Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99629 * 2 1 4 4 H 1.48492 * 109.47391 * 274.98575 * 3 2 1 5 5 H 1.48501 * 109.47257 * 34.98777 * 3 2 1 6 6 H 1.48506 * 109.47117 * 154.98274 * 3 2 1 7 7 C 1.38808 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 186.71248 * 7 2 1 9 9 N 1.36931 * 119.99919 * 6.71699 * 7 2 1 10 10 C 1.47437 * 126.05677 * 353.96003 * 9 7 2 11 11 C 1.54501 * 107.15080 * 181.61851 * 10 9 7 12 12 C 1.56015 * 102.62625 * 22.82456 * 11 10 9 13 13 H 1.08992 * 112.90360 * 202.91130 * 12 11 10 14 14 C 1.52738 * 106.47129 * 78.39130 * 12 11 10 15 15 N 1.46522 * 110.47154 * 203.10050 * 14 12 11 16 16 C 1.34780 * 121.01591 * 235.56706 * 15 14 12 17 17 O 1.21285 * 119.99887 * 359.72240 * 16 15 14 18 18 C 1.50698 * 120.00012 * 179.72140 * 16 15 14 19 19 C 1.53003 * 109.46845 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.46844 * 179.97438 * 19 18 16 21 21 C 1.34513 * 125.78387 * 90.00397 * 20 19 18 22 22 C 1.41389 * 106.83482 * 179.73195 * 21 20 19 23 23 C 1.34504 * 106.84134 * 0.02562 * 22 21 20 24 24 O 1.34297 * 108.42514 * 359.97438 * 23 22 21 25 25 C 1.47148 * 117.97105 * 55.29259 * 15 14 12 26 26 C 1.53040 * 107.68881 * 302.83183 * 25 15 14 27 27 C 1.46470 * 126.05657 * 173.98228 * 9 7 2 28 28 H 1.09000 * 108.34786 * 269.12622 * 27 9 7 29 29 H 0.97001 * 120.00475 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.89721 * 300.99599 * 10 9 7 31 31 H 1.08992 * 109.90052 * 62.05534 * 10 9 7 32 32 H 1.08992 * 110.78145 * 141.11394 * 11 10 9 33 33 H 1.09004 * 110.77861 * 264.35740 * 11 10 9 34 34 H 1.09004 * 109.24380 * 82.77887 * 14 12 11 35 35 H 1.08995 * 109.18204 * 323.39022 * 14 12 11 36 36 H 1.08998 * 109.47361 * 60.00160 * 18 16 15 37 37 H 1.08999 * 109.47246 * 299.99810 * 18 16 15 38 38 H 1.09000 * 109.46818 * 60.00666 * 19 18 16 39 39 H 1.08999 * 109.47351 * 300.00121 * 19 18 16 40 40 H 1.07997 * 126.58325 * 359.77128 * 21 20 19 41 41 H 1.08001 * 126.57437 * 179.97438 * 22 21 20 42 42 H 1.08005 * 125.78614 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.81457 * 62.37920 * 25 15 14 44 44 H 1.08998 * 109.81155 * 183.28147 * 25 15 14 45 45 H 1.08999 * 109.14969 * 174.82208 * 26 25 15 46 46 H 1.09007 * 109.14769 * 294.03241 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 -0.0005 8 1 3.0847 -1.2052 0.1088 9 7 1.3327 -2.3838 -0.1398 10 6 -0.1324 -2.5455 -0.1725 11 6 -0.4211 -4.0577 -0.3029 12 6 0.8858 -4.7036 0.2528 13 1 1.0442 -5.7193 -0.1093 14 6 0.7964 -4.6207 1.7753 15 7 2.1338 -4.6775 2.3710 16 6 2.4426 -5.6067 3.2973 17 8 1.6060 -6.4094 3.6534 18 6 3.8273 -5.6483 3.8904 19 6 3.9120 -6.7873 4.9085 20 6 5.2969 -6.8292 5.5012 21 6 5.7023 -6.1687 6.6006 22 6 7.0631 -6.4980 6.7977 23 6 7.4079 -7.3396 5.8068 24 8 6.3342 -7.5368 5.0246 25 6 3.1315 -3.6932 1.9227 26 6 3.2753 -3.8347 0.4057 27 6 1.9351 -3.7113 -0.2821 28 1 2.0724 -3.9137 -1.3443 29 1 -0.4851 0.8400 0.0004 30 1 -0.5686 -2.1627 0.7502 31 1 -0.5456 -2.0110 -1.0278 32 1 -1.2809 -4.3410 0.3041 33 1 -0.5785 -4.3327 -1.3459 34 1 0.2002 -5.4545 2.1461 35 1 0.3158 -3.6833 2.0553 36 1 4.0385 -4.7012 4.3869 37 1 4.5572 -5.8138 3.0980 38 1 3.7007 -7.7345 4.4123 39 1 3.1821 -6.6214 5.7009 40 1 5.1032 -5.5131 7.2152 41 1 7.7031 -6.1414 7.5913 42 1 8.3827 -7.7823 5.6647 43 1 2.7942 -2.6866 2.1696 44 1 4.0887 -3.8916 2.4048 45 1 3.9405 -3.0547 0.0353 46 1 3.7054 -4.8098 0.1767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036644968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = 4.267024 kcal Electronic energy + Delta-G solvation = -27286.474988 eV Core-core repulsion = 23564.314389 eV Total energy + Delta-G solvation = -3722.160599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71309 -40.15230 -38.33921 -35.01486 -34.20142 -32.99136 -32.73963 -31.63959 -29.66899 -28.87327 -27.54729 -25.57747 -24.57379 -23.29454 -22.53816 -21.90782 -20.53854 -20.07301 -19.47302 -18.18387 -17.64333 -16.76759 -16.35856 -16.21644 -15.62635 -15.58574 -15.13050 -14.63030 -14.34935 -13.98849 -13.82300 -13.57502 -13.00126 -12.97324 -12.87676 -12.82880 -12.60291 -12.28166 -12.10833 -12.02702 -11.55909 -11.42273 -11.21648 -11.13368 -11.03955 -10.79481 -10.67782 -10.18924 -10.09180 -10.04805 -9.93775 -9.65927 -9.63761 -9.50884 -8.62314 -8.60530 -8.20226 -6.84587 -5.76466 -3.08339 1.55789 2.44593 2.81350 2.82765 3.34032 3.36292 3.41415 3.44139 4.42630 4.45348 4.77246 4.82226 4.87546 4.90499 5.05493 5.15273 5.23877 5.34910 5.42755 5.50532 5.53278 5.57209 5.59818 5.65415 5.76154 5.81089 5.84655 5.88053 6.00105 6.02256 6.12144 6.25790 6.29366 6.33598 6.34604 6.42020 6.53182 6.68897 6.75778 6.87852 6.93239 6.98637 7.52009 7.60188 7.75759 7.78584 8.21325 8.39142 9.16692 9.79342 10.47528 11.36024 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.003282 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.163404 B = 8528.961446 C = 9643.598319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.117 4.117 13 H 0.076 0.924 14 C 0.126 3.874 15 N -0.599 5.599 16 C 0.514 3.486 17 O -0.556 6.556 18 C -0.136 4.136 19 C -0.024 4.024 20 C -0.005 4.005 21 C -0.212 4.212 22 C -0.214 4.214 23 C -0.047 4.047 24 O -0.176 6.176 25 C 0.112 3.888 26 C -0.129 4.129 27 C 0.171 3.829 28 H 0.017 0.983 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 -12.598 8.581 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.004 3.996 15 N -0.330 5.330 16 C 0.302 3.698 17 O -0.436 6.436 18 C -0.176 4.176 19 C -0.061 4.061 20 C -0.055 4.055 21 C -0.231 4.231 22 C -0.233 4.233 23 C -0.115 4.115 24 O -0.072 6.072 25 C -0.011 4.011 26 C -0.169 4.169 27 C 0.063 3.937 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.928 -12.933 8.525 18.398 hybrid contribution 0.683 1.236 0.064 1.413 sum 10.611 -11.697 8.589 17.977 Atomic orbital electron populations 1.69963 1.04908 1.25032 1.56548 1.24790 0.95610 0.97545 1.02246 0.86196 0.78675 0.83957 0.77499 1.21711 1.21878 1.20660 1.18953 0.90974 0.82324 1.43229 0.90315 1.44318 1.01447 1.00353 1.85809 1.21254 0.84406 0.88377 1.00852 1.23129 0.95911 0.99321 0.99740 1.22664 0.97858 0.98311 0.94873 0.90537 1.21433 0.82943 1.02894 0.92331 1.48084 1.13893 1.31367 1.39644 1.20417 0.89632 0.80352 0.79386 1.90663 1.50792 1.40361 1.61764 1.21670 0.95675 1.00601 0.99649 1.19865 0.87251 1.00037 0.98973 1.22531 0.90037 0.96611 0.96370 1.21639 0.96151 1.05401 0.99922 1.21843 0.96571 1.02881 1.01990 1.24008 0.91419 1.03043 0.93010 1.84030 1.18340 1.56685 1.48143 1.21819 0.90709 0.93443 0.95110 1.21598 0.99267 1.01045 0.94951 1.20232 0.90721 0.86806 0.95964 0.96519 0.93771 0.93897 0.93665 0.92024 0.92328 0.90284 0.90407 0.88466 0.88612 0.89297 0.88019 0.83429 0.83565 0.78254 0.89152 0.90908 0.90544 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 10.42 55.49 0.58 -25.31 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.18 29.56 -169.99 -5.02 16.16 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.23 -5.76 9.03 -15.06 -0.14 -5.90 16 8 H 0.08 1.91 6.66 -52.49 -0.35 1.56 16 9 N -0.59 -13.80 3.12 -164.49 -0.51 -14.32 16 10 C 0.18 4.04 4.65 -2.74 -0.01 4.03 16 11 C -0.14 -2.57 6.28 -24.33 -0.15 -2.73 16 12 C -0.12 -2.01 3.84 -88.62 -0.34 -2.36 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 2.21 5.44 -4.16 -0.02 2.18 16 15 N -0.60 -9.61 2.94 -173.28 -0.51 -10.12 16 16 C 0.51 7.83 7.71 -10.98 -0.08 7.74 16 17 O -0.56 -10.03 15.41 5.55 0.09 -9.94 16 18 C -0.14 -1.56 4.04 -27.88 -0.11 -1.67 16 19 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 20 C -0.01 -0.06 6.58 -35.62 -0.23 -0.29 16 21 C -0.21 -2.20 10.81 -39.70 -0.43 -2.63 16 22 C -0.21 -1.98 10.91 -39.70 -0.43 -2.41 16 23 C -0.05 -0.42 12.09 29.41 0.36 -0.07 16 24 O -0.18 -2.00 10.65 5.73 0.06 -1.93 16 25 C 0.11 1.72 6.27 -3.67 -0.02 1.70 16 26 C -0.13 -2.11 5.16 -27.65 -0.14 -2.25 16 27 C 0.17 3.27 2.85 -68.36 -0.19 3.07 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.04 1.09 7.16 -51.93 -0.37 0.72 16 31 H 0.05 1.17 7.42 -51.93 -0.39 0.79 16 32 H 0.06 1.02 7.97 -51.93 -0.41 0.60 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.08 1.54 6.79 -51.93 -0.35 1.19 16 36 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 37 H 0.10 1.01 7.78 -51.93 -0.40 0.61 16 38 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.20 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.09 1.65 7.48 -51.93 -0.39 1.26 16 44 H 0.07 0.89 5.99 -51.93 -0.31 0.58 16 45 H 0.08 1.28 7.02 -51.93 -0.36 0.92 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -30.54 360.01 -9.15 -39.69 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.05 Total: 2.56 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.20 Total: -2.21 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.45 Total: -49.74 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.15 Total: -11.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.54 -9.15 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.955 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds