * 125.78818 * 89.71720 * 20 19 18 22 22 C 1.41385 * 106.84090 * 179.89245 * 21 20 19 23 23 C 1.34506 * 106.83822 * 0.37187 * 22 21 20 24 24 O 1.34296 * 108.42423 * 359.77122 * 23 22 21 25 25 C 1.47138 * 117.98101 * 304.45129 * 15 14 12 26 26 C 1.53046 * 107.67513 * 57.45078 * 25 15 14 27 27 C 1.46464 * 126.05874 * 186.58896 * 9 7 2 28 28 H 1.08996 * 108.35004 * 90.11606 * 27 9 7 29 29 H 0.97003 * 120.00126 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.90124 * 297.82707 * 10 9 7 31 31 H 1.09003 * 109.89889 * 59.06795 * 10 9 7 32 32 H 1.09003 * 110.90638 * 219.11130 * 11 10 9 33 33 H 1.08998 * 110.57240 * 95.73739 * 11 10 9 34 34 H 1.08994 * 109.46138 * 37.21703 * 14 12 11 35 35 H 1.09002 * 109.53230 * 277.48852 * 14 12 11 36 36 H 1.08998 * 109.47238 * 300.00487 * 18 16 15 37 37 H 1.09005 * 109.47206 * 59.99545 * 18 16 15 38 38 H 1.09007 * 109.47256 * 299.99982 * 19 18 16 39 39 H 1.09003 * 109.47084 * 60.00208 * 19 18 16 40 40 H 1.08005 * 126.58367 * 0.02562 * 21 20 19 41 41 H 1.08003 * 126.57504 * 180.16376 * 22 21 20 42 42 H 1.08004 * 125.78908 * 179.75355 * 23 22 21 43 43 H 1.09007 * 109.82032 * 297.90661 * 25 15 14 44 44 H 1.09008 * 109.82260 * 176.99323 * 25 15 14 45 45 H 1.09002 * 109.15284 * 185.15835 * 26 25 15 46 46 H 1.09002 * 109.10804 * 65.96176 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5042 2.6199 -0.8026 6 1 3.5964 1.4121 -0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3340 -2.3833 -0.1504 10 6 -0.1020 -2.5287 -0.4511 11 6 -0.3917 -4.0419 -0.5685 12 6 1.0130 -4.6357 -0.8974 13 1 1.1116 -5.6900 -0.6392 14 6 1.2289 -4.3813 -2.3765 15 7 2.6621 -4.3921 -2.6808 16 6 3.1661 -5.2153 -3.6215 17 8 2.4302 -5.9626 -4.2305 18 6 4.6438 -5.2073 -3.9165 19 6 4.9502 -6.2268 -5.0153 20 6 6.4279 -6.2183 -5.3108 21 6 7.3559 -6.9797 -4.7037 22 6 8.6009 -6.6517 -5.2880 23 6 8.3604 -5.7036 -6.2112 24 8 7.0426 -5.4450 -6.2208 25 6 3.5344 -3.4766 -1.9286 26 6 3.3626 -3.7889 -0.4402 27 6 1.9077 -3.7260 -0.0353 28 1 1.8242 -4.0469 1.0030 29 1 -0.4850 0.8401 0.0004 30 1 -0.6954 -2.0966 0.3546 31 1 -0.3356 -2.0338 -1.3938 32 1 -1.0951 -4.2417 -1.3769 33 1 -0.7659 -4.4346 0.3769 34 1 0.8105 -3.4108 -2.6430 35 1 0.7308 -5.1583 -2.9564 36 1 4.9425 -4.2132 -4.2491 37 1 5.1960 -5.4694 -3.0139 38 1 4.6516 -7.2208 -4.6822 39 1 4.3981 -5.9650 -5.9180 40 1 7.1829 -7.7042 -3.9217 41 1 9.5613 -7.0780 -5.0381 42 1 9.1014 -5.2303 -6.8384 43 1 3.2444 -2.4444 -2.1255 44 1 4.5730 -3.6316 -2.2212 45 1 3.9283 -3.0639 0.1450 46 1 3.7469 -4.7889 -0.2388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036644967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = 4.388750 kcal Electronic energy + Delta-G solvation = -27296.822006 eV Core-core repulsion = 23574.666685 eV Total energy + Delta-G solvation = -3722.155321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71800 -40.19442 -38.36460 -35.01896 -34.21185 -33.00488 -32.75802 -31.66153 -29.68941 -28.87701 -27.55363 -25.59169 -24.58122 -23.28874 -22.53668 -21.91267 -20.54623 -20.09106 -19.48188 -18.20272 -17.64467 -16.77257 -16.36413 -16.22181 -15.64834 -15.59944 -15.12259 -14.67324 -14.26813 -14.02453 -13.87003 -13.57297 -13.02344 -12.99448 -12.87594 -12.75796 -12.62081 -12.38791 -12.17583 -11.97853 -11.57927 -11.43218 -11.20492 -11.06613 -11.02612 -10.84294 -10.68007 -10.17769 -10.11086 -10.07868 -9.96338 -9.64847 -9.63872 -9.50660 -8.64459 -8.61327 -8.21465 -6.84002 -5.74834 -3.09180 1.55420 2.43728 2.80773 2.82646 3.33163 3.36158 3.41419 3.43877 4.41981 4.45407 4.76644 4.81549 4.87063 4.90010 5.04053 5.13171 5.24143 5.33621 5.42523 5.50779 5.53744 5.56267 5.60048 5.64437 5.74648 5.80507 5.83583 5.88190 5.99682 6.01716 6.11535 6.25080 6.27635 6.32888 6.33932 6.40660 6.52161 6.67956 6.75385 6.87536 6.92214 6.98365 7.45629 7.63059 7.74866 7.78402 8.22112 8.38268 9.16180 9.79471 10.47326 11.36287 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003316 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.306521 B = 8440.751790 C = 9584.487945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.126 3.874 15 N -0.600 5.600 16 C 0.514 3.486 17 O -0.556 6.556 18 C -0.136 4.136 19 C -0.024 4.024 20 C -0.005 4.005 21 C -0.213 4.213 22 C -0.214 4.214 23 C -0.047 4.047 24 O -0.175 6.175 25 C 0.112 3.888 26 C -0.129 4.129 27 C 0.171 3.829 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.294 -12.174 -7.664 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.004 3.996 15 N -0.331 5.331 16 C 0.302 3.698 17 O -0.436 6.436 18 C -0.176 4.176 19 C -0.061 4.061 20 C -0.055 4.055 21 C -0.232 4.232 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.071 6.071 25 C -0.011 4.011 26 C -0.169 4.169 27 C 0.063 3.937 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.218 0.782 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.691 -12.093 -8.157 18.694 hybrid contribution 0.750 0.930 0.315 1.236 sum 12.441 -11.164 -7.842 18.464 Atomic orbital electron populations 1.69954 1.04925 1.25006 1.56533 1.24780 0.95575 0.97608 1.02322 0.86196 0.78697 0.83947 0.77483 1.21722 1.21747 1.20656 1.18943 0.90843 0.82415 1.43262 0.90367 1.44300 1.05128 0.99361 1.83046 1.21284 0.85440 0.88529 0.99945 1.23143 0.95177 0.99450 1.00285 1.22448 0.97594 0.98496 0.95121 0.90504 1.21299 0.80030 1.02860 0.95366 1.48122 1.09337 1.38517 1.37121 1.20419 0.90104 0.79822 0.79460 1.90662 1.61107 1.41027 1.50794 1.21669 0.94035 1.01586 1.00319 1.19863 0.85479 1.01180 0.99626 1.22534 0.95739 0.94658 0.92586 1.21625 0.92201 1.04743 1.04599 1.21838 0.99413 1.01698 1.00392 1.24017 0.82726 1.01494 1.03169 1.84037 1.20195 1.53134 1.49784 1.21819 0.92898 0.94813 0.91544 1.21604 0.98910 1.00765 0.95588 1.20219 0.90768 0.87135 0.95567 0.96387 0.93791 0.92370 0.95111 0.92027 0.92278 0.90523 0.90195 0.88578 0.88505 0.88046 0.89268 0.83461 0.83569 0.78249 0.89220 0.90894 0.90574 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.98 10.54 55.49 0.58 -25.39 16 2 C -0.01 -0.16 5.45 -17.43 -0.10 -0.26 16 3 Si 0.91 21.21 29.56 -169.99 -5.02 16.18 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.23 -5.77 9.07 -15.06 -0.14 -5.90 16 8 H 0.08 1.90 6.67 -52.49 -0.35 1.55 16 9 N -0.59 -13.78 3.12 -164.48 -0.51 -14.30 16 10 C 0.17 3.96 4.69 -2.74 -0.01 3.95 16 11 C -0.14 -2.56 6.25 -24.32 -0.15 -2.71 16 12 C -0.12 -1.99 3.78 -89.18 -0.34 -2.33 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 2.19 5.37 -4.73 -0.03 2.17 16 15 N -0.60 -9.55 2.93 -173.95 -0.51 -10.06 16 16 C 0.51 7.77 7.71 -10.99 -0.08 7.69 16 17 O -0.56 -9.97 15.41 5.56 0.09 -9.89 16 18 C -0.14 -1.55 4.04 -27.89 -0.11 -1.67 16 19 C -0.02 -0.26 5.04 -27.89 -0.14 -0.40 16 20 C 0.00 -0.05 6.58 -35.62 -0.23 -0.29 16 21 C -0.21 -2.16 10.81 -39.70 -0.43 -2.59 16 22 C -0.21 -1.96 10.91 -39.70 -0.43 -2.39 16 23 C -0.05 -0.42 12.09 29.41 0.36 -0.06 16 24 O -0.18 -2.02 10.65 5.73 0.06 -1.96 16 25 C 0.11 1.71 6.27 -3.67 -0.02 1.69 16 26 C -0.13 -2.09 5.17 -27.64 -0.14 -2.24 16 27 C 0.17 3.26 2.89 -68.36 -0.20 3.06 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.06 1.52 7.07 -51.93 -0.37 1.15 16 31 H 0.03 0.78 7.51 -51.93 -0.39 0.39 16 32 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.50 6.76 -51.93 -0.35 1.15 16 35 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 36 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 37 H 0.10 0.97 7.78 -51.93 -0.40 0.56 16 38 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 42 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.09 1.63 7.52 -51.93 -0.39 1.24 16 44 H 0.07 0.89 5.99 -51.92 -0.31 0.58 16 45 H 0.08 1.27 7.02 -51.93 -0.36 0.91 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -30.65 360.02 -9.14 -39.79 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.05 Total: 2.47 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.20 Total: -2.27 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.44 Total: -49.75 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.15 Total: -11.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.65 -9.14 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.182 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds