Wall clock time and date at job start Tue Mar 31 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47077 * 85.01944 * 3 2 1 5 5 H 1.48496 * 109.46859 * 325.02073 * 3 2 1 6 6 H 1.48497 * 109.47235 * 205.01983 * 3 2 1 7 7 C 1.38809 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00588 * 187.32894 * 7 2 1 9 9 N 1.36942 * 119.99937 * 7.33790 * 7 2 1 10 10 C 1.47432 * 126.05380 * 6.27210 * 9 7 2 11 11 C 1.54518 * 107.14028 * 178.31996 * 10 9 7 12 12 C 1.56016 * 102.70299 * 337.49931 * 11 10 9 13 13 H 1.08995 * 113.55659 * 157.21629 * 12 11 10 14 14 C 1.51626 * 105.66580 * 280.81754 * 12 11 10 15 15 N 1.46521 * 109.91330 * 157.33139 * 14 12 11 16 16 C 1.34781 * 121.01194 * 124.47540 * 15 14 12 17 17 O 1.21282 * 119.99709 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00529 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47572 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47449 * 179.97438 * 19 18 16 21 21 C 1.34515 * 125.78818 * 89.71720 * 20 19 18 22 22 C 1.41385 * 106.84090 * 179.89245 * 21 20 19 23 23 C 1.34506 * 106.83822 * 0.37187 * 22 21 20 24 24 O 1.34296 * 108.42423 * 359.77122 * 23 22 21 25 25 C 1.47138 * 117.98101 * 304.45129 * 15 14 12 26 26 C 1.53046 * 107.67513 * 57.45078 * 25 15 14 27 27 C 1.46464 * 126.05874 * 186.58896 * 9 7 2 28 28 H 1.08996 * 108.35004 * 90.11606 * 27 9 7 29 29 H 0.97003 * 120.00126 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.90124 * 297.82707 * 10 9 7 31 31 H 1.09003 * 109.89889 * 59.06795 * 10 9 7 32 32 H 1.09003 * 110.90638 * 219.11130 * 11 10 9 33 33 H 1.08998 * 110.57240 * 95.73739 * 11 10 9 34 34 H 1.08994 * 109.46138 * 37.21703 * 14 12 11 35 35 H 1.09002 * 109.53230 * 277.48852 * 14 12 11 36 36 H 1.08998 * 109.47238 * 300.00487 * 18 16 15 37 37 H 1.09005 * 109.47206 * 59.99545 * 18 16 15 38 38 H 1.09007 * 109.47256 * 299.99982 * 19 18 16 39 39 H 1.09003 * 109.47084 * 60.00208 * 19 18 16 40 40 H 1.08005 * 126.58367 * 0.02562 * 21 20 19 41 41 H 1.08003 * 126.57504 * 180.16376 * 22 21 20 42 42 H 1.08004 * 125.78908 * 179.75355 * 23 22 21 43 43 H 1.09007 * 109.82032 * 297.90661 * 25 15 14 44 44 H 1.09008 * 109.82260 * 176.99323 * 25 15 14 45 45 H 1.09002 * 109.15284 * 185.15835 * 26 25 15 46 46 H 1.09002 * 109.10804 * 65.96176 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5042 2.6199 -0.8026 6 1 3.5964 1.4121 -0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3340 -2.3833 -0.1504 10 6 -0.1020 -2.5287 -0.4511 11 6 -0.3917 -4.0419 -0.5685 12 6 1.0130 -4.6357 -0.8974 13 1 1.1116 -5.6900 -0.6392 14 6 1.2289 -4.3813 -2.3765 15 7 2.6621 -4.3921 -2.6808 16 6 3.1661 -5.2153 -3.6215 17 8 2.4302 -5.9626 -4.2305 18 6 4.6438 -5.2073 -3.9165 19 6 4.9502 -6.2268 -5.0153 20 6 6.4279 -6.2183 -5.3108 21 6 7.3559 -6.9797 -4.7037 22 6 8.6009 -6.6517 -5.2880 23 6 8.3604 -5.7036 -6.2112 24 8 7.0426 -5.4450 -6.2208 25 6 3.5344 -3.4766 -1.9286 26 6 3.3626 -3.7889 -0.4402 27 6 1.9077 -3.7260 -0.0353 28 1 1.8242 -4.0469 1.0030 29 1 -0.4850 0.8401 0.0004 30 1 -0.6954 -2.0966 0.3546 31 1 -0.3356 -2.0338 -1.3938 32 1 -1.0951 -4.2417 -1.3769 33 1 -0.7659 -4.4346 0.3769 34 1 0.8105 -3.4108 -2.6430 35 1 0.7308 -5.1583 -2.9564 36 1 4.9425 -4.2132 -4.2491 37 1 5.1960 -5.4694 -3.0139 38 1 4.6516 -7.2208 -4.6822 39 1 4.3981 -5.9650 -5.9180 40 1 7.1829 -7.7042 -3.9217 41 1 9.5613 -7.0780 -5.0381 42 1 9.1014 -5.2303 -6.8384 43 1 3.2444 -2.4444 -2.1255 44 1 4.5730 -3.6316 -2.2212 45 1 3.9283 -3.0639 0.1450 46 1 3.7469 -4.7889 -0.2388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036644967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:20 Heat of formation + Delta-G solvation = -12.686692 kcal Electronic energy + Delta-G solvation = -27297.562452 eV Core-core repulsion = 23574.666685 eV Total energy + Delta-G solvation = -3722.895767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.44137 -41.53480 -39.78847 -36.48210 -35.15694 -34.55295 -33.65864 -33.17967 -31.21147 -30.03494 -28.96976 -26.99472 -26.09160 -24.53968 -23.94198 -22.61591 -21.84123 -21.31429 -20.77406 -19.59678 -18.63011 -18.21111 -17.68114 -17.19175 -16.94869 -16.75103 -16.57207 -16.08997 -15.68168 -15.43453 -15.07787 -14.87709 -14.39798 -14.04849 -13.96808 -13.92035 -13.67795 -13.50845 -13.31293 -13.24400 -12.97307 -12.90134 -12.80814 -12.59156 -12.52825 -12.20111 -12.05577 -11.99082 -11.67721 -11.52960 -11.42475 -11.16954 -10.83038 -10.75524 -10.62916 -9.56963 -9.33627 -8.78308 -7.77656 -5.12136 0.82936 1.48736 1.49467 1.57838 1.63381 1.74231 2.00576 2.24513 2.53789 3.40722 3.46282 3.60640 3.82715 3.89772 3.95374 4.04732 4.09773 4.10485 4.20917 4.24492 4.29340 4.35563 4.47910 4.58691 4.59486 4.63398 4.75597 4.77587 4.85162 4.92684 4.97564 4.99049 5.02025 5.11845 5.15176 5.26803 5.28497 5.29700 5.40884 5.53927 5.59996 5.67473 5.70722 5.81685 6.26360 6.27244 6.52356 7.15254 7.16856 7.85851 8.53253 9.33099 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.003316 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.306521 B = 8440.751790 C = 9584.487945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.304 1.304 6 H -0.262 1.262 7 C -0.217 4.217 8 H 0.092 0.908 9 N -0.607 5.607 10 C 0.181 3.819 11 C -0.130 4.130 12 C -0.101 4.101 13 H 0.105 0.895 14 C 0.133 3.867 15 N -0.603 5.603 16 C 0.514 3.486 17 O -0.586 6.586 18 C -0.126 4.126 19 C -0.017 4.017 20 C -0.026 4.026 21 C -0.214 4.214 22 C -0.227 4.227 23 C -0.047 4.047 24 O -0.196 6.196 25 C 0.117 3.883 26 C -0.125 4.125 27 C 0.162 3.838 28 H 0.014 0.986 29 H 0.242 0.758 30 H 0.018 0.982 31 H -0.005 1.005 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.233 0.767 43 H 0.056 0.944 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.452 -14.003 -7.839 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.187 1.187 7 C -0.346 4.346 8 H 0.110 0.890 9 N -0.332 5.332 10 C 0.056 3.944 11 C -0.169 4.169 12 C -0.121 4.121 13 H 0.123 0.877 14 C 0.010 3.990 15 N -0.334 5.334 16 C 0.304 3.696 17 O -0.467 6.467 18 C -0.166 4.166 19 C -0.055 4.055 20 C -0.076 4.076 21 C -0.233 4.233 22 C -0.246 4.246 23 C -0.114 4.114 24 O -0.093 6.093 25 C -0.005 4.005 26 C -0.164 4.164 27 C 0.055 3.945 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.014 0.986 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.249 0.751 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.090 0.910 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.898 -13.957 -8.327 22.047 hybrid contribution -0.190 1.429 0.341 1.481 sum 14.708 -12.529 -7.986 20.906 Atomic orbital electron populations 1.70179 1.06403 1.24767 1.58990 1.25553 0.96299 1.00788 1.03676 0.85228 0.78157 0.80070 0.76956 1.21938 1.23117 1.18689 1.19369 0.91583 0.83214 1.40460 0.89030 1.44535 1.05416 1.00693 1.82566 1.21003 0.85292 0.91552 0.96573 1.23019 0.96554 0.95626 1.01661 1.22402 0.95898 0.99374 0.94444 0.87719 1.21069 0.81339 1.01108 0.95514 1.48161 1.08650 1.38919 1.37636 1.21045 0.91505 0.78727 0.78273 1.90652 1.62286 1.42196 1.51553 1.21664 0.91068 1.02288 1.01544 1.19737 0.85734 1.01114 0.98866 1.22509 0.95726 0.95791 0.93580 1.21928 0.92470 1.04386 1.04554 1.22191 1.00042 1.01908 1.00418 1.24764 0.82241 1.01226 1.03178 1.84024 1.21428 1.53678 1.50211 1.21788 0.94705 0.92915 0.91076 1.21561 0.96438 1.02526 0.95865 1.20470 0.93100 0.85137 0.95770 0.96852 0.94911 0.96343 0.98635 0.90440 0.90984 0.93660 0.90078 0.87761 0.86078 0.87811 0.90687 0.82141 0.81482 0.75082 0.92522 0.86961 0.90997 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.66 10.54 21.65 0.23 -56.44 16 2 C -0.07 -3.87 5.45 84.86 0.46 -3.41 16 3 Si 0.97 44.43 29.56 68.60 2.03 46.46 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.22 -11.15 9.07 84.03 0.76 -10.39 16 8 H 0.09 4.36 6.67 -2.91 -0.02 4.34 16 9 N -0.61 -28.58 3.12 -674.31 -2.10 -30.69 16 10 C 0.18 8.67 4.69 86.72 0.41 9.07 16 11 C -0.13 -4.64 6.25 32.16 0.20 -4.44 16 12 C -0.10 -3.29 3.78 -9.86 -0.04 -3.32 16 13 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 14 C 0.13 4.49 5.37 85.92 0.46 4.95 16 15 N -0.60 -18.07 2.93 -822.65 -2.41 -20.48 16 16 C 0.51 14.48 7.71 87.65 0.68 15.16 16 17 O -0.59 -20.21 15.41 -3.03 -0.05 -20.26 16 18 C -0.13 -2.51 4.04 29.84 0.12 -2.39 16 19 C -0.02 -0.34 5.04 29.85 0.15 -0.19 16 20 C -0.03 -0.53 6.58 24.83 0.16 -0.37 16 21 C -0.21 -3.77 10.81 22.19 0.24 -3.53 16 22 C -0.23 -3.48 10.91 22.19 0.24 -3.23 16 23 C -0.05 -0.72 12.09 66.97 0.81 0.09 16 24 O -0.20 -4.14 10.65 -2.40 -0.03 -4.17 16 25 C 0.12 3.31 6.27 86.27 0.54 3.85 16 26 C -0.13 -3.68 5.17 30.01 0.16 -3.52 16 27 C 0.16 5.94 2.89 44.73 0.13 6.07 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.02 1.02 7.07 -2.39 -0.02 1.00 16 31 H 0.00 -0.25 7.51 -2.39 -0.02 -0.27 16 32 H 0.08 2.51 7.94 -2.39 -0.02 2.50 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.05 1.82 6.76 -2.39 -0.02 1.80 16 35 H 0.08 2.73 7.00 -2.39 -0.02 2.72 16 36 H 0.10 1.96 7.90 -2.39 -0.02 1.94 16 37 H 0.12 1.87 7.78 -2.38 -0.02 1.85 16 38 H 0.10 2.01 8.10 -2.38 -0.02 1.99 16 39 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.23 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.06 2.00 7.52 -2.38 -0.02 1.98 16 44 H 0.11 2.29 5.99 -2.38 -0.01 2.27 16 45 H 0.07 2.20 7.02 -2.39 -0.02 2.19 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -69.40 360.02 4.13 -65.27 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.97 Total: 15.91 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.48 Total: 4.39 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.28 Total: -107.60 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.43 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.40 4.13 -65.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.585 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds