Wall clock time and date at job start Tue Mar 31 2020 12:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99629 * 2 1 4 4 H 1.48492 * 109.47391 * 274.98575 * 3 2 1 5 5 H 1.48501 * 109.47257 * 34.98777 * 3 2 1 6 6 H 1.48506 * 109.47117 * 154.98274 * 3 2 1 7 7 C 1.38808 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 186.71248 * 7 2 1 9 9 N 1.36931 * 119.99919 * 6.71699 * 7 2 1 10 10 C 1.47437 * 126.05677 * 353.96003 * 9 7 2 11 11 C 1.54501 * 107.15080 * 181.61851 * 10 9 7 12 12 C 1.56015 * 102.62625 * 22.82456 * 11 10 9 13 13 H 1.08992 * 112.90360 * 202.91130 * 12 11 10 14 14 C 1.52738 * 106.47129 * 78.39130 * 12 11 10 15 15 N 1.46522 * 110.47154 * 203.10050 * 14 12 11 16 16 C 1.34780 * 121.01591 * 235.56706 * 15 14 12 17 17 O 1.21285 * 119.99887 * 359.72240 * 16 15 14 18 18 C 1.50698 * 120.00012 * 179.72140 * 16 15 14 19 19 C 1.53003 * 109.46845 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.46844 * 179.97438 * 19 18 16 21 21 C 1.34513 * 125.78387 * 90.00397 * 20 19 18 22 22 C 1.41389 * 106.83482 * 179.73195 * 21 20 19 23 23 C 1.34504 * 106.84134 * 0.02562 * 22 21 20 24 24 O 1.34297 * 108.42514 * 359.97438 * 23 22 21 25 25 C 1.47148 * 117.97105 * 55.29259 * 15 14 12 26 26 C 1.53040 * 107.68881 * 302.83183 * 25 15 14 27 27 C 1.46470 * 126.05657 * 173.98228 * 9 7 2 28 28 H 1.09000 * 108.34786 * 269.12622 * 27 9 7 29 29 H 0.97001 * 120.00475 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.89721 * 300.99599 * 10 9 7 31 31 H 1.08992 * 109.90052 * 62.05534 * 10 9 7 32 32 H 1.08992 * 110.78145 * 141.11394 * 11 10 9 33 33 H 1.09004 * 110.77861 * 264.35740 * 11 10 9 34 34 H 1.09004 * 109.24380 * 82.77887 * 14 12 11 35 35 H 1.08995 * 109.18204 * 323.39022 * 14 12 11 36 36 H 1.08998 * 109.47361 * 60.00160 * 18 16 15 37 37 H 1.08999 * 109.47246 * 299.99810 * 18 16 15 38 38 H 1.09000 * 109.46818 * 60.00666 * 19 18 16 39 39 H 1.08999 * 109.47351 * 300.00121 * 19 18 16 40 40 H 1.07997 * 126.58325 * 359.77128 * 21 20 19 41 41 H 1.08001 * 126.57437 * 179.97438 * 22 21 20 42 42 H 1.08005 * 125.78614 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.81457 * 62.37920 * 25 15 14 44 44 H 1.08998 * 109.81155 * 183.28147 * 25 15 14 45 45 H 1.08999 * 109.14969 * 174.82208 * 26 25 15 46 46 H 1.09007 * 109.14769 * 294.03241 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 -0.0005 8 1 3.0847 -1.2052 0.1088 9 7 1.3327 -2.3838 -0.1398 10 6 -0.1324 -2.5455 -0.1725 11 6 -0.4211 -4.0577 -0.3029 12 6 0.8858 -4.7036 0.2528 13 1 1.0442 -5.7193 -0.1093 14 6 0.7964 -4.6207 1.7753 15 7 2.1338 -4.6775 2.3710 16 6 2.4426 -5.6067 3.2973 17 8 1.6060 -6.4094 3.6534 18 6 3.8273 -5.6483 3.8904 19 6 3.9120 -6.7873 4.9085 20 6 5.2969 -6.8292 5.5012 21 6 5.7023 -6.1687 6.6006 22 6 7.0631 -6.4980 6.7977 23 6 7.4079 -7.3396 5.8068 24 8 6.3342 -7.5368 5.0246 25 6 3.1315 -3.6932 1.9227 26 6 3.2753 -3.8347 0.4057 27 6 1.9351 -3.7113 -0.2821 28 1 2.0724 -3.9137 -1.3443 29 1 -0.4851 0.8400 0.0004 30 1 -0.5686 -2.1627 0.7502 31 1 -0.5456 -2.0110 -1.0278 32 1 -1.2809 -4.3410 0.3041 33 1 -0.5785 -4.3327 -1.3459 34 1 0.2002 -5.4545 2.1461 35 1 0.3158 -3.6833 2.0553 36 1 4.0385 -4.7012 4.3869 37 1 4.5572 -5.8138 3.0980 38 1 3.7007 -7.7345 4.4123 39 1 3.1821 -6.6214 5.7009 40 1 5.1032 -5.5131 7.2152 41 1 7.7031 -6.1414 7.5913 42 1 8.3827 -7.7823 5.6647 43 1 2.7942 -2.6866 2.1696 44 1 4.0887 -3.8916 2.4048 45 1 3.9405 -3.0547 0.0353 46 1 3.7054 -4.8098 0.1767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036644968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:23 Heat of formation + Delta-G solvation = -12.656849 kcal Electronic energy + Delta-G solvation = -27287.208862 eV Core-core repulsion = 23564.314389 eV Total energy + Delta-G solvation = -3722.894473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44116 -41.49889 -39.77699 -36.48270 -35.14997 -34.54030 -33.66248 -33.15713 -31.19285 -30.04237 -28.96724 -26.97911 -26.10363 -24.54506 -23.95468 -22.62055 -21.82630 -21.31566 -20.77229 -19.58833 -18.62948 -18.22106 -17.66944 -17.18564 -16.93673 -16.74500 -16.56846 -16.12376 -15.67452 -15.39805 -15.18613 -14.72780 -14.38985 -14.20529 -13.92478 -13.83041 -13.68934 -13.50793 -13.28530 -13.17449 -13.06895 -12.93502 -12.84006 -12.59281 -12.52893 -12.19641 -12.05565 -11.95774 -11.66402 -11.51042 -11.44006 -11.16908 -10.83831 -10.76338 -10.61736 -9.56872 -9.33940 -8.78257 -7.78797 -5.10778 0.82747 1.48911 1.50453 1.58172 1.63000 1.73521 1.99670 2.23935 2.53988 3.41078 3.46375 3.61376 3.82707 3.89520 3.93475 4.03803 4.08780 4.11549 4.19979 4.24668 4.28341 4.35519 4.47084 4.58362 4.59166 4.63149 4.76061 4.77822 4.85185 4.92319 4.96931 4.99596 5.01935 5.11147 5.15046 5.26155 5.28053 5.29440 5.41026 5.55440 5.61109 5.66121 5.70530 5.81399 6.25971 6.26512 6.52176 7.16071 7.16585 7.86075 8.53743 9.33437 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.003282 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.163404 B = 8528.961446 C = 9643.598319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.217 4.217 8 H 0.093 0.907 9 N -0.608 5.608 10 C 0.185 3.815 11 C -0.130 4.130 12 C -0.103 4.103 13 H 0.104 0.896 14 C 0.133 3.867 15 N -0.602 5.602 16 C 0.514 3.486 17 O -0.586 6.586 18 C -0.126 4.126 19 C -0.017 4.017 20 C -0.024 4.024 21 C -0.219 4.219 22 C -0.229 4.229 23 C -0.044 4.044 24 O -0.193 6.193 25 C 0.118 3.882 26 C -0.126 4.126 27 C 0.162 3.838 28 H 0.014 0.986 29 H 0.242 0.758 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.235 0.765 43 H 0.057 0.943 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 -14.274 9.161 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.222 1.222 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.346 4.346 8 H 0.110 0.890 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.123 4.123 13 H 0.122 0.878 14 C 0.010 3.990 15 N -0.333 5.333 16 C 0.305 3.695 17 O -0.467 6.467 18 C -0.165 4.165 19 C -0.054 4.054 20 C -0.074 4.074 21 C -0.238 4.238 22 C -0.247 4.247 23 C -0.111 4.111 24 O -0.089 6.089 25 C -0.005 4.005 26 C -0.164 4.164 27 C 0.055 3.945 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.019 -14.639 9.108 21.604 hybrid contribution -0.229 1.684 -0.080 1.702 sum 12.790 -12.954 9.029 20.320 Atomic orbital electron populations 1.70187 1.06375 1.24781 1.58972 1.25554 0.96329 1.00709 1.03588 0.85220 0.78225 0.80092 0.76843 1.22219 1.23125 1.18567 1.19374 0.91693 0.83085 1.40494 0.88977 1.44550 1.01760 1.01658 1.85328 1.20966 0.84447 0.91309 0.97314 1.23008 0.97253 0.95537 1.01103 1.22624 0.96222 0.98964 0.94454 0.87832 1.21197 0.84014 1.01182 0.92647 1.48128 1.13309 1.31848 1.39998 1.21051 0.90777 0.79277 0.78437 1.90653 1.52135 1.41456 1.62445 1.21662 0.93167 1.01571 1.00140 1.19729 0.87589 0.99435 0.98672 1.22469 0.90084 0.97718 0.97119 1.21922 0.96991 1.05173 0.99687 1.22180 0.96410 1.03258 1.02890 1.24771 0.91909 1.02268 0.92131 1.84019 1.18961 1.57027 1.48936 1.21784 0.92011 0.91690 0.94973 1.21559 0.97250 1.02594 0.95041 1.20478 0.92701 0.85015 0.96294 0.96841 0.94897 0.97512 0.97582 0.90503 0.90910 0.90221 0.93599 0.86957 0.86846 0.90110 0.88357 0.82624 0.81623 0.74838 0.92428 0.86975 0.90878 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.41 10.42 21.65 0.23 -56.19 16 2 C -0.07 -3.78 5.48 84.86 0.47 -3.32 16 3 Si 0.97 44.31 29.56 68.60 2.03 46.33 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.22 -11.13 9.03 84.03 0.76 -10.37 16 8 H 0.09 4.37 6.66 -2.91 -0.02 4.35 16 9 N -0.61 -28.60 3.12 -674.33 -2.11 -30.70 16 10 C 0.18 8.85 4.65 86.71 0.40 9.25 16 11 C -0.13 -4.67 6.28 32.15 0.20 -4.47 16 12 C -0.10 -3.37 3.84 -9.50 -0.04 -3.41 16 13 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 14 C 0.13 4.55 5.44 86.29 0.47 5.02 16 15 N -0.60 -18.28 2.94 -820.53 -2.41 -20.69 16 16 C 0.51 14.64 7.71 87.66 0.68 15.32 16 17 O -0.59 -20.40 15.41 -3.04 -0.05 -20.45 16 18 C -0.13 -2.53 4.04 29.85 0.12 -2.41 16 19 C -0.02 -0.34 5.04 29.85 0.15 -0.19 16 20 C -0.02 -0.49 6.58 24.83 0.16 -0.32 16 21 C -0.22 -4.07 10.81 22.19 0.24 -3.83 16 22 C -0.23 -3.61 10.91 22.19 0.24 -3.37 16 23 C -0.04 -0.65 12.09 66.96 0.81 0.16 16 24 O -0.19 -3.91 10.65 -2.41 -0.03 -3.94 16 25 C 0.12 3.35 6.27 86.27 0.54 3.89 16 26 C -0.13 -3.74 5.16 30.00 0.15 -3.59 16 27 C 0.16 5.96 2.85 44.73 0.13 6.09 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.01 0.36 7.16 -2.38 -0.02 0.35 16 31 H 0.01 0.33 7.42 -2.39 -0.02 0.31 16 32 H 0.08 2.51 7.97 -2.39 -0.02 2.50 16 33 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.08 2.73 7.00 -2.38 -0.02 2.71 16 35 H 0.05 1.87 6.79 -2.39 -0.02 1.85 16 36 H 0.11 1.97 7.90 -2.39 -0.02 1.95 16 37 H 0.11 1.94 7.78 -2.39 -0.02 1.92 16 38 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.10 2.02 8.10 -2.39 -0.02 2.01 16 40 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.24 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.06 2.05 7.48 -2.39 -0.02 2.03 16 44 H 0.11 2.32 5.99 -2.39 -0.01 2.30 16 45 H 0.07 2.25 7.02 -2.39 -0.02 2.24 16 46 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -68.92 360.01 4.12 -64.80 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.97 Total: 16.37 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.49 Total: 4.46 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.29 Total: -107.58 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.92 4.12 -64.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.147 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds